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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008902 ID=TCONS_00008902|Name=TCONS_00008902|organism=Clytia hemisphaerica|type=transcript|length=1590bp
AGGTTCTACCGTCTAAATATATCTGCGGTACGTATTTTGAATTAAACCCA
TCGATTATATGAATGATGTAAGCATTCATTTGAACGATTCATTTTGAATG
GTAAAGTGGAATATTTAAAACCAAGTTTTCAAGTATTTCGTCACAAATCA
CTTTTTTCTTTCGACGCAAGATGTTTGCCATGTTGTTTTTCACTGTCATC
ATTTTGATGTGTACTTTTGGTGTATGTTTTTCAATCGACTTTTCGTCAGT
GGCACCCGgtgattctttatttttcaagtcGAGAATCGAAGGTGAAATTA
TCAACGCTAATTCTTCTTCTTGGGAGAAAATTATTCCGCTATCCAGCGAA
CCTCAATGTAGGTCAAAATGCCATCATTCAACTCAATGTCGGTCAGCAGC
ATTTTATCCCACAGACAACATTTGCAAGTTCAGAGACGTAAATCGCCTTT
CACCAAACGGCGTATTCGTGCAGAAAGCTGGTATCAAAGTTTATGACAAA
CGAACAGCGCCTATTACACCGGTTATTATAAAAACGGTCGAAAATGCTAC
AGATTGCAAAGATGTCATGAATCAAGGCCACAAAAGAAGTGGTGTTTACA
TGGTTTCAACTGATGTCCAAAAATACGTCCCAATCCTCTGTGACATGGAC
ACAGCAGGTGGTGGCTGGACAGTGATTCAGCAACGTGTGGATGGTTCCAT
CCCTTTCAATCGAACATGGAATTCTTACAAATTTGGCTTCGGTGATTTCT
CTACTAACTTCTGGTTCGGTAATGATCGCATACACAATCTCACAACCCAT
TATGGCAACGATAATGACATCATCTTTGATCTCACAAAGCATGACGGAAC
CAAAACGAACGCAGGGTACAGGAATTTCTACATCGATGGTGAATCTAACA
AATATCGTCTCCATGTTAATAGCCGTTATGATCCTGATCTTCCAGATAGT
TCATATGCGGATGTAACTTTCACTCAAGGTTTTGGCTTACACGACGGAAA
AATCTTCTACACTATTGACGCTGATTCAAGTTTAAGTTGCTCAGAAGAAA
AGGGCGGCTCAGGTTGGTGGTTTGCCAACTGTTACAAGATCCATTTGAAT
GGAATATATGGACTTCAAGGCAGCGATGCAGGGATCGTTTGGGATAAAGT
CACTTTTATAGTTCCTTCTAGCGGCGGCAATAAAGTTCAACATCCATTCA
TCAAAACCCGAATGCTGGTCAGACGAAATAATTGACAGACGTATACCAGT
ACTAGTATCTTTGATCATAGATATTCTATTATCTGATTTATAGTTAGTGT
ATAAAAGATTcgaatattttaagaatttcaaatgtgtttgaagtttttga
atttattcGAATTTTTTACTATCACTacaaaaatggcgaaaactagGGAA
TAACAAGTTTAAACTCCTTAGTGAAAAAGATATTGAGAAATTGAGTGGCT
TTTTTTTCAGgcacttttggaaaaatataattttgttctGCTTTTTTCTT
CGGACATCAACTGTAAAACTGATTTATGTACCGCACTTTACCCAAAACAA
TCGAAACGCTCCCTTAACAATGAACGGCCTTAAAAACGGC Run BLAST on NCBI transcript from alignment at sc0000088:488964..492110- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008902 ID=TCONS_00008902|Name=TCONS_00008902|organism=Clytia hemisphaerica|type=transcript|length=3147bp|location=Sequence derived from alignment at sc0000088:488964..492110- (Clytia hemisphaerica)
AGGTTCTACCGTCTAAATATATCTGCGGTACGTATTTTGAATTAAACCCA
TCGATTATATGAATGATGTAAGCATTCATTTGAACGATTCATTTTGAATG
GTAAAGTGGAATATTTAAAACCAAGTTTTCAAGTATTTCGTCACAAATCA
CTTTTTTCTTTCGACGCAAGATGTTTGCCATGTTGTTTTTCACTGTCATC
ATTTTGATGTGTACTTTTGGTGTATGTTTTTCAATCGACTTTTCGTCAGT
GGCACCCGGTGATTCTTTATTTTTCAAGTCGAGAATCGAAGGTGAAATTA
TCAACGCTAATTCTTCTTCTTGGGAGAAAATTATTCCGCTATCCAGCGAA
CCTCAATGTAGGTCAAAATGCCATCATTCAACTCAATGTCGGTCAGCAGC
ATTTTATCCCACAGACAACATTTGCAAGTTCAGAGACGTAAATCGCCTTT
CACCAAACGGCGTATTCGTGCAGAAAGCTGGTATCAAAGTTTATGACAAA
CGAACAGCGCCTATTACACCGGTTATTATAAAAACGGTCGAAAATGCTAC
AGATTGCAAAGATGTCATGAATCAAGGCCACAAAAGAAGTGGTGTTTACA
TGGTTTCAACTGATGTCCAAAAATACGTCCCAATCCTCTGTGACATGGAC
ACAGCAGGTATGTTAAGCAGTTATTGGAAAAAGTCGAATCCAATATGCAC
TCTTCTCGTAGCCCAATATTTTTCATATTGGATGAGACTACGTCCAAATA
AATGGTTTATTATCCGTTCATCGCTAAAATATTTCCCGTTTTCAAGCATA
ATTCCAATTTAATTCATCGTGAATTATATGATTTGTTCTCTGTTTATTCA
AAAGTCTTATTTTTATTTGTGACGTAACGTCAAAAAGAAGATGCTCAATT
GTCATTGAACTTGTTTGTGACGTCAATTTTTGAAATACGCTCTCTAATTC
GATCTTCAAGGGAAATTGGATTATCATCGAATAAGGGAGCTTATCGAATA
AGGGAGCGTCCTTTATGAGAGTACCGAGTTTATGTATGTGTATTTTTCAG
CGACGGAGACGGTAAGGTTCTAATTGGAGTAGATCCTGACCATCTAAGGA
CGACGGTAAATCAGCACTTTTACCGTCCTCGATTTTGCGGGGCGGAATTG
CGGGTTTTTCCAAATCGCTTCAGTCACTCTACCGTCCTCAAAAGTGCAAA
TACATAAACTCGAGTTTCTTGTTGACAGGGACTTTAAATTTCATCGAATA
AGGGAGCCTATCGAATAGTAGAATGTCGAATTAGAGAGCGTGAACTGTAT
GTAGCCCCCATGGAAGCTATATATTCGAAAATATTGGACAGCAAAGAAGC
CAATCAAATGTCGCTATTTACGCGCTTCGGATAATAATCTTTTTTATTTG
ACCCCTTTTCTGTGAGGTTGGGCCTACCTCGCGTTTCAAAATAAAAGTTA
AAGTGGAAACCCCATTACAAGTACGGGAAGGGTAGGGAAAATAGGGAGGC
TAAGAACTGACATATGCTGACATCGGTTTTTAAAGGGTTTAAGAAATCTT
ATTGCAAACGTCAAAAATTAGCTTAAATCCCGTTTTGCCACTTTCCCGTA
AGGACGATTGCCGGGCCGGACGGCGTTTTCAGCCGGTCAAATTTTCCGTG
AGGCATCTCTACCAACCGGAAAACAAGCTCGCAAAGTTTCAAAGACGTAG
CATCAAAACTCCACACACAGCGGCCGATACAAGTACTTGTTAATCACACT
CTCCAATGCCGCGCAAGTGTTTACAAAATTGATTTCAATGTTTTTTTTCT
TATTTTTTTTATTCGAACGTTTTAATTGCATTCGAAATTTATTTTGTGAG
AAAGAAAGACTACAGTATGAACAACAATAAAAGAAAAACATGGAGAGAAG
AGAAAAATATAAAATTTTCAGTGTAATTTCTGTAATTTACTTTCATAACT
GGGAAAAAGTAGTGAAACCCATTGTGCGATTAGCTCGATATCACATAATA
ACTCGTACAATTCGAAAATTGCACTCGTGATTTTTTTGTTTCGAAAAAAA
AAATCACTCGTGCAATTATTCTCGAATTGCACTCGTTATCATTACATATA
CTAATCACATTATGTGATTACATATACAAACTAAAACTTTCATTAATGCA
TTGCTACTAATCTTGCAACATTCTTTCGCATTGATGACAAAAGATTCTAT
TTCTTTTTCACCAGGTGGTGGCTGGACAGTGATTCAGCAACGTGTGGATG
GTTCCATCCCTTTCAATCGAACATGGAATTCTTACAAATTTGGCTTCGGT
GATTTCTCTACTAACTTCTGGTTCGGTAATGATCGCATACACAATCTCAC
AACCCATTATGGCAACGATAATGACATCATCTTTGATCTCACAAAGCATG
ACGGAACCAAAACGAACGCAGGGTACAGGAATTTCTACATCGATGGTGAA
TCTAACAAATATCGTCTCCATGTTAATAGCCGTTATGATCCTGATCTTCC
AGATAGTTCATATGCGGATGTAACTTTCACTCAAGGTTTTGGCTTACACG
ACGGAAAAATCTTCTACACTATTGACGCTGATTCAAGTTTAAGTTGCTCA
GAAGAAAAGGGCGGCTCAGGTTGGTGGTTTGCCAACTGTTACAAGATCCA
TTTGAATGGAATATATGGACTTCAAGGCAGCGATGCAGGGATCGTTTGGG
ATAAAGTCACTTTTATAGTTCCTTCTAGCGGCGGCAATAAAGTTCAACAT
CCATTCATCAAAACCCGAATGCTGGTCAGACGAAATAATTGACAGACGTA
TACCAGTACTAGTATCTTTGATCATAGATATTCTATTATCTGATTTATAG
TTAGTGTATAAAAGATTCGAATATTTTAAGAATTTCAAATGTGTTTGAAG
TTTTTGAATTTATTCGAATTTTTTACTATCACTACAAAAATGGCGAAAAC
TAGGGAATAACAAGTTTAAACTCCTTAGTGAAAAAGATATTGAGAAATTG
AGTGGCTTTTTTTTCAGGCACTTTTGGAAAAATATAATTTTGTTCTGCTT
TTTTCTTCGGACATCAACTGTAAAACTGATTTATGTACCGCACTTTACCC
AAAACAATCGAAACGCTCCCTTAACAATGAACGGCCTTAAAAACGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008902-exon-sc0000088-1575043694:491454..492110 | TCONS_00008902-exon-sc0000088-1575043694:491454..492110 | Clytia hemisphaerica | exon |
| TCONS_00008902-exon-sc0000088-1575043694:488964..489896 | TCONS_00008902-exon-sc0000088-1575043694:488964..489896 | Clytia hemisphaerica | exon |
| TCONS_00008902-exon-sc0000088-1510915933:491454..492110 | TCONS_00008902-exon-sc0000088-1510915933:491454..492110 | Clytia hemisphaerica | exon |
| TCONS_00008902-exon-sc0000088-1510915933:488964..489896 | TCONS_00008902-exon-sc0000088-1510915933:488964..489896 | Clytia hemisphaerica | exon |
| TCONS_00008902-exon-sc0000088-1491911889:491454..492110 | TCONS_00008902-exon-sc0000088-1491911889:491454..492110 | Clytia hemisphaerica | exon |
| TCONS_00008902-exon-sc0000088-1491911889:488964..489896 | TCONS_00008902-exon-sc0000088-1491911889:488964..489896 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000088 | supercontig | sc0000088:488964..492110 - |
Blast
BLAST of TCONS_00008902 vs. Swiss-Prot (Human)
Match: FCN3 (Ficolin-3 OS=Homo sapiens GN=FCN3 PE=1 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 6.070e-40 Identity = 83/245 (33.88%), Postives = 134/245 (54.69%), Query Frame = 3
Query: 510 PITPV-IIKTVENATDCKDVMNQGHKRSGVYMVSTDVQKYVPILCDMDTAGGGWTVIQQRVDGSIPFNRTWNSYKFGFGDFSTNFWFGNDRIHNLTTHYGNDNDIIFDLTKHDGTKTNAGYRNFYIDGESNKYRLHVNSRYDPDLPDSSYADVTFTQGFGLHDGKIFYTIDAD---SSLSCSEEKGGSGWWFANCYKIHLNGIYGLQGSDA---GIVWDKVTFIVPSSGGNKVQHPFIKTRMLVR 1223
P PV +++ E +C+++++QG SG Y + + +P+ CDMDT GGGW V Q+R DGS+ F R+W+SY+ GFG+ + FW GN+ +H LT + ++ +L +G +T A Y F + GE + Y+L + +++ T LH G+ F T DAD S+ +C+ G+ WW+A+CY+ +LNG Y + + A GI W + G V HP+ + RM++R
Sbjct: 77 PGDPVNLLRCQEGPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQ--GNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALG----------KFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHGA-WWYASCYRSNLNGRYAVSEAAAHKYGIDW---------ASGRGVGHPYRRVRMMLR 299
The following BLAST results are available for this feature:
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