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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008917 ID=TCONS_00008917|Name=TCONS_00008917|organism=Clytia hemisphaerica|type=transcript|length=890bp
TCTGCCACTTCTAAGCCAATTAAAATCAAGGAAGTCATAGACACCTTTTG
TTTACTATTTCGTTGTCATGGGTACTCAAAAATCTCCGCTGAGATCCTCC
GCCAATCAAAGTTCGACCAACGTGACGTAGTCATTCCTTTATTAGATTTT
GTATTCAATGTTTTAACCAAAAATTTGGATCATGATTTCAGTAGCTGGAA
CAGCTCTAAGAAATTTATGTTGGTTCTGTCAATGCTGAAAGAGGTTGGCT
ATCCAAGAACACATTTGCTATTCTGCAAAGAGTTGGTAAATATGTCAAGT
CAAGAGTTGCTTCTTGCCTTTGGTTATCTATTGGTCAAGCTAGACATCAT
TGGTAAATTGCGACATGACGCTGTACATTATGTCAACGCTGCTATCATTG
AATCTTGCAATCCCGGCGATACACAACCGTTAACCAAAtcgaaaatttca
ttaaatgaTTCTGTAcgtttgactaaaaaaatcgaatttctacAACGCGA
TTTATCCACAGATTCTGGTTATCTGGAAAAATTACTTCGGGAATTCAACC
AAATAGACGAAGAACATCTACAGAGCTCATTAATTTCACGTGGTGAACCA
CCAACTAAAGATGGCGGCGCTGAGATGAAACATTTTGTTAAACCGAACAT
TTtagatttgatattttttcagaatttcaaaTTACAAGAACACTGTATTG
AGCTTTTAAAGAAACAAATTGAAATGCTTCGAATGCATAATAAATGGGTC
CAGCAAGAATCGTTATTTTGGAAATGGTTATCCAGTATTCCAAAAAAACA
CTGTACTAAAGCATATACATTGGGAACTACTTTAGAACTTTTAAGACAAC
CAGATCAAGAAGTTCCATTCAAAAGGTTTCTCAGTGATGA Run BLAST on NCBI protein sequence of TCONS_00008917-protein >TCONS_00008917-protein ID=TCONS_00008917-protein|Name=TCONS_00008917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
SATSKPIKIKEVIDTFCLLFRCHGYSKISAEILRQSKFDQRDVVIPLLDF
VFNVLTKNLDHDFSSWNSSKKFMLVLSMLKEVGYPRTHLLFCKELVNMSS
QELLLAFGYLLVKLDIIGKLRHDAVHYVNAAIIESCNPGDTQPLTKSKIS
LNDSVRLTKKIEFLQRDLSTDSGYLEKLLREFNQIDEEHLQSSLISRGEP
PTKDGGAEMKHFVKPNILDLIFFQNFKLQEHCIELLKKQIEMLRMHNKWV
QQESLFWKWLSSIPKKHCTKAYTLGTTLELLRQPDQEVPFKRFLSD Run BLAST on NCBI transcript from alignment at sc0000088:208744..209633 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008917 ID=TCONS_00008917|Name=TCONS_00008917|organism=Clytia hemisphaerica|type=transcript|length=890bp|location=Sequence derived from alignment at sc0000088:208744..209633 (Clytia hemisphaerica)
TCATCACTGAGAAACCTTTTGAATGGAACTTCTTGATCTGGTTGTCTTAA
AAGTTCTAAAGTAGTTCCCAATGTATATGCTTTAGTACAGTGTTTTTTTG
GAATACTGGATAACCATTTCCAAAATAACGATTCTTGCTGGACCCATTTA
TTATGCATTCGAAGCATTTCAATTTGTTTCTTTAAAAGCTCAATACAGTG
TTCTTGTAAtttgaaattctgaaaaaatatcaaatctaAAATGTTCGGTT
TAACAAAATGTTTCATCTCAGCGCCGCCATCTTTAGTTGGTGGTTCACCA
CGTGAAATTAATGAGCTCTGTAGATGTTCTTCGTCTATTTGGTTGAATTC
CCGAAGTAATTTTTCCAGATAACCAGAATCTGTGGATAAATCGCGTTgta
gaaattcgatttttttagtcaaacgTACAGAAtcatttaatgaaattttc
gaTTTGGTTAACGGTTGTGTATCGCCGGGATTGCAAGATTCAATGATAGC
AGCGTTGACATAATGTACAGCGTCATGTCGCAATTTACCAATGATGTCTA
GCTTGACCAATAGATAACCAAAGGCAAGAAGCAACTCTTGACTTGACATA
TTTACCAACTCTTTGCAGAATAGCAAATGTGTTCTTGGATAGCCAACCTC
TTTCAGCATTGACAGAACCAACATAAATTTCTTAGAGCTGTTCCAGCTAC
TGAAATCATGATCCAAATTTTTGGTTAAAACATTGAATACAAAATCTAAT
AAAGGAATGACTACGTCACGTTGGTCGAACTTTGATTGGCGGAGGATCTC
AGCGGAGATTTTTGAGTACCCATGACAACGAAATAGTAAACAAAAGGTGT
CTATGACTTCCTTGATTTTAATTGGCTTAGAAGTGGCAGA Coding sequence (CDS) from alignment at sc0000088:208744..209633 >TCONS_00008917 ID=TCONS_00008917|Name=TCONS_00008917|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at sc0000088:208744..209633 (Clytia hemisphaerica)
ATCACTGAGAAACCTTTTGAATGGAACTTCTTGATCTGGTTGTCTTAAAA
GTTCTAAAGTAGTTCCCAATGTATATGCTTTAGTACAGTGTTTTTTTGGA
ATACTGGATAACCATTTCCAAAATAACGATTCTTGCTGGACCCATTTATT
ATGCATTCGAAGCATTTCAATTTGTTTCTTTAAAAGCTCAATACAGTGTT
CTTGTAAtttgaaattctgaaaaaatatcaaatctaAAATGTTCGGTTTA
ACAAAATGTTTCATCTCAGCGCCGCCATCTTTAGTTGGTGGTTCACCACG
TGAAATTAATGAGCTCTGTAGATGTTCTTCGTCTATTTGGTTGAATTCCC
GAAGTAATTTTTCCAGATAACCAGAATCTGTGGATAAATCGCGTTgtaga
aattcgatttttttagtcaaacgTACAGAAtcatttaatgaaattttcga
TTTGGTTAACGGTTGTGTATCGCCGGGATTGCAAGATTCAATGATAGCAG
CGTTGACATAATGTACAGCGTCATGTCGCAATTTACCAATGATGTCTAGC
TTGACCAATAGATAACCAAAGGCAAGAAGCAACTCTTGACTTGACATATT
TACCAACTCTTTGCAGAATAGCAAATGTGTTCTTGGATAGCCAACCTCTT
TCAGCATTGACAGAACCAACATAAATTTCTTAGAGCTGTTCCAGCTACTG
AAATCATGATCCAAATTTTTGGTTAAAACATTGAATACAAAATCTAATAA
AGGAATGACTACGTCACGTTGGTCGAACTTTGATTGGCGGAGGATCTCAG
CGGAGATTTTTGAGTACCCATGACAACGAAATAGTAAACAAAAGGTGTCT
ATGACTTCCTTGATTTTAATTGGCTTAGAAGTGGCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008917-exon-sc0000088-1491911889:208744..209633 | TCONS_00008917-exon-sc0000088-1491911889:208744..209633 | Clytia hemisphaerica | exon |
| TCONS_00008917-exon-sc0000088-1510915933:208744..209633 | TCONS_00008917-exon-sc0000088-1510915933:208744..209633 | Clytia hemisphaerica | exon |
| TCONS_00008917-exon-sc0000088-1575043694:208744..209633 | TCONS_00008917-exon-sc0000088-1575043694:208744..209633 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000088 | supercontig | sc0000088:208744..209633 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027996 | DUF4509 |
Blast
The following BLAST results are available for this feature:
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