TCONS_00008913 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008913
Unique NameTCONS_00008913
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008913 ID=TCONS_00008913|Name=TCONS_00008913|organism=Clytia hemisphaerica|type=transcript|length=304bp
AACTTCCAATTGACATTGAGTATTGAGCTGATGGACATCTGTTGCAAACA
ATTTCTGTCGATGATTTAAGTCTTTTTATTTGAGGGTTGAAATGATTTCC
GCATACGgttgaaaagttttttatttgccCACgatgttttccaaacattt
tccaaaCTTTGAGTTCCTCGGACATTGATTTCGGTAGCACGATGTCAACT
TTTGTAACATAAATGGTGCTTCGCTTTGAATTCATTATTTGGCTACCTAT
AGCAATGGAATTTAATGTATACACACTGTTCGTCAAAtataaatctgaaa
attc
Run BLAST on NCBI

protein sequence of TCONS_00008913-protein

>TCONS_00008913-protein ID=TCONS_00008913-protein|Name=TCONS_00008913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
EFSDLYLTNSVYTLNSIAIGSQIMNSKRSTIYVTKVDIVLPKSMSEELKV
WKMFGKHRGQIKNFSTVCGNHFNPQIKRLKSSTEIVCNRCPSAQYSMSIG
S
Run BLAST on NCBI

transcript from alignment at sc0000088:108084..108387

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008913 ID=TCONS_00008913|Name=TCONS_00008913|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at sc0000088:108084..108387 (Clytia hemisphaerica)
gaattttcagatttataTTTGACGAACAGTGTGTATACATTAAATTCCAT
TGCTATAGGTAGCCAAATAATGAATTCAAAGCGAAGCACCATTTATGTTA
CAAAAGTTGACATCGTGCTACCGAAATCAATGTCCGAGGAACTCAAAGtt
tggaaaatgtttggaaaacatcGTGggcaaataaaaaacttttcaacCGT
ATGCGGAAATCATTTCAACCCTCAAATAAAAAGACTTAAATCATCGACAG
AAATTGTTTGCAACAGATGTCCATCAGCTCAATACTCAATGTCAATTGGA
AGTT

Coding sequence (CDS) from alignment at sc0000088:108084..108387

>TCONS_00008913 ID=TCONS_00008913|Name=TCONS_00008913|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0000088:108084..108387 (Clytia hemisphaerica)
gaattttcagatttataTTTGACGAACAGTGTGTATACATTAAATTCCAT
TGCTATAGGTAGCCAAATAATGAATTCAAAGCGAAGCACCATTTATGTTA
CAAAAGTTGACATCGTGCTACCGAAATCAATGTCCGAGGAACTCAAAGtt
tggaaaatgtttggaaaacatcGTGggcaaataaaaaacttttcaacCGT
ATGCGGAAATCATTTCAACCCTCAAATAAAAAGACTTAAATCATCGACAG
AAATTGTTTGCAACAGATGTCCATCAGCTCAATACTCAATGTCAATTGGA
AGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004992XLOC_004992Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008913-exon-sc0000088-1491911889:108084..108387TCONS_00008913-exon-sc0000088-1491911889:108084..108387Clytia hemisphaericaexon
TCONS_00008913-exon-sc0000088-1510915933:108084..108387TCONS_00008913-exon-sc0000088-1510915933:108084..108387Clytia hemisphaericaexon
TCONS_00008913-exon-sc0000088-1575043694:108084..108387TCONS_00008913-exon-sc0000088-1575043694:108084..108387Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008913-proteinTCONS_00008913-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:108084..108387 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.684493	0	0	0.503174	0.931982	0	3.05019	0.431478	0	0.485007	2.38616	3.1919	0.978614	2.92395	1.52783	0.917502	0	2.40742	1.63256	0	0	0	0	0	0.553779	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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