|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008895 ID=TCONS_00008895|Name=TCONS_00008895|organism=Clytia hemisphaerica|type=transcript|length=2789bpRun BLAST on NCBI protein sequence of TCONS_00008895-protein >TCONS_00008895-protein ID=TCONS_00008895-protein|Name=TCONS_00008895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=625bp KENWYYKYHFKKHDVTNVQSFFDRLSFKNTPNSGESDGEIYGAFEYRYDQRun BLAST on NCBI transcript from alignment at sc0000088:212227..246275- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008895 ID=TCONS_00008895|Name=TCONS_00008895|organism=Clytia hemisphaerica|type=transcript|length=34049bp|location=Sequence derived from alignment at sc0000088:212227..246275- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000088:212227..246275- >TCONS_00008895 ID=TCONS_00008895|Name=TCONS_00008895|organism=Clytia hemisphaerica|type=CDS|length=35682bp|location=Sequence derived from alignment at sc0000088:212227..246275- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008895 vs. Swiss-Prot (Human)
Match: PPCEL (Prolyl endopeptidase-like OS=Homo sapiens GN=PREPL PE=1 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 6.790e-55 Identity = 164/576 (28.47%), Postives = 271/576 (47.05%), Query Frame = 3
Query: 195 NVREVVLDLVDGESIID-MKVTPNEKFIAVSISNEDENILKCVVVKPSKRKSLILQKPPHISSYEWLNN----DTLL-----------VVKNDLASNRDIELLQLSISSGKMTSLFKENDKRF-SLNLSKSESGELVFLHSNSKDVSEIMIVRENELECLWSRSLQKYAHVDHINDTYYFYTIDNKDQEFCVQKKGINESS---WQTFIR-RSNTSSFLTNMVLDKWRGIITIEQENL--IPKIKLNDFDANKQVEFEPMKTPGVLEILKQQNTDDGSILLSTTSPIRPLTHHNIE-KNGQLLKDLKTERAFEWDEDRFRYENIEIESEDGEKVPVSIFHKKDIL-LRDSPMLCHVYGAYGHQVEMSFNKSRGYLLENDWILMFPHVRGGGGLGQKWYSDGKLQKKRNTFMDLRASLRSLHDQNISSPSKTALYGKSAGALPIGWLLNQNAERYCKAVILQSPFVSILHAMLLEKQKLTTFEYLEWGNPRENTTDYDYMKSYCPYFNMSVSKNDPAILVRTSLHDNHVPSWIPLQWVAKRRQLIQNGGYSANE---NPLFCQVDKKGGHYTQNDFH 1838
N+ E+ LD + ID ++V P+EK++A I ED CV++K S + ++ P++SS+EW+ + D L V + N+ E L+ D RF ++N+ + E+ + S ++I + R +V+H +D Y T + EF + + + + W F + NT +M D ++ ++ NL + I L D D+ + ++ P +++ N+D + SPIRP ++ + G+L ++ E R +E +S+DG+ VP+++FHK D L+ P+L HVYGAYG ++M+F R L+++ WIL + HVRGGG LG +W++DG+L KK N DL A +++LH Q S PS T L SAG + G L N N E +AV L++PF+ +L+ M+ LT E EWGNP + +Y+K YCPY N+ ++ P+I + +D VP + + K ++ I E P + GG++ D H
Sbjct: 147 NLEELKLD----QPFIDCIRVAPDEKYVAAKIRTEDSEASTCVIIKLSDQ-PVMEASFPNVSSFEWVKDEEDEDVLFYTFQRNLRCHDVYRATFGDNKRNERFYTEKDPSYFVFLYLTKDSRFLTINIMNKTTSEVWLIDGLSPWDPPVLIQK---------RIHGVLYYVEHRDDELYILTNVGEPTEFKLMRTAADTPAIMNWDLFFTMKRNTKVIDLDMFKD--HCVLFLKHSNLLYVNVIGLAD-DSVRSLKLPPWACGFIMDT----NSDPKNCPFQLCSPIRPPKYYTYKFAEGKLFEETGHEDPITKTSRVLR---LEAKSKDGKLVPMTVFHKTDSEDLQKKPLLVHVYGAYGMDLKMNFRPERRVLVDDGWILAYCHVRGGGELGLQWHADGRLTKKLNGLADLEACIKTLHGQGFSQPSLTTLTAFSAGGVLAGALCNSNPE-LVRAVTLEAPFLDVLNTMMDTTLPLTLEELEEWGNPSSDEKHKNYIKRYCPYQNIK-PQHYPSIHITAYENDERVPLKGIVSYTEKLKEAIAEHAKDTGEGYQTPNIILDIQPGGNHVIEDSH 696 The following BLAST results are available for this feature:
BLAST of TCONS_00008895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.