TCONS_00008841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008841
Unique NameTCONS_00008841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008841 ID=TCONS_00008841|Name=TCONS_00008841|organism=Clytia hemisphaerica|type=transcript|length=1340bp
ttttcgtgaaaaaaaattcgattttgaaatctttgaaagaAATAAGTAGT
GTAAAAAGAAGCTAACACAAAATGAAATAAACGCTAAATAATCatgataa
attgtttttaaattaatGTCATCGCAAGGCTACTACAACTGCAGGTTCCA
TGGAAAGGGAGTATAATCATTCAGGGAATTATGTCATTAGTTAGTTGGAG
CTCCAGTTTTATTCTTTTCACGTTGACGGGTTTCAGGGGTCCCCGAAGTT
CTTTTTTTCCTGTTTCCATTTGAATCATTCATATTGGTAAATCTTTGTCG
TTTGATGCAAACAGGTAATAAATTTACAGCGATTTTTCggtagtttttat
ttttcaagacATAAATTAATGGATTCGCAATAGCCTTAAGTGACAGAATA
AAGACACCATATCGGACAGAATCTAATTTGTTTTGCCTTCCTGGCACCAA
TGTGTATATGAGTATTAATATGAACGCTGTTAATGTGAATCCAAAAAAAA
CTGCTATTAGGATCAGAACATTCTTAACAACACGTATCTCAATGACAGTC
AACCATTTATTCGCAGTATCTTTTATATTATCTAGTCCTTTGACTTGGTC
TTTTTGTACACCAGGTTGATTTAAGAGCTTTATTCCATTGACTTTTAGCT
GTTGACTATGTCCTTGTTTACCACTCTCGTGACATTCCTCACCGTTTACT
TTATCTCGAGAGTTCAATTCTTGCAAGGGTAGAACCACTTTCTGTTTATG
TCCTTGTTTACCACTCTCGTGACATTCCTCACCGTTTACTTTAACTAGAG
AGTTCAATTCTTGCAAGGGTAGAACCACTTTCTGTTTATGTCCTTGTTTA
CCACTCTCGTGACATTCCTCACCGTTTACTTTAACTAGAGAGTTCAATTC
TTGCAAGGGTAGAACCACTTTCTGTTTATGTCCTTGTTTACCACTCTCGT
GACATTCCTCGCCGTTTACTTTAACTAGAGAGTTCAATTCTTGCAAGGGT
AGAACCACTTTCTGTCTATGTCCTTGTTTACCACTCTCGTGACATTCCTC
ACCGTTTACTTCAATTAGAGAGTTCAATTCGTGCAAGGGTAGAACCACTT
TCTGTCTATGTCCTTGATTACCACTCTCGTGACATTCCTCACCGTTTACT
TCAATTAGAGAGTTCAATTCGTGCAAGGGTAGAACCACTTTCTGTCTATG
TCCTTGTTTACCACTCTCGTGACATTCCTCACCGTTTACTTTAATTAGAG
AGTTCAATTCTTGCAAGGGTAGAACCACTTTCTGTTTATGTCCTTGTTTA
CCACTCTCGTGACATTCCTCACCGTTTACTTTATCTCGAG
Run BLAST on NCBI

transcript from alignment at sc0000088:239690..241029+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008841 ID=TCONS_00008841|Name=TCONS_00008841|organism=Clytia hemisphaerica|type=transcript|length=1340bp|location=Sequence derived from alignment at sc0000088:239690..241029+ (Clytia hemisphaerica)
ttttcgtgaaaaaaaattcgattttgaaatctttgaaagaAATAAGTAGT
GTAAAAAGAAGCTAACACAAAATGAAATAAACGCTAAATAATCatgataa
attgtttttaaattaatGTCATCGCAAGGCTACTACAACTGCAGGTTCCA
TGGAAAGGGAGTATAATCATTCAGGGAATTATGTCATTAGTTAGTTGGAG
CTCCAGTTTTATTCTTTTCACGTTGACGGGTTTCAGGGGTCCCCGAAGTT
CTTTTTTTCCTGTTTCCATTTGAATCATTCATATTGGTAAATCTTTGTCG
TTTGATGCAAACAGGTAATAAATTTACAGCGATTTTTCggtagtttttat
ttttcaagacATAAATTAATGGATTCGCAATAGCCTTAAGTGACAGAATA
AAGACACCATATCGGACAGAATCTAATTTGTTTTGCCTTCCTGGCACCAA
TGTGTATATGAGTATTAATATGAACGCTGTTAATGTGAATCCAAAAAAAA
CTGCTATTAGGATCAGAACATTCTTAACAACACGTATCTCAATGACAGTC
AACCATTTATTCGCAGTATCTTTTATATTATCTAGTCCTTTGACTTGGTC
TTTTTGTACACCAGGTTGATTTAAGAGCTTTATTCCATTGACTTTTAGCT
GTTGACTATGTCCTTGTTTACCACTCTCGTGACATTCCTCACCGTTTACT
TTATCTCGAGAGTTCAATTCTTGCAAGGGTAGAACCACTTTCTGTTTATG
TCCTTGTTTACCACTCTCGTGACATTCCTCACCGTTTACTTTAACTAGAG
AGTTCAATTCTTGCAAGGGTAGAACCACTTTCTGTTTATGTCCTTGTTTA
CCACTCTCGTGACATTCCTCACCGTTTACTTTAACTAGAGAGTTCAATTC
TTGCAAGGGTAGAACCACTTTCTGTTTATGTCCTTGTTTACCACTCTCGT
GACATTCCTCGCCGTTTACTTTAACTAGAGAGTTCAATTCTTGCAAGGGT
AGAACCACTTTCTGTCTATGTCCTTGTTTACCACTCTCGTGACATTCCTC
ACCGTTTACTTCAATTAGAGAGTTCAATTCGTGCAAGGGTAGAACCACTT
TCTGTCTATGTCCTTGATTACCACTCTCGTGACATTCCTCACCGTTTACT
TCAATTAGAGAGTTCAATTCGTGCAAGGGTAGAACCACTTTCTGTCTATG
TCCTTGTTTACCACTCTCGTGACATTCCTCACCGTTTACTTTAATTAGAG
AGTTCAATTCTTGCAAGGGTAGAACCACTTTCTGTTTATGTCCTTGTTTA
CCACTCTCGTGACATTCCTCACCGTTTACTTTATCTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004962XLOC_004962Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008841-exon-sc0000088-1491911889:239690..241029TCONS_00008841-exon-sc0000088-1491911889:239690..241029Clytia hemisphaericaexon
TCONS_00008841-exon-sc0000088-1510915933:239690..241029TCONS_00008841-exon-sc0000088-1510915933:239690..241029Clytia hemisphaericaexon
TCONS_00008841-exon-sc0000088-1575043694:239690..241029TCONS_00008841-exon-sc0000088-1575043694:239690..241029Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:239690..241029 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32018	1.50684	0.589802	0.999802	0.0864952	0.16721	2.21934	1.86635	0.879769	0.571594	1.00585	0.40729	0.0556611	0	0	0.152921	0.0737549	0.199848	0	0	0.0466488	0	0.384117	0.327288	0.0336789	0.210404	0.0430124	0	0.283908	0.63306
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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