TCONS_00008845 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008845
Unique NameTCONS_00008845
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008845 ID=TCONS_00008845|Name=TCONS_00008845|organism=Clytia hemisphaerica|type=transcript|length=331bp
AGGAGCGAGCGACGCCTTGAACCTCCACAGAAATATGCCAGGTGGAGTAT
TTGAGCATTTCAATTTGTTGGCCAAAAAAGGGACGAAATTCGGACGACCG
GACACTTTGACTGAAGAATACGGCGGATATTGATTGTGTGATGGAAGTTT
GAAGATGGCTATCTTGGATATTATTTTTATTGTAATTTTTTGTACAAAGT
TGAGTTTGAAAAATATTTTGAATAAAATCTACCACAGGACGAGTCGACTT
CAAACCTTTCTAATAATCCATTCATACTTCTATCCCCTTGGTATTTAGAA
ACATTGAAGGAGAAATATATATGATTTAAAG
Run BLAST on NCBI

transcript from alignment at sc0000088:281484..282338+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008845 ID=TCONS_00008845|Name=TCONS_00008845|organism=Clytia hemisphaerica|type=transcript|length=855bp|location=Sequence derived from alignment at sc0000088:281484..282338+ (Clytia hemisphaerica)
AGGAGCGAGCGACGCCTTGAACCTCCACAGAAATGTAAGTTAATGTCCTT
ATTCTAGTTCTTTCTTAACTTAGGATTTAGTCTTATCAAAATTCAGTACA
CGATTtccttttttgatgttttattgAAGGGTCGTACCATTTTTTCAAGC
TTTGTGCGTTTTAAGTACAGTGGCAAGTTTACGTATTTGCCCTTTTGAAG
AACTACAGTGGAGTGACTGCAGCGATTTGAAATAATCTGGAGTTTTGACC
CGAAAAATCGAAGATTGTTAACCGTCCTCAGGtagtcaggatctagacaa
tcagaagctaaccgtccccgcagaaaaacacagataCATAAACTAGCTAG
TATAAGAATTATAATCGAGCGTGAAACCGTTTTTATTTTAGGAGAGTATG
CATACTGTCTGGGATCTAGCTAGGAAACCCTCAGCCTGCGAGCTTTCGCT
GGATCGCGAGAGCTCAGGATTTCCTGGCTAGTCTAGGTCACATATATCTG
TTAAGATTCGAATTTGTTTTTGTGGATTTGGTCATCTCTGTTTATAATTT
TGTTTTAGATGCCAGGTGGAGTATTTGAGCATTTCAATTTGTTGGCCAAA
AAAGGGACGAAATTCGGACGACCGGACACTTTGACTGAAGAATACGGCGG
ATATTGATTGTGTGATGGAAGTTTGAAGATGGCTATCTTGGATATTATTT
TTATTGTAATTTTTTGTACAAAGTTGAGTTTGAAAAATATTTTGAATAAA
ATCTACCACAGGACGAGTCGACTTCAAACCTTTCTAATAATCCATTCATA
CTTCTATCCCCTTGGTATTTAGAAACATTGAAGGAGAAATATATATGATT
TAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004964XLOC_004964Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008845-exon-sc0000088-1491911889:281484..281517TCONS_00008845-exon-sc0000088-1491911889:281484..281517Clytia hemisphaericaexon
TCONS_00008845-exon-sc0000088-1510915933:281484..281517TCONS_00008845-exon-sc0000088-1510915933:281484..281517Clytia hemisphaericaexon
TCONS_00008845-exon-sc0000088-1575043694:281484..281517TCONS_00008845-exon-sc0000088-1575043694:281484..281517Clytia hemisphaericaexon
TCONS_00008845-exon-sc0000088-1491911889:282042..282338TCONS_00008845-exon-sc0000088-1491911889:282042..282338Clytia hemisphaericaexon
TCONS_00008845-exon-sc0000088-1510915933:282042..282338TCONS_00008845-exon-sc0000088-1510915933:282042..282338Clytia hemisphaericaexon
TCONS_00008845-exon-sc0000088-1575043694:282042..282338TCONS_00008845-exon-sc0000088-1575043694:282042..282338Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:281484..282338 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0792018	0	0	0	0	0	0	0	0	0	0	0	0.00279309	0	4.33574	0	0	0	0.398735	0.472056	0	0.328839
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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