TCONS_00008915 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008915
Unique NameTCONS_00008915
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008915 ID=TCONS_00008915|Name=TCONS_00008915|organism=Clytia hemisphaerica|type=transcript|length=696bp
CATAGAACAAATCTGAAAGCAGTTTTCACTCGCAAAGAATACAACTGAAA
ATCACTTGAAAGCAGTCCAACAACACAAGATGGTTGAACTTAAGAAATTA
GTCAAAAAATGCTGTCTGGAAACCACCAAAAAGACGACAACATCAACGAC
GACCAAGATAGTCGCAATCACCAACGCTAAAACACAAACGAACAGTATCC
AACAATCTTCACTGACGAAGTCTTCATCTCAGAGAAGTTCATTGAGAAGC
AAACGATCACCCAATGAAAAACAGAATCATGACATTTGGATGCAAGCTTT
TCGTTACAGTTGTCGTTAAAACTCGTTCCagtctttttcacaaaaatctt
cAGACAATGGTGTCAATGATATACACAAACAACCCAACCAAGGAGAATCA
TCGACGTTCGCACAGCATTGTTGGAAATGCATTCTTTCAACGACTAACGC
AGAAGCTATCACAAAACTTTTGAATAAACAGCCTTGTTCTTACAAGGATA
AACTCTGCTGCATCACATGACATCAAGTTTTTATATGATAAATAAATATT
TGTTCAATATAATTTTATAGTGTTTGGAgtaattaaaagatttttttaat
tattgtaCCCGAGTTGTAAATAGAATTATTTGGGTTCTAAATAACTTTTA
TTCCTAATTtatattttactttaaaagagaaaattaaaCATACAAA
Run BLAST on NCBI

transcript from alignment at sc0000088:197697..198392

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008915 ID=TCONS_00008915|Name=TCONS_00008915|organism=Clytia hemisphaerica|type=transcript|length=696bp|location=Sequence derived from alignment at sc0000088:197697..198392 (Clytia hemisphaerica)
TTTGTATGtttaattttctcttttaaagtaaaatataAATTAGGAATAAA
AGTTATTTAGAACCCAAATAATTCTATTTACAACTCGGGtacaataatta
aaaaaatcttttaattacTCCAAACACTATAAAATTATATTGAACAAATA
TTTATTTATCATATAAAAACTTGATGTCATGTGATGCAGCAGAGTTTATC
CTTGTAAGAACAAGGCTGTTTATTCAAAAGTTTTGTGATAGCTTCTGCGT
TAGTCGTTGAAAGAATGCATTTCCAACAATGCTGTGCGAACGTCGATGAT
TCTCCTTGGTTGGGTTGTTTGTGTATATCATTGACACCATTGTCTgaaga
tttttgtgaaaaagactGGAACGAGTTTTAACGACAACTGTAACGAAAAG
CTTGCATCCAAATGTCATGATTCTGTTTTTCATTGGGTGATCGTTTGCTT
CTCAATGAACTTCTCTGAGATGAAGACTTCGTCAGTGAAGATTGTTGGAT
ACTGTTCGTTTGTGTTTTAGCGTTGGTGATTGCGACTATCTTGGTCGTCG
TTGATGTTGTCGTCTTTTTGGTGGTTTCCAGACAGCATTTTTTGACTAAT
TTCTTAAGTTCAACCATCTTGTGTTGTTGGACTGCTTTCAAGTGATTTTC
AGTTGTATTCTTTGCGAGTGAAAACTGCTTTCAGATTTGTTCTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004994XLOC_004994Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008915-exon-sc0000088-1491911889:197697..198392TCONS_00008915-exon-sc0000088-1491911889:197697..198392Clytia hemisphaericaexon
TCONS_00008915-exon-sc0000088-1510915933:197697..198392TCONS_00008915-exon-sc0000088-1510915933:197697..198392Clytia hemisphaericaexon
TCONS_00008915-exon-sc0000088-1575043694:197697..198392TCONS_00008915-exon-sc0000088-1575043694:197697..198392Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:197697..198392 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.582797	0.0710398	0.082484	0	0	0.0776319	0.187319	0.087683	0.0613889	0.0760401	0	0	1.69575	1.20758	20.2695	12.6519	0.218752	0.50448	1.00673	1.29658	0	0.206135	1.00233	1.21502	0.391077	0.279221	0.299674	0	0.646859	0.659047
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008915 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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