TCONS_00008888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008888
Unique NameTCONS_00008888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008888 ID=TCONS_00008888|Name=TCONS_00008888|organism=Clytia hemisphaerica|type=transcript|length=2546bp
AATTAATCTTAACCTTAAAGCTTTGATATCAGCAAAATAGGATAATTAGA
TCCAATTTTCAACTTCATTTCTCTCTTTCAGTGTCAAGGTAAATAAAATG
AATGAGAAAATGACGTAACTGCCTTTCACTGGTTGAAATACAGTGCATCA
GAAATGATTGTACTGTATAAACATCATATCTCATCAAGCACTGCACATCA
TTATACATCACATCaccaaaatgaaacaaaagaaagtgaaagaagAAGGG
GAACATGAAGTTTGTATCACTGTCACCATCGCTAAAGCATCCATCACAGA
CCAATTACCAGAcggcaaaaaatcagaaagtgcGCCACAAGTTCAAAACT
ACTTGCATTGTCAATACAAATTATTACCAGATgacaaagattttattaaa
aatgataTCGTTACTTTTGGTATGGCAGCCAAGATGTATGGAGATAATGA
CTCCAAAGTCTTGAGGACCTGGAATGATGGAGACAAAACTTGGGTTGCCT
GGACCAGCACTGTTAAAGTACGAATTACACAAGACGTTCTACTCAAGATG
TTCCAACATAAATTCGAATTAAAACTATGGGACACCAAAGATAAAGTATC
TGCCAAAGCAAGGTTTGATCGTCCAAAGGCCTTTCGACTTCCTCAGACTA
AAACTCAAGATGAGGTTGACTTAGAATCGTTAAAAAGTAAATTGAATAAC
GACAAAGGTATTATTCATCTTGGTGCTGGATCATCATCCTTGCTAGATCA
AAATAGagAAAAGAAGGCTAACAAAAAAGTGAGCTTTGTTGGGAACTACC
ACACGAACGAGCCAGAGCAACAATCAAGCCATCAATTCATCAGTACCACT
GACAGTAAAGTTGATGTCAAAGTTCGACTCAATCATGCCAACCAACCAGA
ATTTAAGAATCTAATTGATTTAGCATCGACCGGTGAAAATCCTTTAGCTG
TAGACACTGAAGAAATCGATCGTATCAACAAAGGAAATGAAGAATACAAG
GAGAAAATAAGTACGAAGACTGAAAGAGAAGACAATACACTGGCAGTACC
GTCAGCCAATAGGAAGAGTAGTAGAAGTAGTACACGTAATACCAATTCAA
GAAAATCATTACGTCATGGTGCATCGTCAGCATTACGTAAAATGGCGTCA
AGTAAACAAGACCATATCAATCAAAACGGGTTAGCTTGCATCGCAGTACC
TCTTTCCTCTCTCTTCACCAATTGTCTCTCCATCAGTAACACATTGGAAG
AACCAATCTCATCGTTGGAAGAGGTCATTGTCATCTTATCCTTGGATAAA
CCATTGCTATCAGATTACCAAAGATTCAAACTAAATCCTATGGTGCTGAC
TGTGAAATCAGCCAACTTAATGCCTAAAAATGGATTAGGTTATGATGAAT
TGCGACATCATTGTCATCCAGCTTATGTGAAGTACAAATTCTATGGCACT
GTGGAACATCGGAGTTTTGCAAAAGAACACTctagaaacatcaaattcaa
tgATAGCAATGTTATCCTATTAGGAACTTTGGATAAGAATCATTTGTTTG
AATATTTACGAGGACCAccattgaaaattgaagttcaTGATCGGGATATT
AAAGAAACACCGAAAAAGAAGTCTTCGGTGTTCGGTAGTAAACCCGAGga
cgaaaatattttcaacactgCTTACGCCGGAGGGACGCTGTTAGGATTAA
CAAATCAAGCTAAAACAGACAGCAACACTTATGGTGTAGCGGAGTTTGAT
TTGTCAGAACTCTTGAATGGGGAGCGCATTTTGCATCACACATCACCTAT
TAGAGCTTGCAAACAATCCCATGATATTCTCAATAATAAGGCATCTACAG
TACCAGTCGGTGACTATCTAGAAAGTGGAAGTGAACTGAAAATCAAAGTG
GAACTGGTTCGTAGTCTAACGGAACAGTATTATGCGATAGACACACGTGA
CAACCCCACAAGTTTAATGTCCAGTACCTCAGTGAACCAGCCAACACACG
GTGAACAGCAGCAATTGCTTTCTAGCACGACAGTGGACAGTAAAGGCAAT
TTGGAGACCATTACAAGTTCACAAGAAGTTAATTTAAAACAACAAACTAA
TGACCAACCTTCGTGCCCTTATGGCCGGATCGTTTACATCTTCGActata
aaaacaaagattttttgggcaaaattcTTGGTTTGACCACGGAAATCAAT
GCCAAATCGTTGGACTTTTGGACTTATCCAAAACACGTGATCGAAGCTGC
TCTTTCCACTTACAAGCTTTCCGAAAGCCAACAGAATGATCGGACATTGG
ATATTATTACTGGTTGCCAGATCATTGATGGTGAATATCACATTTTTGTT
CTGGAAGGTTTGGCGCATCAAGGTGTCAAACGATTATGGGACGAGCTGGA
ACATCCAAAATTAGACGGTGGAGGATTTTTCCGTGTGTTATACAATTCCG
ACATGACGTTTGCCAACCGTTTGTATATTTCACTGGATGTGGATTTGGCA
AGGATTCGATTGCATCAACCAATCAGTAACATTGTAAAGCAGCNGC
Run BLAST on NCBI

transcript from alignment at sc0000088:137851..146633-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008888 ID=TCONS_00008888|Name=TCONS_00008888|organism=Clytia hemisphaerica|type=transcript|length=8783bp|location=Sequence derived from alignment at sc0000088:137851..146633- (Clytia hemisphaerica)
AATTAATCTTAACCTTAAAGCTTTGATATCAGCAAAATAGGATAATTAGA
TCCAATTTTCAACTTCATTTCTCTCTTTCAGTGTCAAGGTAAATAAAATG
AATGAGAAAATGACGTAACTGCCTTTCACTGGTTGAAATACAGTGCATCA
GAAATGATTGTACTGTATAAACATCATATCTCATCAAGCACTGCACATCA
TTATACATCACATCACCAAAATGAAACAAAAGAAAGTGAAAGAAGAAGGG
GAACATGAAGTTTGTATCACTGTCACCATCGCTAAAGCATCCATCACAGG
TGAGATATTCTGATAAAAAAAATGGCTTAGTTAGTGTTTTTCAGCATGTA
GTGAACACTTTATATCGTTTTACAATAAAATATTTATAAAGCTGGATGTA
CAATGGGAAGAAAAGTTTATCGTTTTTGGAATAAAAGATGAAAACATTTT
CATTCTACATTAGCTTATTATTTTTTGTTCTCTTGCTAAATTATTAAGAC
ATATTATTTCCCTTTTATGTTAAATGTAAAGATGTTTAAATATACGGTTC
AGAATTTGGAAGTATGACATAGGCATTTTAAGTCCAAACTTTATCTTCCT
TTTTAAGACCAATTACCAGACGGCAAAAAATCAGAAAGTGCGCCACAAGT
TCAAAACTACTTGCATTGTCAATACAAATTATTACCAGATGACAAAGATT
TTATTAAAAATGATATCGTTACTTTTGGTATGGCAGCCAAGATGTATGGA
GATAATGACTCCAAAGTCTTGAGGACCTGGAATGATGGAGACAAAACTTG
GGTTGCCTGGACCAGCACGTTAGAGAAATATTTATCACTACTCCTAAAGC
AAAGTTGATGGATAAATTAAAAAAGCGCTCAATAGTTATAGAGTGATTTC
ATACAAAAATTAAGATTTCATTTATATTGGATCCATAGCATTCTGTAGTA
CACTAAGCATACCTGATATTGTTGATATAACATTGTTTCCTTAAGAAGCA
ACAACCTTTGTTTCAGACAGTTTAATCTCTCAGAATCCTTTTCTGATAGA
ATCTCCCTGGATATCCTTACATATATTTATTTTAGATCCAATTTGTTATT
TTTTTGTTCAAATCCCATATTTGAAATTTCAATGGCATTTTTTTCAGTGT
TAAAGTACGAATTACACAAGACGTTCTACTCAAGATGTTCCAACATAAAT
TCGAATTAAAACTATGGGACACCAAAGATAAAGTATCTGCCAAAGCAAGG
TTTGATCGTCCAAAGGCCTTTCGACTTCCTCAGACTAAAACTCAAGATGA
GGTTGACTTAGAATCGTTAAAAAGTAAATTGAATAACGACAAAGGTATTA
TTCATCTTGGTGCTGGATCATCATCCTTGCTAGATCAAAATAGAGGTAAA
AAAATTTAAAGTTCTTAATCAATGTTGTTTAACTTGTTTCAACGTTTTCA
GCAATTGAGTTAATAATAACACTGGCTTTTAAGACACTCATTCACAAGTA
CTTATTGTGATGCAAGTAAAGTATATTCATCTGTTGGCTGTTCGCGGAGC
AGGGAGTGAGGTAGTCTATCCCCTTTTCCATTTGCGGTAGACCTTGGCGA
TCGAATGCTGAAGTGGAGCACCACATCTACTATCAGCTCCCAGTTACTTA
CCGCCTATCTTGGAGGTGACAGAGGATCCAAACCAACAACCCTTGGATTG
CAAGAGAATGCTACCGGGTCATAAAGTAGCTGCTTTTCAAAGAAGCTTTC
AAATTAAAGGCTACACATGTAAAATTTTCAAGGAATTTTTGAAGCGTATG
GATACTAGTTTTTTTAAATTCTTTATATTCTTCTTTTTTTCACAGTAGAA
AAGAAGGCTAACAAAAAAGTGAGCTTTGTTGGGAACTACCACACGAACGT
GAGTTTCCATTTTTTTTTGGTTCACTTTAAGTTGTTTCAGTTCTGTTTGG
ATCACCTAGGGGTCATTTCTTTAGCTATCAAAAGCCCGGTAGTACTTTGA
AATCGAAGAAAAAATCAAAATGCTATTGAAAGAAAACAATTTGAGAACAA
TCCTGAGATTTATTTAATAATCGACTTGATTTTTACTATTATAACAATCC
TAATTTAAAAGAATCATTTTTTTTATACAATGGAGGTAGGGGTGGACGAA
AACATTTCTAGGGAGTAATCCAAGAAAAATTTCCTGTTTTATTTTTCTAG
GGGTATCCACACAAGAATTTTTGTGACTTTTTGACTTTTTGAGAATGGAT
CAGCCTTAATGCATACTAGTACCAATAAAACCTGTTTTCTTTGCAAAAAA
AAAGATTCTTTGCTAACTTTTTTTACATCCCACAGGAGCCAGAGCAACAA
TCAAGCCATCAATTCATCAGTACCACTGACAGTAAAGTTGATGTCAAAGT
TCGACTCAATCATGCCAACCAACCAGAATTTAAGAATCTAATTGATTTAG
CATCGACCGGTGAAAATCCTTTAGCTGTAGACACTGAAGAAATCGATCGT
ATCAACAAAGGTAAACGGTTTTCTCTTCAGTATGCAAAAGTGCCGTTCCG
CTTGCATCAGGGAATTCGAATCTGTTTGTTTTTTTAATTTTTTTTGGAAA
TTTTGCTGTTGATCTTCGTCAACAAATCTGAATTATTTTTTCGTGTTTTG
AATATGGGTATTCCTGTATTTGTTGCCTGCTTTCCACTTTTCAAATCATT
TGGAGAAAACCTTGATTGTTCGGATTTACTTTGCTTTTTGAATGAGAAAA
TATCAATGTTTTATAAACTGAGGAAAGAAAATCTCGTTGTTTGACTACAT
TAAGTGGATATACATTATTGCGAGTACTAAATTTTGTGAAATTTGATCCA
CTTAATTTCAATCCATTTAATTCTAAGGTTTTAAGTGTGATAATGATGAC
GACAATCTGTTGGTCATAAAATAACAATTCTAAAAGCGCAGATGTATGTC
CATGGTTTAGAAATAATAATATGACATTCCTCTCGATAATATCCTTCCAA
CTCAATAAATATTATTTAAACTATTTTGAAGGAAATGAAGAATACAAGGA
GAAAATAAGTACGAAGACTGAAAGAGAAGACAATACACTGGCAGTACCGT
CAGCCAATAGGAAGAGTAGTAGAAGTAGTACACGTAATACCAATTCAAGA
AAATGTATGTTTTGTCATAAAATTACGTCATGAACACCAAGAAAGGTGGT
CAAATCTTTATCTATATCTTATATCGACATCGTATCAATATCAATGCAAA
TTCTTTATAGTACAGCTTTCAAAATTATCAGTCTCAAAGAGATACAAAAA
ATGTTTTATTTTCCGTCTCAATTTTAAGAATTTAAACTACATATTCTGAA
GGATCAATGTCAAATTCCATCTTACACAAAAACTTTTTTTTACTAATGTT
TTAGCATTACGTCATGGTGCATCGTCAGCATTACGTAAAATGGCGTCAAG
TAAACAAGACCATATCAATCAAAACGGGTTAGCTTGCATCGCAGTACCTC
TTTCCTCTCTCTTCACCAATTGTCTCTCCATCAGTAACACATTGGAAGAA
CCAATCTCATCGTTGGAAGAGGTCATTGTCATCTTATCCTTGGATAAACC
ATTGCTATCAGATTACCAAAGATTCAAACTAAATCCTATGGTGCTGACTG
TGAAATCAGCCAACTTAATGCCTAAAAATGGATTAGGTTATGATGAATTG
CGACATCAGTAAGTAAAATCCGCCCCACTCTCCCGCCAACTTTTCAAAGT
TTTTTTCTTTTCAAAAACAGTTAAAGTAAAGTGCTTGTAAAAATTATTAT
CTAGACTGAAATATTACGATGAATGTACAATTAACTCTTGAGGCTAAATC
AAACTTGAATGGTGATGGGGGATGTAGTTTGTTTGAATTCTATCATTCCA
AAAAAAAGTTTTTGACGCTTTTCCATTTTAAAGAACTCCGCCTCTTGTCT
TGGATTTTCCAGTTTTTTATTTACTGTTACCCCCTCCCTCCCTGCTTGAC
GGAAAACATGGGCGTTATTCGTTCTATTCTAATGAAACGACAAAAATCAT
TAATATCTCTTAAACAATAAGTGGCCAGGTTCGTTTTGGTTGTCACAATA
TCTTCAAGAAGTCACGAAATTTGAATCGAACGTAGGTCAAGACCCAGATT
ACTTTAGCTTTACTGCTATTGTATCCTCAAGATCCGACTGTTTTACTGTT
AAGCTTGGAAAAAGCACATCCTCGAATCTCAGGTTCCCTTTAAAATTTAT
CTCTTTCTCTTAAGTTGTCATCCAGCTTATGTGAAGTACAAATTCTATGG
CACTGTGGAACATCGGAGTTTTGCAAAAGAACACTCTAGAAACATCAAAT
TCAATGATAGCAATGTTATCCTATTAGGTATATAAACTTCTCTTTATACA
TAGTCTTTTGTTATGAAAATTAGTCCCACAAAAAAACGGGTGTTAAGGCC
GGCGCATTAATGAATCCAACATTCAATCCAACATTTCCAATTCATTGTTG
GACGAAATGTTAGACGAAAAGTCACGTGGAAAAATTCGAAAAGTTGCATG
AAAAGTCATTTACGCAAAAAAGTCAAACATTTTCATCCAACATGATTACG
CAAATGCATCCAACATTTAAAAAGCAACATAAAAGTGACGGCAATCTCAT
TAAAAAATGTTGGATGAAAAGTTTGACGGCGATCAAACTTCATCCAACAT
GATTTCCAACAATCTTCTTAAAAAGTTGCAATTTTATGACTTGCGCAAAC
GAACCCAACATTTGATCCAACAATAATGTTGGATCAAATGTTGGATTCAT
TTGCGCCGGCCTTAATCGAAGTATCAATTGACGTCAAATGAGCTCAGTAA
AGCTTAAATTGCAGACGTCATACATTCACTCACCATCTGAATAAGGCTAT
CACTGTGTCTCACTAACATTCTGCCGGTTGGTAGTGTGAAGGTTTCGATC
ACAGACTTGCACCGCACAAATTCCAAGCACTTCCAGGCAGGGTGTTTTAG
GGAAATATGGTGACTCTCTACCCTCACTACTTTACTAAAATAGGTGTCTT
TTTGGATTCCCCTTCGAAACCTTTTGGCTTATACTTCATTCGGGGGGGGG
GGCAGATTCCGAAAATGGGTCAGTCGGTATGAAAATAAATTTCTAGGGTC
GGAAGGTCAAGATAAAAATATGGTGACGTTTTGAGGCAGTAGACTAGATG
AGCGACTTTTTTGTTATTTTTATTGTGATGCTTTTTCTCACTGGGATGCA
TTTGCACTTTTTTAACAAAAAAAAATTATAAAGCCCTTTTCAAATTCAAT
ATTATTATTTTTTCGATTTTCGGAAAAGACAGGGTCGGTCGGACCCGTGG
CGCAAAAAATTAATTTAGCATTTGTGTCGTTTCGGGACGGTAAATATGTC
ATATGATCTCAAACATCTCTTAATTTTTCTTCTCCCAGGAACTTTGGATA
AGAATCATTTGTTTGAATATTTACGAGGACCACCATTGAAAATTGAAGTT
CATGATCGGGATATTAAAGAAACACCGAAAAAGAAGTCTTCGGTGTTCGG
TAGTAAACCCGAGGACGAAAATATTTTCAACACTGCTTACGCCGGAGGTT
GGTTTAATTTGAACGTTTCTTCTTATGATTGAGGGTGTGAAAATTATCTC
TACTATGGCAGTCTCAAAAGTGGATTCATTTGTTTATTTTCTTGTAGAGA
AACTAATTGCTAAGACTAAACCCTTCCAAATCTATTGGCAACACTATCAG
ATAGAAAGATGAGAATTTGAGATAGAAAATGCTTATTTTTCTAGTAAAAT
TTTAGGTTGAGGGGTTAGAAGGCATGACTGTGCTATCTATTTTTCTGAAA
AAAGTCCTCTATACTTTTCATCTACATAGTCAAAAAAAATCTTCATCTAA
TAAAAATTTCGACCATTGGTCTTATTCATCTATAGGGACGCTGTTAGGAT
TAACAAATCAAGCTAAAACAGACAGCAACACTTATGGTGTAGCGGAGTTT
GATTTGTCAGAACTCTTGAATGGGGAGCGCATTTTGCATCACACATCACC
TATTAGAGCTTGCAAACAATCCCATGATATTCTCAATAATAAGGGTAAGA
CATCATCAGTGTTCTACGTACAATTAGAGTGGATTAACACAGGGATACCA
AAAATTTTGAGTTACGAAAGTTTTGCGCTGTTTTTTTTTTTTTTGCTTTG
GGCGTACGATATTTCTGAATCGTGGAAATTGACCCTTTTTTCAAAATTCC
TTCGGTATTTCGAAATTCTGAAATTGTTTCGGTATCGGAAATCAATGAAT
TTTTGTTATGAAATTTCGGTATTATAAGTTATTATCCCCCTTTTTCGGAA
TTCATACATGAAAAAATAAATTTGATGAAAAATTAGTCAAAACGAGGAAA
AACACCCAAAAAATCGGTAACGGAATTGCAAGTATTTTTTTACGGAATTG
CAAGTATTTTTTCAAAATTATTCGGTATTTCGGAAATCGCAAACCCCTTG
CGCCCCCCCCATGTAGAATAAACTGACTTTTGGAGTCGCCTAAAATTATT
TCTGATCAAAACTTATAATCGTCAAGGTAAGGGTTTAAAGTTCAATGATG
TCGTCATCGTAATCTTTTCCTAAAATATGAAAATATGCAAAGTGACAAAT
TGTCTTGAAAATCAAAGATTCAAAACCTAAACCTCCTTGCTCCGTATCGA
TTTTTCATGCAAACTCAACTACCAAATAGTCACGGGAAAAACCCGCCCCT
TAAGACCCTAAACGAAATATCGTTAAATAAAAGTCTTTTTTCTTCCAAAG
CAGCATCTACAGTACCAGTCGGTGACTATCTAGAAAGTGGAAGTGAACTG
AAAATCAAAGTGGAACTGGTTCGTAGTCTAACGGAACAGTATTATGCGAT
AGACACACGTGACAACCCCACAAGTTTAATGTCCAGTACCTCAGTGAACC
AGCCAACACACGGTGAACAGCAGCAATTGCTTTCTAGCACGACAGTGGAC
AGTAAAGGCAATTTGGAGACCATTACAAGTTCACAAGAAGTTAATTTAAA
ACAACAAACTAATGACCAACCTTCGGTAATGGTTTTCTTTTCACGTTTGA
CTCAGCTTAAATTTCAGCCTTAACCAAACAGTATCTCCATCTCGCACAGA
ACGTTGTTTAAATGTCTCTTTAACAGCCATAACATTAGATGGATGTTAAA
AAGACGTTGTGTGCCAACATGGACGGATGCAGATCATTTTCCGAAATCTA
ATGGGTCTTTCTTTATAATTTTTTCATTCATTTTGAAGGTCAATATATGT
AAGTTTTGCATTAATTTGTCAAGTCTCGGGCCGCGCTATACATTTTTAAA
AATAGGCAACTCCTATTTTCGGTCAACCCTTGCCATTCGTTTTCCTGAAA
ATTCTGCTTTGATCATCCCTAATAAAATTATACCATTATTTAGAGTTGAA
TAACAACTGATCAATGACCCTTTCTTTTCTCAGTGCCCTTATGGCCGGAT
CGTTTACATCTTCGACTATAAAAACAAAGATTTTTTGGGCAAAATTCTTG
GTTTGACCACGGAAATCAATGCCAAATCGTTGGACTTTTGGACTTATCCA
AAACACGTGATCGAAGCTGCTCTTTCCACTTACAAGCTTTCCGAAAGCCA
ACAGAATGATCGGACATTGGATATTATTACTGGTTGCCAGGTAACCCTCC
TAACATGAAACTGCATATTATTTCAACAGTATACTCCCAGTTATTCAATT
ATCCAAGATAAGATCGAATTGTCTACCCCGACACGTGATATTTTTTTTCC
GCGGATGTCTCAAAAGTTAAGTGAGTGCTATCGATTAACGATGTTGATAA
TGTAGTAACTTACTCTGTCGTTTTGACAAAATATCGAATATTTTGAGGGA
AGTTAAAAATTGGAAAATCTCGGGGATTGATTAATCGGGAGTCTACTGTA
ATGCGCCTACTTCCTAGGCTACACTCCTATAAGATATGTTAGAGGTTTTT
ATCAAATCTTGACTTTGATTTATAGCAATAAGTAGAATATAAATTGTAGG
GTTAGACCTGGTACTTATTGAAAAAGTGGCGCTTTTCAACATTAACACCC
AAAAAGTTTTAAGGTCATGCTTTTCTCTTGAAATGAACCCGGTCTTCTTT
TGCGCATTTTTTTCTCATTCGTTTTGTTCCTTTCTCTTAGATCATTGATG
GTGAATATCACATTTTTGTTCTGGAAGGTTTGGCGCATCAAGGTGTCAAA
CGATTATGGGACGAGCTGGAACATCCAAAATTAGACGGTACGTTACTGTA
TTCTATTTATTTCTCATAAGAATCGGGTAATCTCGCTGGAGGTCCGGCTG
TTCATATGTTCATTTTCAACCAATTTTACTGCAATAGTATTAGTTTTTGC
TAATGTTTGTAATAAAAAATCGTAAAAGCTCCAATCCCATTCGATAGCTT
GAACTTTTCGTATGACCAGTTCAATAGGGTTTGTACAGTCTATCGTTAGG
GTGCGGCGCTCTTTTGAGTTGAGAGCGGTGTTCTACTTCTTTTCAAAATA
TTTTTTTTTAGGTGCGGCGCTTATTAGAGGGGTGCCATAAAGATATCTAG
AGATGAGTATTTTTTAAATAACCTTTATTCTTTCATGTCTTCAAAATGTT
ACAGGTGGAGGATTTTTCCGTGTGTTATACAATTCCGACATGACGTTTGC
CAACCGTTTGTATATTTCACTGGATGTGGATTTGGCAAGGATTCGATTGC
ATCAACCAATCAGTAACATTGTAAAGCAGCNGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004976XLOC_004976Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008888-exon-sc0000088-1575043694:146335..146633TCONS_00008888-exon-sc0000088-1575043694:146335..146633Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1575043694:145816..146026TCONS_00008888-exon-sc0000088-1575043694:145816..146026Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1575043694:145239..145486TCONS_00008888-exon-sc0000088-1575043694:145239..145486Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1575043694:144736..144785TCONS_00008888-exon-sc0000088-1575043694:144736..144785Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1575043694:144124..144298TCONS_00008888-exon-sc0000088-1575043694:144124..144298Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1575043694:143480..143602TCONS_00008888-exon-sc0000088-1575043694:143480..143602Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1575043694:142926..143229TCONS_00008888-exon-sc0000088-1575043694:142926..143229Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1575043694:142257..142369TCONS_00008888-exon-sc0000088-1575043694:142257..142369Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1575043694:141037..141195TCONS_00008888-exon-sc0000088-1575043694:141037..141195Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1575043694:140540..140698TCONS_00008888-exon-sc0000088-1575043694:140540..140698Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1575043694:139559..139830TCONS_00008888-exon-sc0000088-1575043694:139559..139830Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1575043694:138944..139150TCONS_00008888-exon-sc0000088-1575043694:138944..139150Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1575043694:138347..138443TCONS_00008888-exon-sc0000088-1575043694:138347..138443Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1575043694:137851..137979TCONS_00008888-exon-sc0000088-1575043694:137851..137979Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1510915933:146335..146633TCONS_00008888-exon-sc0000088-1510915933:146335..146633Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1510915933:145816..146026TCONS_00008888-exon-sc0000088-1510915933:145816..146026Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1510915933:145239..145486TCONS_00008888-exon-sc0000088-1510915933:145239..145486Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1510915933:144736..144785TCONS_00008888-exon-sc0000088-1510915933:144736..144785Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1510915933:144124..144298TCONS_00008888-exon-sc0000088-1510915933:144124..144298Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1510915933:143480..143602TCONS_00008888-exon-sc0000088-1510915933:143480..143602Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1510915933:142926..143229TCONS_00008888-exon-sc0000088-1510915933:142926..143229Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1510915933:142257..142369TCONS_00008888-exon-sc0000088-1510915933:142257..142369Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1510915933:141037..141195TCONS_00008888-exon-sc0000088-1510915933:141037..141195Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1510915933:140540..140698TCONS_00008888-exon-sc0000088-1510915933:140540..140698Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1510915933:139559..139830TCONS_00008888-exon-sc0000088-1510915933:139559..139830Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1510915933:138944..139150TCONS_00008888-exon-sc0000088-1510915933:138944..139150Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1510915933:138347..138443TCONS_00008888-exon-sc0000088-1510915933:138347..138443Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1510915933:137851..137979TCONS_00008888-exon-sc0000088-1510915933:137851..137979Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1491911889:146335..146633TCONS_00008888-exon-sc0000088-1491911889:146335..146633Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1491911889:145816..146026TCONS_00008888-exon-sc0000088-1491911889:145816..146026Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1491911889:145239..145486TCONS_00008888-exon-sc0000088-1491911889:145239..145486Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1491911889:144736..144785TCONS_00008888-exon-sc0000088-1491911889:144736..144785Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1491911889:144124..144298TCONS_00008888-exon-sc0000088-1491911889:144124..144298Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1491911889:143480..143602TCONS_00008888-exon-sc0000088-1491911889:143480..143602Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1491911889:142926..143229TCONS_00008888-exon-sc0000088-1491911889:142926..143229Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1491911889:142257..142369TCONS_00008888-exon-sc0000088-1491911889:142257..142369Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1491911889:141037..141195TCONS_00008888-exon-sc0000088-1491911889:141037..141195Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1491911889:140540..140698TCONS_00008888-exon-sc0000088-1491911889:140540..140698Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1491911889:139559..139830TCONS_00008888-exon-sc0000088-1491911889:139559..139830Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1491911889:138944..139150TCONS_00008888-exon-sc0000088-1491911889:138944..139150Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1491911889:138347..138443TCONS_00008888-exon-sc0000088-1491911889:138347..138443Clytia hemisphaericaexon
TCONS_00008888-exon-sc0000088-1491911889:137851..137979TCONS_00008888-exon-sc0000088-1491911889:137851..137979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:137851..146633 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.19838	8.94132	6.36371	5.90196	134.16	101.176	42.1545	46.8676	20.7241	34.4486	23.3701	28.9561	3.22073	2.67415	2.79623	4.91992	4.5357	5.7703	4.31729	4.66077	3.69879	5.23601	8.12853	8.45037	22.1745	33.0397	9.15718	9.01812	6.75669	7.30886
Blast
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BLAST of TCONS_00008888 vs. Swiss-Prot (Human)
Match: YC006 (Uncharacterized protein FLJ43738 OS=Homo sapiens PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.798e-45
Identity = 121/410 (29.51%), Postives = 190/410 (46.34%), Query Frame = 2 
Query: 1418 PAYVKYKFYGTVEHRSFAKEHSRNIKFNDSNVILLGTLDKNHLFEYLRGPPLKIEVHDRDIK-ETPKKKSSVFGSKPEDENIFNTAYAGGTLLGLTNQAKTDSNT----------YGVAEFDLSELLNGERILHHTSPIRAC--KQSHDILNNKASTV---------------PVGDYLESGSELKIKVELVRSLTEQYYAIDTRDNPTSLMSSTSVNQPTHGEQQQLLSSTTVDSKGNLETITSSQEVNLKQQTNDQPSCPYGRIVYIFDYKNKDFLGKILGLTTEINAKSLDFWTYPKHVIEAALSTYKLSESQQNDRTLDIITGCQIIDGEYHIFVLEGLAHQGVKRLWD-------ELEHPKLDGGGFFRVLYNSDMTFANRLYISLDVDLARIRLHQPISNIVKQ 2542
            P Y KY+F+ T  H++  + H  ++ F D NVI LG L  + L EYL GPP+ +EVHDRD K E   +K  +FG  P D  +            L +  +T++N           YG+A+   ++LL G + L+   PI +C  + +H   +++   V               P G+YLE+ S+LK++V++   L     A D                P  G  Q                                    +GRI+++FD+K    L  +L   T INAK+L   +YP   ++  LS +K+    Q  + LD++TG  ++DG+ H+F+LEGLA QG+++LW+         EH K      ++VLYNS + F +RLY  L+  L  + L QP   +++Q
Sbjct:    2 PVYCKYQFHKTPVHKTKGEPHGTHVYFQDINVIFLGALHPSDLREYLEGPPMVVEVHDRDRKSEECSQKPVLFGEDPLDSYL--------NFQALISPRETENNPFESQNKMWYPYGIAQVSFADLLLGHKYLNLAVPIHSCEVQPTHCGQDSRRRKVVGLGVPRDGHQHGPMPRGNYLEADSQLKLRVDIAVPLRAGARAAD----------------PDLGGSQ------------------------------------FGRIIFVFDFKKVSLLHSLLQDITMINAKALGLDSYPVRTLQQILSAFKVRVRVQEQQHLDVLTGFHLLDGKTHLFILEGLADQGLRQLWENHQSWIPRSEHRK------YKVLYNSQLLFRSRLYGDLEAILYHVHLFQPTELLLQQ 345
The following BLAST results are available for this feature:
BLAST of TCONS_00008888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YC0061.798e-4529.51Uncharacterized protein FLJ43738 OS=Homo sapiens P... [more]
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