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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008891 ID=TCONS_00008891|Name=TCONS_00008891|organism=Clytia hemisphaerica|type=transcript|length=1365bp
TATATTCTGATTTTAGTTCAtatcatataaaaaaaatcttataaaaaaac
aagaagaaCTGGAATATGAAAACATGACAAACTCTTAGAGGAGCATACTA
CCTAGTGCCAAGTATGGCTGATTGCTGAACACCAGAAAGAATGTCTGCCA
CTTCTAAGCCAATTAAAATCAAGGAAGTCATAGACACCTTTTGTTTACTA
TTTCGTTGTCATGGGTACTCAAAAATCTCCGCTGAGATCCTCCGCCAATC
AAAGTTCGACCAACGTGACGTAGTCATTCCTTTATTAGATTTTGTATTCA
ATGTTTTAACCAAAAATTTGGATCATGATTACAGTAGCTGGAACAGCTCT
AAGAAATTTATGTTGGTTCTGTCAATGCTGAAAGAGGTTGGCTATCCAAG
AACACATTTGCTATTCTGCAAAGAGTTGGTAAATATGTCAAGTCAAGAGT
TGCTTCTTGCCTTTGGTTATCTATTGGTCAAGCTAGACATCATTGGTAAA
TTGCGACATGACGCTGTACATTATGTCAACGCTGCTATCATTGAATCTTG
CAATCCCGGCGATACACAACCGTTAACCAAAtcgaaaatttcattaaatg
aTTCTGTAcgtttgactaaaaaaatcgaatttctacAACGCGATTTATCC
ACAGATTCTGGTTATCTGGAAAAATTACTTCGGGAATTCAACCAAATAGA
CAAAGAACATCTACAGAGCTCATTAATTTCACGTGGTGAACCACCAACTA
AAGATGGCGGCGCTGAGATGAAACATTTTGTTAAACCGAACATTTtagat
ttgatattttttcagaatttcaaaTTACAAGAACACTGTATTGAGCTTTT
AAAGAAACAAATTGAAATGCTTCGAATACATAATAAATGGGTCCAGCAAG
AATCGTTATTTTGGAAATGGTTATCCAGTATTCCAAAAAAACACTGTACT
AAAGCATATACATTGGGAACTACTTCAGAACTTTTAAGACAACCAGATCA
AGAAGTTCCATTCAAAAGGTTTCTCAGTGATGATTTACTAAAAACCATTT
TCCAACAGTGTCAATTTGATTTTGATGATGAAACCGAATTATGTAATGAA
GTTCTGGATGAGAGTTTTAAAAATTCTTTGGACGACTTAAAAAGTAGTAT
CGATAAGATCGaggatgaaaataagaaatggTTGCAAAATCTTGTGACTG
ATAGATTCCCAAATTATGTCCAGCTACCTGAACTAAAAAGGTAAAATGTT
TCCGTCACGTGTACAGTTTTGCTTTATACATGGCacgctttcttttataa
gacGCCGTGATTTTTGGCCGAGGCTCAGCTGTTTTACATTCTTTTCGTGA
CCTTCAGGCTTGAAA Run BLAST on NCBI protein sequence of TCONS_00008891-protein >TCONS_00008891-protein ID=TCONS_00008891-protein|Name=TCONS_00008891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
MSATSKPIKIKEVIDTFCLLFRCHGYSKISAEILRQSKFDQRDVVIPLLD
FVFNVLTKNLDHDYSSWNSSKKFMLVLSMLKEVGYPRTHLLFCKELVNMS
SQELLLAFGYLLVKLDIIGKLRHDAVHYVNAAIIESCNPGDTQPLTKSKI
SLNDSVRLTKKIEFLQRDLSTDSGYLEKLLREFNQIDKEHLQSSLISRGE
PPTKDGGAEMKHFVKPNILDLIFFQNFKLQEHCIELLKKQIEMLRIHNKW
VQQESLFWKWLSSIPKKHCTKAYTLGTTSELLRQPDQEVPFKRFLSDDLL
KTIFQQCQFDFDDETELCNEVLDESFKNSLDDLKSSIDKIEDENKKWLQN
LVTDRFPNYVQLPELKR Run BLAST on NCBI transcript from alignment at sc0000088:209787..211744- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008891 ID=TCONS_00008891|Name=TCONS_00008891|organism=Clytia hemisphaerica|type=transcript|length=1958bp|location=Sequence derived from alignment at sc0000088:209787..211744- (Clytia hemisphaerica)
TATATTCTGATTTTAGTTCATATCATATAAAAAAAATCTTATAAAAAAAC
AAGAAGAACTGGAATATGAAAACATGACAAACTCTTAGAGGAGCATACTA
CCTAGTGCCAAGTAAGTCAGTACGAGTTATTCTTATTAGGGCTATAAAGT
TTTTAAAATAGGCATTTTCTTGAAACCATTTCTGAATTGAAATCGTTACT
TTCCACTTTAATATTATTTGTTGACTCCTTTTTACAAATACGTCAACCTT
ATCTAATAGAATAACTTCATTGCGTTTCGAAAGTGTAATTTTTGAACGAG
TTCTGACATTATTCGTAATTTGTATTTTTCAGTTGCAGTGAAAATTAAGT
AAGCCTTGAGCTCTTACAAACTTTTGTATGTATGATGTGGCCAATAACAT
ATAGCCGAAAGCTAGAGTCGAATATCCAATGTAGGATTTGAAGTCTCTTA
CTTCCTTTCATAAGTTGCGAGGCCCGTTCATACAAATGCTAGATTGGAAG
TAACATTTACCGCCAGAATTCGAATAATATGCAATGTAAAAACAAAGGAA
GTGCTAGATTTAATCCGTCATCCGAATTTTAGGGCACCAGTTTTGGTTGT
ATAGGAAAGCATGGAGATTCCTCTCTAGTATTCATCTTATTGGATGTGAC
CGTTTGCATTTTAACATGTGAGATTTAGGGATTTTTTTTCATTTATTTTG
ATAGGTATGGCTGATTGCTGAACACCAGAAAGAATGTCTGCCACTTCTAA
GCCAATTAAAATCAAGGAAGTCATAGACACCTTTTGTTTACTATTTCGTT
GTCATGGGTACTCAAAAATCTCCGCTGAGATCCTCCGCCAATCAAAGTTC
GACCAACGTGACGTAGTCATTCCTTTATTAGATTTTGTATTCAATGTTTT
AACCAAAAATTTGGATCATGATTACAGTAGCTGGAACAGCTCTAAGAAAT
TTATGTTGGTTCTGTCAATGCTGAAAGAGGTTGGCTATCCAAGAACACAT
TTGCTATTCTGCAAAGAGTTGGTAAATATGTCAAGTCAAGAGTTGCTTCT
TGCCTTTGGTTATCTATTGGTCAAGCTAGACATCATTGGTAAATTGCGAC
ATGACGCTGTACATTATGTCAACGCTGCTATCATTGAATCTTGCAATCCC
GGCGATACACAACCGTTAACCAAATCGAAAATTTCATTAAATGATTCTGT
ACGTTTGACTAAAAAAATCGAATTTCTACAACGCGATTTATCCACAGATT
CTGGTTATCTGGAAAAATTACTTCGGGAATTCAACCAAATAGACAAAGAA
CATCTACAGAGCTCATTAATTTCACGTGGTGAACCACCAACTAAAGATGG
CGGCGCTGAGATGAAACATTTTGTTAAACCGAACATTTTAGATTTGATAT
TTTTTCAGAATTTCAAATTACAAGAACACTGTATTGAGCTTTTAAAGAAA
CAAATTGAAATGCTTCGAATACATAATAAATGGGTCCAGCAAGAATCGTT
ATTTTGGAAATGGTTATCCAGTATTCCAAAAAAACACTGTACTAAAGCAT
ATACATTGGGAACTACTTCAGAACTTTTAAGACAACCAGATCAAGAAGTT
CCATTCAAAAGGTTTCTCAGTGATGATTTACTAAAAACCATTTTCCAACA
GTGTCAATTTGATTTTGATGATGAAACCGAATTATGTAATGAAGTTCTGG
ATGAGAGTTTTAAAAATTCTTTGGACGACTTAAAAAGTAGTATCGATAAG
ATCGAGGATGAAAATAAGAAATGGTTGCAAAATCTTGTGACTGATAGATT
CCCAAATTATGTCCAGCTACCTGAACTAAAAAGGTAAAATGTTTCCGTCA
CGTGTACAGTTTTGCTTTATACATGGCACGCTTTCTTTTATAAGACGCCG
TGATTTTTGGCCGAGGCTCAGCTGTTTTACATTCTTTTCGTGACCTTCAG
GCTTGAAA Coding sequence (CDS) from alignment at sc0000088:209787..211744- >TCONS_00008891 ID=TCONS_00008891|Name=TCONS_00008891|organism=Clytia hemisphaerica|type=CDS|length=1104bp|location=Sequence derived from alignment at sc0000088:209787..211744- (Clytia hemisphaerica)
ATGTCTGCCACTTCTAAGCCAATTAAAATCAAGGAAGTCATAGACACCTT
TTGTTTACTATTTCGTTGTCATGGGTACTCAAAAATCTCCGCTGAGATCC
TCCGCCAATCAAAGTTCGACCAACGTGACGTAGTCATTCCTTTATTAGAT
TTTGTATTCAATGTTTTAACCAAAAATTTGGATCATGATTACAGTAGCTG
GAACAGCTCTAAGAAATTTATGTTGGTTCTGTCAATGCTGAAAGAGGTTG
GCTATCCAAGAACACATTTGCTATTCTGCAAAGAGTTGGTAAATATGTCA
AGTCAAGAGTTGCTTCTTGCCTTTGGTTATCTATTGGTCAAGCTAGACAT
CATTGGTAAATTGCGACATGACGCTGTACATTATGTCAACGCTGCTATCA
TTGAATCTTGCAATCCCGGCGATACACAACCGTTAACCAAATCGAAAATT
TCATTAAATGATTCTGTACGTTTGACTAAAAAAATCGAATTTCTACAACG
CGATTTATCCACAGATTCTGGTTATCTGGAAAAATTACTTCGGGAATTCA
ACCAAATAGACAAAGAACATCTACAGAGCTCATTAATTTCACGTGGTGAA
CCACCAACTAAAGATGGCGGCGCTGAGATGAAACATTTTGTTAAACCGAA
CATTTTAGATTTGATATTTTTTCAGAATTTCAAATTACAAGAACACTGTA
TTGAGCTTTTAAAGAAACAAATTGAAATGCTTCGAATACATAATAAATGG
GTCCAGCAAGAATCGTTATTTTGGAAATGGTTATCCAGTATTCCAAAAAA
ACACTGTACTAAAGCATATACATTGGGAACTACTTCAGAACTTTTAAGAC
AACCAGATCAAGAAGTTCCATTCAAAAGGTTTCTCAGTGATGATTTACTA
AAAACCATTTTCCAACAGTGTCAATTTGATTTTGATGATGAAACCGAATT
ATGTAATGAAGTTCTGGATGAGAGTTTTAAAAATTCTTTGGACGACTTAA
AAAGTAGTATCGATAAGATCGAGGATGAAAATAAGAAATGGTTGCAAAAT
CTTGTGACTGATAGATTCCCAAATTATGTCCAGCTACCTGAACTAAAAAG
GTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008891-exon-sc0000088-1575043694:211634..211744 | TCONS_00008891-exon-sc0000088-1575043694:211634..211744 | Clytia hemisphaerica | exon |
| TCONS_00008891-exon-sc0000088-1575043694:209787..211040 | TCONS_00008891-exon-sc0000088-1575043694:209787..211040 | Clytia hemisphaerica | exon |
| TCONS_00008891-exon-sc0000088-1510915933:211634..211744 | TCONS_00008891-exon-sc0000088-1510915933:211634..211744 | Clytia hemisphaerica | exon |
| TCONS_00008891-exon-sc0000088-1510915933:209787..211040 | TCONS_00008891-exon-sc0000088-1510915933:209787..211040 | Clytia hemisphaerica | exon |
| TCONS_00008891-exon-sc0000088-1491911889:211634..211744 | TCONS_00008891-exon-sc0000088-1491911889:211634..211744 | Clytia hemisphaerica | exon |
| TCONS_00008891-exon-sc0000088-1491911889:209787..211040 | TCONS_00008891-exon-sc0000088-1491911889:209787..211040 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000088 | supercontig | sc0000088:209787..211744 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027996 | DUF4509 |
Blast
The following BLAST results are available for this feature:
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