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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008843 ID=TCONS_00008843|Name=TCONS_00008843|organism=Clytia hemisphaerica|type=transcript|length=1244bp
TGAATCGAGTGAAACTAGGCCAAAAATGAcgtgcaaaaaaatgtaaacaa
aaataaagattgCAGCTGTTTTTTCGaacaaatcagaaaatttgatgGTG
AAAGGCAATGAGACACAAACACAAAGGAGGCAAATAAACCCAATAAAAAT
GTTGGGATCGGTCCAAATATCAGGTGAAGAGTTAGGTGATATCGAAACTA
ATGACATCTGCTCTTCTTTGAGACAGAATTCCATTCGACTGTTATCCATT
CGGGGATGCAAACTCCATGACAAAAACTATCGCCAAATCATGGAATCCTT
AAAAGAAAATTCTTCTCTTTCTCATTTAAATCTAAACCTTGGAGTTGTTG
ATAGTAAAGAAAGAGTTATATGGCTATCAGAAGGACTCAAGAATAACACA
GGAATAGAAACACTTTTATTGCATGGTAATCCAATACGAGATGAAGGATT
GTCAATATTGGTACCAGCACTTGAAAAACATCAAGGAATTTCTAATTTGG
ACTTGGGAGATTGCCTTATTGGTGATGATGGTCTTGCAGCTTTGTGCGGC
CTTGCTAAGCCGTCTAATAAGAAAAACTCTTCCCTATTACAATTGACACT
TACTGGAAATCGTGATATAACACAATCTGGCTGGGCACAATTAGCAATGG
CTTTAGCCTACTGTACAAATCTAAACAAACTTTATTTAGACTATAACAAC
ATTGGAGATTTCGGTGCTGGATTATTTGCAGTATCCCTCTCTGCAGCTAA
AAGTTTGGAGTACATTGATTTTGAAGGATGTGGTATTACGGATGCTGGTG
CAGAACTTTTATGTGATGCTATTGAATCGTATAATATTACTCTACATGAT
TTGAATCTAGCAGAAAATGATGTCAGTGAGGAGATTATTAAAGAGTTAAA
AGAATGTCTTCAAGAGAATAAAACACATAAGTATTCTCCCTAAAAGTTGT
GAAGGTTGTTTGGTCACACATTATTACAATGACTTTGAAATTTAATAGAC
ATTACtaaaaaagaaatggaagataATTGAGTGTACAAGTAAGTGTAAGT
AAAGCATGCTAGATTTTCATGAAATTATATTGATGATAACAATATAaata
gaaatctttttttcaaacgAACCTTTATAACAACGAATTAATGGAATATG
TATCATTTTTTCGAGACGTAAAAATGtgaggaaaaaagataaaagtatAA
CTTTTGTTACTTTTTGAAATAGCTCAAACGCGCTGATTTCAAAT Run BLAST on NCBI protein sequence of TCONS_00008843-protein >TCONS_00008843-protein ID=TCONS_00008843-protein|Name=TCONS_00008843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
MVKGNETQTQRRQINPIKMLGSVQISGEELGDIETNDICSSLRQNSIRLL
SIRGCKLHDKNYRQIMESLKENSSLSHLNLNLGVVDSKERVIWLSEGLKN
NTGIETLLLHGNPIRDEGLSILVPALEKHQGISNLDLGDCLIGDDGLAAL
CGLAKPSNKKNSSLLQLTLTGNRDITQSGWAQLAMALAYCTNLNKLYLDY
NNIGDFGAGLFAVSLSAAKSLEYIDFEGCGITDAGAELLCDAIESYNITL
HDLNLAENDVSEEIIKELKECLQENKTHKYSP Run BLAST on NCBI transcript from alignment at sc0000088:266853..269217+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008843 ID=TCONS_00008843|Name=TCONS_00008843|organism=Clytia hemisphaerica|type=transcript|length=2365bp|location=Sequence derived from alignment at sc0000088:266853..269217+ (Clytia hemisphaerica)
TGAATCGAGTGAAACTAGGCCAAAAATGAcgtgcaaaaaaatgtaaacaa
aaataaagattgCAGCTGTTTTTTCGaacaaatcagaaaatttgatgGTG
AAAGGCAATGAGACACAAACACAAAGGAGGCAAATAAACCCAATAAAAAT
GTTGGGATCGGTCCAAATATCAGGTGAAGAGTTAGGTGATATCGAAACTA
ATGACATCTGCTCTTCTTTGAGACAGAATTCCATTCGACTGTTATCCATT
CGGGGATGCAAACTCCATGACAAAAACTATCGCCAAATCATGGAATCCTT
AAAAGAAAATTCTTCTCTTTCTCATTTAAATCTAAACCTTGGAGTTGTTG
ATAGTAAAGAAAGAGTTATATGGCTATCAGAAGGACTCAAGAATAACACA
GGAATAGAAACACTTTTGTAAGTTTTTGTACAAACTTTGTCGTATAATGG
TTTGGATTGGGAGAACACAAAACGATCTATTACTATTGTATTGACTAACA
AATAATNTGTATATATAATGGTTTGGTTTGGATATTGGGAAAACACAAAA
CGATCTAATTAAGGACCCTGCCTACGCACCAGACTGTctgtgtatttgtc
cggtggcaaaaagtatcatttcgctacaccggacgcaataagtccggtgt
tagtccggtgttgcatacagggaattttggacgccggacatttacgaaac
aaaaaattaagaaacaacggacgcaccggactggtcatgtccggtgtttt
gattgtccggtggaagaaaatgtcattcttcttcttctccgacaccggac
atccgacttccttaagtcctgTGTAGAGAtttccggtggtaaaaaaaatt
ctcattttacaccggactttgaTGTGTctggtgttcgttaagtccggtgc
gtcgacaGGGTCCTTCTAATTATTGTATTGAATTACAAGTAATTCCAGCC
AGTAAAATGTGACAGATTATCTTGTACCTAGGTAATGACTGGattgtaaa
agacaaatcaattatatGCTGTTatctttataaaaatttatgctggagta
attagttattcaataaaCTATGGAGTTCTCCCACCAGCAAATGACTATTG
AATGCATAAAATAGATATAGATGGATAGAACTTTAATTTTCTAAGTGATG
ATTTCAACCAAAATGTTTAATTACACACAATTATCCAGATTAATCAAACT
CAATAATCATTTGGGAGAACGtaacagtcttttgaataactaattactgt
ACTCCAgcagaattttttaaattataatgTCATCTTATTGATTTATCTTT
TACAACACAGCACAGCAGTTACCTAGGGACAAGATGATTTATACTGCTTT
TAATTTACTGCCTGAatgaaagtaatgtatgtggagtaatttgttattca
attgaCCGTTGTGTTCTACTAAAAGACTATAACAAAACAATAtcaaacca
aaatattttggtaaaaGAGTTTTGATGCTAAAACATAGTTCTATGATTTC
TCACCCATTGTATAAAACATTAATACTAATTCTTTTAGATTGCATGGTAA
TCCAATACGAGATGAAGGATTGTCAATATTGGTACCAGCACTTGAAAAAC
ATCAAGGAATTTCTAATTTGGACTTGGGAGATTGCCTTATTGGTGATGAT
GGTCTTGCAGCTTTGTGCGGCCTTGCTAAGCCGTCTAATAAGAAAAACTC
TTCCCTATTACAATTGACACTTACTGGAAATCGTGATATAACACAATCTG
GCTGGGCACAATTAGCAATGGCTTTAGCCTACTGTACAAATCTAAACAAA
CTTTATTTAGACTATAACAACATTGGAGATTTCGGTGCTGGATTATTTGC
AGTATCCCTCTCTGCAGCTAAAAGTTTGGAGTACATTGATTTTGAAGGAT
GTGGTATTACGGATGCTGGTGCAGAACTTTTATGTGATGCTATTGAATCG
TATAATATTACTCTACATGATTTGAATCTAGCAGAAAATGATGTCAGTGA
GGAGATTATTAAAGAGTTAAAAGAATGTCTTCAAGAGAATAAAACACATA
AGTATTCTCCCTAAAAGTTGTGAAGGTTGTTTGGTCACACATTATTACAA
TGACTTTGAAATTTAATAGACATTACtaaaaaagaaatggaagataATTG
AGTGTACAAGTAAGTGTAAGTAAAGCATGCTAGATTTTCATGAAATTATA
TTGATGATAACAATATAaatagaaatctttttttcaaacgAACCTTTATA
ACAACGAATTAATGGAATATGTATCATTTTTTCGAGACGTAAAAATGtga
ggaaaaaagataaaagtatAACTTTTGTTACTTTTTGAAATAGCTCAAAC
GCGCTGATTTCAAAT Coding sequence (CDS) from alignment at sc0000088:266853..269217+ >TCONS_00008843 ID=TCONS_00008843|Name=TCONS_00008843|organism=Clytia hemisphaerica|type=CDS|length=1698bp|location=Sequence derived from alignment at sc0000088:266853..269217+ (Clytia hemisphaerica)
atgGTGAAAGGCAATGAGACACAAACACAAAGGAGGCAAATAAACCCAAT
AAAAATGTTGGGATCGGTCCAAATATCAGGTGAAGAGTTAGGTGATATCG
AAACTAATGACATCTGCTCTTCTTTGAGACAGAATTCCATTCGACTGTTA
TCCATTCGGGGATGCAAACTCCATGACAAAAACTATCGCCAAATCATGGA
ATCCTTAAAAGAAAATTCTTCTCTTTCTCATTTAAATCTAAACCTTGGAG
TTGTTGATAGTAAAGAAAGAGTTATATGGCTATCAGAAGGACTCAAGAAT
AACACAGGAATAGAAACACTTTTATTGCATGGTAATCCAATACGAGATGA
AGGATTGTCAATATTGGTACCAGCACTTGAAAAACATCAAGGAATTTCTA
ATTTGGACTTGGGAGATTGCCTTATTGGTGATGATGGTCTTGCAGCTTTG
TGCGGCCTTGCTAAGCCGTCTAATAAGAAAAACTCTTCCCTATTACAATT
GACACTTACTGGAAATCGTGATATAACACAATCTGGCTGGGCACAATTAG
CAATGGCTTTAGCCTACTGTACAAATCTAAACAAACTTTATTTAGACTAT
AACAACATTGGAGATTTCGGTGCTGGATTATTTGCAGTATCCCTCTCTGC
AGCTAAAAGTTTGGAGTACATTGATTTTGAAGGATGTGGTATTACGGATG
CTGGTGCAGAACTTTTATGTGATGCTATTGAATCGTATAATATTACTCTA
CATGATTTGAATCTAGCAGAAAATGATGTCAGTGAGGAGATTATTAAAGA
GTTAAAAGAATGTCTTCAAGAGAATAAAACACATAAGTATTCTCCCTAAa
tgGTGAAAGGCAATGAGACACAAACACAAAGGAGGCAAATAAACCCAATA
AAAATGTTGGGATCGGTCCAAATATCAGGTGAAGAGTTAGGTGATATCGA
AACTAATGACATCTGCTCTTCTTTGAGACAGAATTCCATTCGACTGTTAT
CCATTCGGGGATGCAAACTCCATGACAAAAACTATCGCCAAATCATGGAA
TCCTTAAAAGAAAATTCTTCTCTTTCTCATTTAAATCTAAACCTTGGAGT
TGTTGATAGTAAAGAAAGAGTTATATGGCTATCAGAAGGACTCAAGAATA
ACACAGGAATAGAAACACTTTTATTGCATGGTAATCCAATACGAGATGAA
GGATTGTCAATATTGGTACCAGCACTTGAAAAACATCAAGGAATTTCTAA
TTTGGACTTGGGAGATTGCCTTATTGGTGATGATGGTCTTGCAGCTTTGT
GCGGCCTTGCTAAGCCGTCTAATAAGAAAAACTCTTCCCTATTACAATTG
ACACTTACTGGAAATCGTGATATAACACAATCTGGCTGGGCACAATTAGC
AATGGCTTTAGCCTACTGTACAAATCTAAACAAACTTTATTTAGACTATA
ACAACATTGGAGATTTCGGTGCTGGATTATTTGCAGTATCCCTCTCTGCA
GCTAAAAGTTTGGAGTACATTGATTTTGAAGGATGTGGTATTACGGATGC
TGGTGCAGAACTTTTATGTGATGCTATTGAATCGTATAATATTACTCTAC
ATGATTTGAATCTAGCAGAAAATGATGTCAGTGAGGAGATTATTAAAGAG
TTAAAAGAATGTCTTCAAGAGAATAAAACACATAAGTATTCTCCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008843-exon-sc0000088-1491911889:266853..267269 | TCONS_00008843-exon-sc0000088-1491911889:266853..267269 | Clytia hemisphaerica | exon |
| TCONS_00008843-exon-sc0000088-1510915933:266853..267269 | TCONS_00008843-exon-sc0000088-1510915933:266853..267269 | Clytia hemisphaerica | exon |
| TCONS_00008843-exon-sc0000088-1575043694:266853..267269 | TCONS_00008843-exon-sc0000088-1575043694:266853..267269 | Clytia hemisphaerica | exon |
| TCONS_00008843-exon-sc0000088-1491911889:268391..269217 | TCONS_00008843-exon-sc0000088-1491911889:268391..269217 | Clytia hemisphaerica | exon |
| TCONS_00008843-exon-sc0000088-1510915933:268391..269217 | TCONS_00008843-exon-sc0000088-1510915933:268391..269217 | Clytia hemisphaerica | exon |
| TCONS_00008843-exon-sc0000088-1575043694:268391..269217 | TCONS_00008843-exon-sc0000088-1575043694:268391..269217 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000088 | supercontig | sc0000088:266853..269217 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001611 | Leu-rich_rpt |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00008843 vs. Swiss-Prot (Human)
Match: LRC73 (Leucine-rich repeat-containing protein 73 OS=Homo sapiens GN=LRRC73 PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 1.160e-49 Identity = 114/251 (45.42%), Postives = 171/251 (68.13%), Query Frame = 2
Query: 158 SVQISGEELGDIETNDICSSLRQNSIRLLSIRGCKLHDKNYRQIMEXXXXXXXXXXXXXXXGVVDSKERVIWLSEGLKNNTGIETLLLHGNPIRDEGLSILVPALEKHQGISNXXXXXXXXXXXXXAALCGLAKPSNKKNSSLLQLTLTGNRDITQSGWAQLAMALAYCTNLNKLYLDYNNIGDFGAGLFAVSLSAAKSLEYIDFEGCGITDAGAELLCDAIESYNITLHDLNLAENDVSEEIIKELKECL 910
S+QISGE L E DIC LR N++RLLS+RGC+L D+++ +I +L +SL+ LNLNLGVV S R+ L+E L+ N I++L LHG+P+ D GL++L PAL H + LDLGDC++GD+ + +CGL P K S L +LTL+ N IT GW++LA+A+A+ + + L LDYN +GD AG+ AV+++++++LE +D EG G+T+ A+ L D +E+Y L L LAEN +S E+ +++ + L
Sbjct: 5 SIQISGEPLSGAEVRDICRGLRDNAVRLLSLRGCRLCDRDFGRICRALAGATSLAQLNLNLGVVSSPSRIKQLAEALRTNRSIQSLFLHGSPLTDAGLALLNPALALHPALVALDLGDCMLGDEAINLICGLLPPDGAK-SGLKELTLSANPGITPKGWSRLAIAVAHSSQVRVLNLDYNPLGDHVAGMLAVAVASSRTLEVLDLEGTGLTNQSAQTLLDMVENYPTALRSLVLAENSISPELQQQICDLL 254
The following BLAST results are available for this feature:
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