TCONS_00008880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008880
Unique NameTCONS_00008880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length774

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008880 ID=TCONS_00008880|Name=TCONS_00008880|organism=Clytia hemisphaerica|type=transcript|length=774bp
ccagCGCCAAGATTCTTATCATTCTTATCAATTCATGGGACCAAAGTACG
ATGATAAATCCTATACACCAGAACCACCTTCTCAAGTGTCCGAATCAAAG
TCCATTTCGTTCTCAGTGTACGGCATCCGGGAGCCAGGACACGAAATTAA
AAATGGCGTCATGAGCATGATCACCAAGAAATTGGATTACAACACTCTGG
ACTTGATCAATCAACACATAGCGAGAAACCCTAAATGTAGACTTTCTTCT
AAGGATGTCGAGGTAAGATTTGCGGATCAGGTCCTATACACAGGTCATTT
GTGGTCACAGCCGAGTATCGGGATTCTAAAATGCGATACTAGGACtggcc
ttttgttctattctgactTATCATCTGAAGccataagtggtttcatttcc
catcctggAGTCTCGagtttttcggaaattttatcTATAAGCTTGTATAA
TCAttaatcgaccgccggaggcggtttctttcataatgatacgctaatct
cgttttgccttggctcattacttcgtctaccatttactttcggttttttt
aactagattacccagttgtttctcttttttttcgctgaatgtcttttatt
cggaattgaataatcgagacatgaaaaatgactatattgtaatctgtttt
caatgaataatctaaaatgcaCTGGAGATGACATGCAGGTGTTAATAATG
TGCTCTTTCGaaagcgtgatgcgtgatggaaggcggtcgtttcagtgtgg
tttagatccacactgtgacctagt
Run BLAST on NCBI

transcript from alignment at sc0000088:512237..513010+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008880 ID=TCONS_00008880|Name=TCONS_00008880|organism=Clytia hemisphaerica|type=transcript|length=774bp|location=Sequence derived from alignment at sc0000088:512237..513010+ (Clytia hemisphaerica)
ccagCGCCAAGATTCTTATCATTCTTATCAATTCATGGGACCAAAGTACG
ATGATAAATCCTATACACCAGAACCACCTTCTCAAGTGTCCGAATCAAAG
TCCATTTCGTTCTCAGTGTACGGCATCCGGGAGCCAGGACACGAAATTAA
AAATGGCGTCATGAGCATGATCACCAAGAAATTGGATTACAACACTCTGG
ACTTGATCAATCAACACATAGCGAGAAACCCTAAATGTAGACTTTCTTCT
AAGGATGTCGAGGTAAGATTTGCGGATCAGGTCCTATACACAGGTCATTT
GTGGTCACAGCCGAGTATCGGGATTCTAAAATGCGATACTAGGACtggcc
ttttgttctattctgactTATCATCTGAAGccataagtggtttcatttcc
catcctggAGTCTCGagtttttcggaaattttatcTATAAGCTTGTATAA
TCAttaatcgaccgccggaggcggtttctttcataatgatacgctaatct
cgttttgccttggctcattacttcgtctaccatttactttcggttttttt
aactagattacccagttgtttctcttttttttcgctgaatgtcttttatt
cggaattgaataatcgagacatgaaaaatgactatattgtaatctgtttt
caatgaataatctaaaatgcaCTGGAGATGACATGCAGGTGTTAATAATG
TGCTCTTTCGaaagcgtgatgcgtgatggaaggcggtcgtttcagtgtgg
tttagatccacactgtgacctagt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004972XLOC_004972Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008880-exon-sc0000088-1491911889:512237..513010TCONS_00008880-exon-sc0000088-1491911889:512237..513010Clytia hemisphaericaexon
TCONS_00008880-exon-sc0000088-1510915933:512237..513010TCONS_00008880-exon-sc0000088-1510915933:512237..513010Clytia hemisphaericaexon
TCONS_00008880-exon-sc0000088-1575043694:512237..513010TCONS_00008880-exon-sc0000088-1575043694:512237..513010Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:512237..513010 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0999141	0	1.74267	2.27407	0.131311	0.128822	0	0	0	0.182698	0.398219	0	0.264475	0.130443	0	0.0552182	0.607072	0	0.371242	0.108431	0.281014	0	0.18149	0	0.107056	0.0868325	0.181456	0	0.127017	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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