TCONS_00008925 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008925
Unique NameTCONS_00008925
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008925 ID=TCONS_00008925|Name=TCONS_00008925|organism=Clytia hemisphaerica|type=transcript|length=663bp
NGGGTGCAAGCACTGTCTTTTTATTCCAAATACTTTGAAAGTTACATACT
GTTAGACGAAGCTGTTTCGATTTTTTCTTTGGAATGCCATCATCGATGGa
atggttagagccatctgacgAGATTGATGAAACAGAAGTGTCGAATAATG
ATGTAGATAGTCCTTTCAGTGCACATTGGTAGCAAGTCCAGGAGAGGCTT
TTGTCAGTAGAATAGCAGTCAAATACTTGGTCCCCCATGCGGCAGCAGTT
CTTATGGTACCAGAGGTCACACATGTCGCAAGCAATGGAAACATCGGTTC
TTTTGACGCGTTTTTGACAGTCACCACATGGAAATTTAATCTTATAGGTT
CTTGGTCCTGGGTTCACTTCAACTGAGCCACTTATGATAAGAAGTATTTG
TTGTAGCAAGCCATAAGGGTGGATATTGTAGCGACGCGAGTTATCCCGAT
AATAAAATGCAATTGACATCAAACAGGTTTCATTGTTTGAGAAGACTTTA
CAACATAAAAGAGAGTCTCCTTGAGGTATTGTAGTCAGTTCAGTAACTTG
GAATTGCCAGAAGAAGGCAAATAAGGAAACAATTTTTAGGAGATTCATTG
TTGGTGAAGCagataaaacaataaaataagtAAGGAGGTACCTGCTCAGC
TGTACGTCGATTC
Run BLAST on NCBI

protein sequence of TCONS_00008925-protein

>TCONS_00008925-protein ID=TCONS_00008925-protein|Name=TCONS_00008925-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
IDVQLSRYLLTYFIVLSASPTMNLLKIVSLFAFFWQFQVTELTTIPQGDS
LLCCKVFSNNETCLMSIAFYYRDNSRRYNIHPYGLLQQILLIISGSVEVN
PGPRTYKIKFPCGDCQKRVKRTDVSIACDMCDLWYHKNCCRMGDQVFDCY
STDKSLSWTCYQCALKGLSTSLFDTSVSSISSDGSNHSIDDGIPKKKSKQ
LRLTVCNFQSIWNKKTVLAP
Run BLAST on NCBI

transcript from alignment at sc0000088:295147..295809

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008925 ID=TCONS_00008925|Name=TCONS_00008925|organism=Clytia hemisphaerica|type=transcript|length=663bp|location=Sequence derived from alignment at sc0000088:295147..295809 (Clytia hemisphaerica)
GAATCGACGTACAGCTGAGCAGGTACCTCCTTacttattttattgtttta
tctGCTTCACCAACAATGAATCTCCTAAAAATTGTTTCCTTATTTGCCTT
CTTCTGGCAATTCCAAGTTACTGAACTGACTACAATACCTCAAGGAGACT
CTCTTTTATGTTGTAAAGTCTTCTCAAACAATGAAACCTGTTTGATGTCA
ATTGCATTTTATTATCGGGATAACTCGCGTCGCTACAATATCCACCCTTA
TGGCTTGCTACAACAAATACTTCTTATCATAAGTGGCTCAGTTGAAGTGA
ACCCAGGACCAAGAACCTATAAGATTAAATTTCCATGTGGTGACTGTCAA
AAACGCGTCAAAAGAACCGATGTTTCCATTGCTTGCGACATGTGTGACCT
CTGGTACCATAAGAACTGCTGCCGCATGGGGGACCAAGTATTTGACTGCT
ATTCTACTGACAAAAGCCTCTCCTGGACTTGCTACCAATGTGCACTGAAA
GGACTATCTACATCATTATTCGACACTTCTGTTTCATCAATCTcgtcaga
tggctctaaccattCCATCGATGATGGCATTCCAAAGAAAAAATCGAAAC
AGCTTCGTCTAACAGTATGTAACTTTCAAAGTATTTGGAATAAAAAGACA
GTGCTTGCACCCN

Coding sequence (CDS) from alignment at sc0000088:295147..295809

>TCONS_00008925 ID=TCONS_00008925|Name=TCONS_00008925|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0000088:295147..295809 (Clytia hemisphaerica)
ATCGACGTACAGCTGAGCAGGTACCTCCTTacttattttattgttttatc
tGCTTCACCAACAATGAATCTCCTAAAAATTGTTTCCTTATTTGCCTTCT
TCTGGCAATTCCAAGTTACTGAACTGACTACAATACCTCAAGGAGACTCT
CTTTTATGTTGTAAAGTCTTCTCAAACAATGAAACCTGTTTGATGTCAAT
TGCATTTTATTATCGGGATAACTCGCGTCGCTACAATATCCACCCTTATG
GCTTGCTACAACAAATACTTCTTATCATAAGTGGCTCAGTTGAAGTGAAC
CCAGGACCAAGAACCTATAAGATTAAATTTCCATGTGGTGACTGTCAAAA
ACGCGTCAAAAGAACCGATGTTTCCATTGCTTGCGACATGTGTGACCTCT
GGTACCATAAGAACTGCTGCCGCATGGGGGACCAAGTATTTGACTGCTAT
TCTACTGACAAAAGCCTCTCCTGGACTTGCTACCAATGTGCACTGAAAGG
ACTATCTACATCATTATTCGACACTTCTGTTTCATCAATCTcgtcagatg
gctctaaccattCCATCGATGATGGCATTCCAAAGAAAAAATCGAAACAG
CTTCGTCTAACAGTATGTAACTTTCAAAGTATTTGGAATAAAAAGACAGT
GCTTGCACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005004XLOC_005004Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008925-proteinTCONS_00008925-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008925-exon-sc0000088-1491911889:295147..295809TCONS_00008925-exon-sc0000088-1491911889:295147..295809Clytia hemisphaericaexon
TCONS_00008925-exon-sc0000088-1510915933:295147..295809TCONS_00008925-exon-sc0000088-1510915933:295147..295809Clytia hemisphaericaexon
TCONS_00008925-exon-sc0000088-1575043694:295147..295809TCONS_00008925-exon-sc0000088-1575043694:295147..295809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:295147..295809 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.69533	0.949564	1.40554	1.16798	2.9626	2.9199	1.17681	1.41085	1.37738	1.48082	0.950054	0.605251	0.938683	1.47283	1.64797	2.37594	3.13179	1.70573	0.830697	1.68051	1.7542	0.710679	0.636476	1.29196	0	0	0.485193	0.253494	1.23671	0.391347
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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