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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008869 ID=TCONS_00008869|Name=TCONS_00008869|organism=Clytia hemisphaerica|type=transcript|length=408bp
ACAACAAGATGAACATGTACCACAAAGCTTTGCTGTGTTGGAATTTCCAA
CGTGATATTGACcaagggaaagtcatgattaCCCAAGATGACATCTCAGA
CTATTTGATCTTTCCTGCGTGGGGTGATAGAACTAGCCTGTCATCTGATC
CTAAGTATGAACAACAATTTCACATGCCCGTACAACCACAGCAGACGACC
AGATACACTGGTCTTGAACTCGGCACCAAAATATCAAACTTGTTGAGTTT
GAGAGCACGTGAAGGTTACATCACTGATGGTATCCGTTTTCACCAAAGAC
AAGgAGGCAATTATATCATTGAAGTTAAACTTGTTTGGCCTTGGAAAGAA
AACGTGACCATTGAATACATAGCGAAATCTCAATGGCCATTTGATTCTGT
CAGGTATC Run BLAST on NCBI transcript from alignment at sc0000088:464134..468280+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008869 ID=TCONS_00008869|Name=TCONS_00008869|organism=Clytia hemisphaerica|type=transcript|length=4147bp|location=Sequence derived from alignment at sc0000088:464134..468280+ (Clytia hemisphaerica)
ACAACAAGATGAACATGTACCACAAAGCTTTGCTGTGTTGGAATTTCCAA
CGTGATATTGACcaagggaaagtcatgattaCCCAAGATGACATCTCAGA
CTATTTGATCTTTCCTGCGTGGGGTGATAGAACTAGCCTGTCATCTGATC
CTAAGTATGAACAACAATTTCACATGCCCGTACAACCACAGCAGACGACC
AGATACACTGGTCTTGAACTCGGCACCAAAATATCAAAGTAAGAGACAGT
TCTCTCTCATGGGGAATGCCTTTATAAATTATACGCAATCATTAGGGTTT
GGGCAATAATCTTTCGTATTATGGAGAGAACTCgacaaaaaataaagtat
tcTAAAAGTAGTCTTCCTCTTGACTACCACTGACATATGAGATCAGACTT
TTACTATAGGTCTGAACCTAGGTATGAGCGTCCGCCCATTTACAATCgat
agatgttcttataaattaaaaGTTGCAGTGATATGGCACACTGTAATATC
ATCAAAATGTAGCTTTGATTTCATTTCAATACTTTTATAGCTCCCATGTC
CTATATTGGTTGCTTTTGGACAATGAATGCTAAGATCCAAAACTAAAATC
CACGAACAAAGTTCATTTGAGCATTCGCTTTTCAGCTCTTCCGatcactt
tttatttttgaatcgCCATTTCTTTCAGCTTGTTGAGTTTGAGAGCACGT
GAAGGTTACATCACTGATGGTATCCGTTTTCACCAAAGACAAGGTTCGAA
GTCTATCTTTATTTCAACTCCAATAGCATACCAACAGCTAGCTTTCTTTT
CAATAGTTCACTAGCACAGGCActcttttctttcaaatttctcTTCGACT
GGAACACTGGACACTTTTTACGTCATATGATATTAAAACAGAGAAGTGAT
ATCCAAACTTTAGACGTAAATTCCCTATTATTATTGGCTTACTAGTTTTT
TATTATGAGctaaataaatataatttttttcaaaaagtataaaaacacTT
AAATAGTCACTTTTGAGACTTTCAATCAATTATGGAAGTAGCggattaaa
tttaaaaagtagtacctcaaattttaagttttaggGCTTCTACTTTCCAA
ATGCTATAGCTCTAAGCACTTCGGGACATAATGGCTGACCTTATCATCTC
CCTTCTTACTCCAAGCAGTTTAGGAAATTCTTCGGCATCAGGACGTCAAA
AACTGTCTGAAGTTATATTCATAGTTAACTCAGTAGTTGAACCTGGGTTG
GCTCAGATCCTGCAACTTATTGGTCTGTCCACTGCTCTTATGTTACGtaa
tttacatgtttttttttataagcattgcacttataagcatatctaggctc
agatatggggaaaaattaagcatatggcaagcattacttgagcctacgaa
aaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNtaagcatcccctcaagcatttttc
agccttattaagctttcgacctaagcatctctgagcctgttttcggattt
ttgtatgcttataaaaaaaaaacatgtaataaagaattttaaaaacttgT
GTGCTAGAATAAAATAGTTTCCATCGTCCATTAACTTAACACACGTGTTT
CtcattatattttcaattaggAGGCAATTATATCATTGAAGTTAAACTTG
TTTGGCCTTGGAAAGAAAACGTGACCATTGAATACATAGCGAAATCTGTG
AGTATTGTCAAACTATTGATGTTTCCCCACAataaaatgattcaattttg
aGCAGTTTAACTTTTGACACTGTAGCAATAGTTGTAAAGGTTGACATCGG
GTTCACTTTTTGATAGAATGGATGTCGCTTTAAAAATGGCCCGATGTTTT
ATGGTAGCTctcaatttttagcttttgcTTAAGACAAACTGGTAAAACTA
GACTCTAGTTTTGGTTGAAATGCATGGTCTTTGTGTGAGtataaccactg
acctttatatatccctggaccaagtttctcaataccggcaaagcaaaatc
tttgatcggagttttttgaaaagtggtaccttAATGGCGGCCTTACTCAA
tagtggtgtaaatgcatcgagagcgctaggtctccTTTTCCTCAACTACT
TTTGATGAtatagcgccgttagacgttaatttttaacattgcaatggctt
caaCTCGGGtaaccaattccaaaaaactccaatcaaaaatggcggatata
gcttggtccagggatatataaatgTGAGTGAGTATAACATAATGACGaca
ataaaaaatgacaattgattaatttatgttttgttatattttcagCAATG
GCCATTTGATTCTGTCAGGTATCAATTCCTTTGTTCTGTTTCCTAAATTG
GTATGCTATACTTTTGTTAAGCTACACCCCTCAAAATGTCcgaaaaaata
tgatttttgggttggaCAAGGAGCAATTaggtccgaccgttatttccaGC
TACGGTGTTTTTTAGTGTGCATTGTTTTTAGCCAGTTACAACGGTGACAT
TGAATAATCTCTTGCTTCATGTCATAGCAATCAAACACATGTCATCATCA
ATGTGAGTGGACAGTATGAATTTCTTGTCGACATCACTCAacaaaaaccc
aaaaaacaacaaagcaaaaagaaaccTTACAGGTAAAAAGTCAAGGGAAA
AATAGGGAAAGTCAATAAATCTTTGTAAAATACCTCTAAAAAAATTAGGG
AAAGCAAGAGAATCTTTTTCCAGAAAGTCTTGCATTTAGTGGTTAACAGC
CAATTttgaaatagctattttttgatttcgttcatttagaacaataaaaa
ttagGCAAAACCCATTTTCAGAAACAGCCGAGAACCCTGTTACTACTTTT
GATACCTATTGCAGAAGATGTTTAATTACTTTAATCACTTTACTTTATTT
ATAGAAAAATAGTGTTGCAAAGATTTGAACAGACCATGAGAAGGTATGGC
AGTCCCCATTCTGATCTCAGTTGAGTTTGACTTATTcgatttttgtgact
ttttgcacaaaggtgcgtTATCATTAACCCtggaatgtgacagagcccga
ttttcgggaaTGTCCCGAAGAAAgctgtttttctggattttctcgagatt
ttttcGGGATTCTCTCACTAGTTTTTCCTGCTTTCTTATTCATTTCGAAT
TAATGTTTTCTGTTGATATAGCCAGATAAGcacataaaagtatcacttat
TTTATTTCAGCTTGGAGCAATCTGATAAATTGCTTGTTCACCTTCAGTCT
TTCTCAAGCCAACCATTAGCCTCCAAGATACCGGAAACCATCGCTAAAGG
CTCTTCCGTCTTTTGTATGGCTTCTAATACTAATTCACCTGTGAGTACTT
TTTTCGTATCCACGACGCTCACAAATTACGCATGATTTTGAAGAGGAATT
CAAGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNaccaattccaaaaaa
ctccaatcaaaaatggcggatatagcttggtccagggatatataaatgTG
AGTGAGTATAACATAATGACGacaataaaaaatgacaattgattaattta
tgttttgttatattttcagCAATGGCCATTTGATTCTGTCAGGTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008869-exon-sc0000088-1491911889:464134..464371 | TCONS_00008869-exon-sc0000088-1491911889:464134..464371 | Clytia hemisphaerica | exon |
| TCONS_00008869-exon-sc0000088-1510915933:464134..464371 | TCONS_00008869-exon-sc0000088-1510915933:464134..464371 | Clytia hemisphaerica | exon |
| TCONS_00008869-exon-sc0000088-1575043694:464134..464371 | TCONS_00008869-exon-sc0000088-1575043694:464134..464371 | Clytia hemisphaerica | exon |
| TCONS_00008869-exon-sc0000088-1491911889:464812..464876 | TCONS_00008869-exon-sc0000088-1491911889:464812..464876 | Clytia hemisphaerica | exon |
| TCONS_00008869-exon-sc0000088-1510915933:464812..464876 | TCONS_00008869-exon-sc0000088-1510915933:464812..464876 | Clytia hemisphaerica | exon |
| TCONS_00008869-exon-sc0000088-1575043694:464812..464876 | TCONS_00008869-exon-sc0000088-1575043694:464812..464876 | Clytia hemisphaerica | exon |
| TCONS_00008869-exon-sc0000088-1491911889:466304..466380 | TCONS_00008869-exon-sc0000088-1491911889:466304..466380 | Clytia hemisphaerica | exon |
| TCONS_00008869-exon-sc0000088-1510915933:466304..466380 | TCONS_00008869-exon-sc0000088-1510915933:466304..466380 | Clytia hemisphaerica | exon |
| TCONS_00008869-exon-sc0000088-1575043694:466304..466380 | TCONS_00008869-exon-sc0000088-1575043694:466304..466380 | Clytia hemisphaerica | exon |
| TCONS_00008869-exon-sc0000088-1491911889:468253..468280 | TCONS_00008869-exon-sc0000088-1491911889:468253..468280 | Clytia hemisphaerica | exon |
| TCONS_00008869-exon-sc0000088-1510915933:468253..468280 | TCONS_00008869-exon-sc0000088-1510915933:468253..468280 | Clytia hemisphaerica | exon |
| TCONS_00008869-exon-sc0000088-1575043694:468253..468280 | TCONS_00008869-exon-sc0000088-1575043694:468253..468280 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000088 | supercontig | sc0000088:464134..468280 + |
Blast
The following BLAST results are available for this feature:
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