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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008840 ID=TCONS_00008840|Name=TCONS_00008840|organism=Clytia hemisphaerica|type=transcript|length=346bp
ctgaaaatacctagtttagtgaatcgcgaaatttaatacacgcgaaaatt
ttccagaagtcggcaatcgcgaaatttaatacacgcgaaacacgtttttt
caaTAAGGTAccataaaaaaacaataaagatTGATACCTTTTCTTCTTAT
CAGTCTAAGTTGTTCATGAAAAACAGACTGATCATATCTGTATTCGAATG
CCCCATAAATTTCACCGTCACTTTCACCAGAATTCGGCGTGTTTTTGAAG
GAGAGGCGATCAAAGAATGATTGAACATTCGTGAcgtcatgtttcttaaa
atgaTACTTGTAATACCAATTCTCCTTTTGCATGTAGCTGGTAAcc Run BLAST on NCBI transcript from alignment at sc0000088:239172..246292+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008840 ID=TCONS_00008840|Name=TCONS_00008840|organism=Clytia hemisphaerica|type=transcript|length=7121bp|location=Sequence derived from alignment at sc0000088:239172..246292+ (Clytia hemisphaerica)
ctgaaaatacctagtttagtgaatcgcgaaatttaatacacgcgaaaatt
ttccagaagtcggcaatcgcgaaatttaatacacgcgaaacacgtttttt
caaTAAGGTAccataaaaaaacaataaagatTGATACCTTTTCTTCTTAT
CAGTCTAAGTTGTTCATGAAAAACAGACTGATCATATCTGTATTCGAATG
CCCCATAAATTTCACCGTCACTTTCACCAGAATTCGGCGTGTTTTTGAAG
GAGAGGCGATCAAAGAATGATTGAACATTCGTGAcgtcatgtttcttaaa
atgaTACTTGTAATACctaataaaattgaagataaaACTTAAAAGTTTAC
CTCAGTTTAATTTGAGGGGCAGGAACGTTTTCGAAGTcagtaaataaaaa
aatgttcttctgaaaagatattttactgTTAGAGCTTTTCCGAATTCCCC
AAAATTAATAATTTATTTGGACAATTCAAAAAGTGGAGTAAAAAAACCGC
AATAAAACAAGAGTTgatttttcgtgaaaaaaaattcgattttgaaatct
ttgaaagaAATAAGTAGTGTAAAAAGAAGCTAACACAAAATGAAATAAAC
GCTAAATAATCatgataaattgtttttaaattaatGTCATCGCAAGGCTA
CTACAACTGCAGGTTCCATGGAAAGGGAGTATAATCATTCAGGGAATTAT
GTCATTAGTTAGTTGGAGCTCCAGTTTTATTCTTTTCACGTTGACGGGTT
TCAGGGGTCCCCGAAGTTCTTTTTTTCCTGTTTCCATTTGAATCATTCAT
ATTGGTAAATCTTTGTCGTTTGATGCAAACAGGTAATAAATTTACAGCGA
TTTTTCggtagtttttatttttcaagacATAAATTAATGGATTCGCAATA
GCCTTAAGTGACAGAATAAAGACACCATATCGGACAGAATCTAATTTGTT
TTGCCTTCCTGGCACCAATGTGTATATGAGTATTAATATGAACGCTGTTA
ATGTGAATCCAAAAAAAACTGCTATTAGGATCAGAACATTCTTAACAACA
CGTATCTCAATGACAGTCAACCATTTATTCGCAGTATCTTTTATATTATC
TAGTCCTTTGACTTGGTCTTTTTGTACACCAGGTTGATTTAAGAGCTTTA
TTCCATTGACTTTTAGCTGTTGACTATGTCCTTGTTTACCACTCTCGTGA
CATTCCTCACCGTTTACTTTATCTCGAGAGTTCAATTCTTGCAAGGGTAG
AACCACTTTCTGTTTATGTCCTTGTTTACCACTCTCGTGACATTCCTCAC
CGTTTACTTTAACTAGAGAGTTCAATTCTTGCAAGGGTAGAACCACTTTC
TGTTTATGTCCTTGTTTACCACTCTCGTGACATTCCTCACCGTTTACTTT
AACTAGAGAGTTCAATTCTTGCAAGGGTAGAACCACTTTCTGTTTATGTC
CTTGTTTACCACTCTCGTGACATTCCTCGCCGTTTACTTTAACTAGAGAG
TTCAATTCTTGCAAGGGTAGAACCACTTTCTGTCTATGTCCTTGTTTACC
ACTCTCGTGACATTCCTCACCGTTTACTTCAATTAGAGAGTTCAATTCGT
GCAAGGGTAGAACCACTTTCTGTCTATGTCCTTGATTACCACTCTCGTGA
CATTCCTCACCGTTTACTTCAATTAGAGAGTTCAATTCGTGCAAGGGTAG
AACCACTTTCTGTCTATGTCCTTGTTTACCACTCTCGTGACATTCCTCAC
CGTTTACTTTAATTAGAGAGTTCAATTCTTGCAAGGGTAGAACCACTTTC
TGTTTATGTCCTTGTTTACCACTCTCGTGACATTCCTCACCGTTTACTTT
ATCTCGAGAGTTCAATTCGTGCAAGGGTAGAACCACTTTCTGTTTATGTC
CTTGTTTACCACTCTCGTGGCATTCCTCACCGTTTACTTCAATTAGAGAG
TTCAATTCGTGCAAGGGTAGAACCACTTTCTGTCTATGTCCTTGATTACC
ACTCTCGTGACATTCCTCACCGTTTACTTTAATTAGAGAGTTCAATTCTT
GCAAGGGTAGAACCACTTTCTGTTTATGTCCTTGTTTACCACTCTCGTGA
CATTCCTCACCGTTTACTTTAACTAGAGAGTTCAATTCTTGCAAGGGTAG
AATCACTTTCTGTCTATGTCCTTGATTACCACTCTCGTGACATTCCTCAC
CGTTTACTTTAACTAGAGAGTTCAATTCTTGCAAGGGTAGAACCACTTTC
TGTTTATGTCCTTGTTTACCACTCTCGTGACATTCCTCACCGTTTACTTT
AACTAGAGAGTTCAATTCTTGCAAGGGTAGAACCACTTTCTGTTGATTCT
GAGGAGATAGTAGCTGTCTTGGCAAAGCTTTCATTCGAGATATCCGCATT
TCTCGAACTATCAACAAATAAAACAATGGCAGAAGCACCAAAACAAGGCA
AAAAGCGACAAGGTTGATAAACGCAAAATATTGCAGTTTAATAAACAAAA
TGGAAGGCCCAGCAATGGAATATATGTACACAGCCATGATCAGAAAAATA
ATACGATTCTTTGATAAGATATCCATATGTTTGGATGGCTTGGAGACTTT
GGTGTAATTGCTAACAGCGATTAGCATGATCACTAAGGAGGATGACCAGG
TATAAACACCATCAACATATATAATGTGTAAAGGTTTTGTTGGTAACACT
GGATTCCCCATATAAGTCACTATCTTTAAAGGCAACGCTACCAAACAGAA
GAATAGATCTGAGATGTTCAACGCCAATAGTAATCGTTCTTGATTCCCAT
AACGCAGAATGTTTGTCGAGCGATATTTCAATAAGCAATAGAATGTGATT
AGATTGATAGCTCCGCCAAACGCTGACACGGGAATGTTAGCTGCTCCTAG
GTAAAAATAATCCATACTTCTTTTTTTTCGATTCAATTTACCAAGTTTAA
AGTTTAAGCTTTCTTTTAAGTCCCTTTTCAGTTTCTATTGAGATGCTCCT
ACAACGTTTGAAAGCTTTTTCATTTTGTAGCGATTTAAAGAAGgatcaag
aaaaagtaaaaattattgAACAATAAACACAAAGTAAAATGAGCAGATGT
AAAATCctgcttaaccctattcatacaaGGCTTTTAGCGGTGGTTTAAAA
CTAAATCAAGAAGAAACGTTGCTTTGGCCAAGCGAAATATGATTTCAACA
CATTTTCGCAGCTTGTGATGAGTACTTATTAAACCATTAACACtttttga
ttattattttttattatcaaggtaaaaaatacttaaaatctgAATGGCTA
AGAAAGAAGTGATATTCCCGTATTTCATACTTAACACGTAAAATGCGAAA
CCGCGTTCAACATAAGGTACAATCTTTATGCTTAGTACAAATAATTTCCC
CTTGATAgggaaaaacacaaattaatCGAAACAATTTTGATACTTTTAAT
CTAAAAACagtaaaagagaaaaacaacatgAAAAAGACCCAAGCatcagc
tttttgatattgttcAAGTAGACAATAAACCAGTTATCAACACACTCCTA
CTCAAAGAATATGTGATGAAAACTTACTCGACGTGGGTTCAGCCAATTCA
AGCAGAGAGCTTTTATATGTGATACAAATAAGATTTACCAGGAATTGTGC
TAATTGAAGATATTTTGTAGAAAAGGTGTTGCAAAACATTTTGGTCttgt
taaaaagaaacaaagattATAATAACAAAGACCTTTTAGTATATTCTTGT
AATCTAAAGTAGGGCTCATCTTTTCATTGGGAAAGCTCAGAGGTTTTTCT
TTGAGTCGGTTGCCCCACGCTAAATGGAGAGGAGACCTTTAAATCTTTCC
ATTGGGAAAGCTCAGAGGTTTTTCTTTTAATCGGTCGCACCACGCTAAAT
GGAGAGGAGACCTTTAAATCTTTCCATTGGGAAAGCTCAGAGGTTTTTCT
TTTAATCGGTCGCCCCACGCTTAAAGTGGAGGAGAGATCTTTAAATTATT
CCATTGGGAAAAGTATATAGATTACATCTACAACTACAATAATGattctt
caaaattcaaatttattttattaaaaggtGGTCCTCTAAGAAGCTGTCTT
TTTACAATCGCTTGttgttacaattttctttagGTAAAGTTTTCTTCCCT
TGACTttaaattgaatgtttttgtctttcatttgagcattGAGCTCATTT
GCTCTATTGCACAATTCTTTGATTGTCAATCGTTCAATAATTGTGAGGTC
TTCTGTTGCTCGATAGGATGAAGGAAGGCCTTTGTATGTCGTGATGGCTC
TCAAGACTTtgttcttgtcttcttcattttcgaatacTACCTTGATTGGT
CGATACCTCCCTTCCTCCTCTCTCTCTTCCGTGAATACTCCAATCATCTG
tgtgtttataatttttatgtCCTTGATACCCAGTTGTATTCCAAGGATTC
TGTACTTGATAAATCTTTCGTCGTAGATTTTCGTTGTATTCTCGGGATCC
TCCAGATGTTCTTGGTTCCATGGAAAATTAGGTTACATGCTGTGGATCGT
TGTTTGCCGACTGTTTCACATCGAGTTATTTTCTCCaccttatttgattt
ttgattcatCTGTTTGGATACAGCTTCAGCATAACTAACCTCTTCCGCCT
CTTGCTTCTTTTCGATTAAGATGTTCTTGATCCTTGTCTCTATCTTTTTT
TCgagtatgctcatctttttttccaggctttctttgatttcttttgtaag
aaaGTTCACATCATTTGATTTCAGTCgggaaatttcttcattttgtacTT
TCATGGATGTTTTCAAATGctttaatttccttttgaaGTCTTTCGATTTT
GGTGTTTCTGCATGTTTTAACTCGTTCAGTCAGCTCTGACGAGATCTTAA
CGCAACTTTGGCATTGAAGATTTCGAGATTTAAACGTTAACCAAATCTGT
ATTTGGTAGATTGGTAGCTCGGAACAATCATAATGAACATCTCGATGGCA
CTTCCTACAGGTCAGAGTGTCTTTTGGTGTTGTTTCTTCTCTAATAATGC
ATTTTTCTGAGGTGCAAACCTCATTTTTAAGCGGCAATTCTTGgtcattt
tcatgattttttcctcCATTTTCCTTGCGAGATTCGCCAGCTTAAAAAAA
GACGTCTTGATGCGAAAAAGTATTTTGACGTAATTTTCTTCATTGATATT
ATTCCATTCAAACTATCACACTCGGAATGTTGTTGAAAACGAACCTCTTT
TAATTAGAAttcaattcacttttttgaggtTAAAGATTTGGAAGATTATG
TTGTTGGTGTTTCCACAAGAAAAATAAgattaccttattggaactaattt
tcgcgggaactaatttttgcaaacgaaaaaaaatatccgaaaattGCATT
TCAtgggttttaatttttgcgggtttcttcattctggaattttcgcgggt
tttaatttgcggtgttttgcccttttttggacaaatttctttcatgtTCC
TAGggattcttcaaatttttcgataaattggaaaaaattgtatttcgcag
caattaattttcgcggtttttaactctcaaaatttttggcGATTTTAACG
AAAAACCActaaaaacgctaaaattaatttctgcaaaaattagttccaat
aaggtagatGCGAAGGTttattattgtttcaattgcTCAAAATCCATGAC
AGTTGATTGCATGTCCTAACAAAGATCACTCACTGTATTTATGGTCAAGC
GCGTTAAAGAACTGAGACTTTGTAGAACACCCGATTTCTCAATAAACTGC
acaaaaacactcacaaaatggtaaaaatgaacacaagttcagaacatttt
tttaagatttgaaatataaaagttaagaacatccaaaggtttaaaaaaat
ttggatgtttttataaaaaatgtgtatcaaatTTAGAGTTACAGCCATCC
AGCCATCGACAACACACAAACACCTTAGGATGACGGACCCGGGGGGGgta
tttaggcaaaaataggtgctgggtatgtgcggacggtaagggtcgggttt
caaagtctctctaagggttacaaaaatcaggaaatttcaaagtagtctct
ctaagggtgggaaaaatcacgatttttagaaaaaaaatttgattttgNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCA
GGATGACGGATAAAGTTGTATGAGAGAATTCAGCACGAAAAGCAAAATAT
TCATATTGAAGACATATCCAAACTTGAAATGATGAACTAACGtctatttc
aaaaaatggcAGTTGGTACATTTTGATACAAAGAAAACGATAGAAAACAT
AATTAAATCTttaaactaaataaaaataaaaattaattcttaagaaattt
ATGTAGAGCAGAtgagttttaagtttttaattttcgaTTCAAAGAATATC
TTAAGCTTAGCTTACGATTTGTTTTTTACACACTTCAAAAGCTGCGAGCT
TCACTTATTTCTAGATCATTTAATTTGtcatttttggctattttagaCAG
CATTTCTTTAGAAATAGTTTCAATGATAGTACTTTACATACCAATTCTCC
TTTTGCATGTAGCTGGTAAcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008840-exon-sc0000088-1491911889:239172..239483 | TCONS_00008840-exon-sc0000088-1491911889:239172..239483 | Clytia hemisphaerica | exon |
| TCONS_00008840-exon-sc0000088-1510915933:239172..239483 | TCONS_00008840-exon-sc0000088-1510915933:239172..239483 | Clytia hemisphaerica | exon |
| TCONS_00008840-exon-sc0000088-1575043694:239172..239483 | TCONS_00008840-exon-sc0000088-1575043694:239172..239483 | Clytia hemisphaerica | exon |
| TCONS_00008840-exon-sc0000088-1491911889:246259..246292 | TCONS_00008840-exon-sc0000088-1491911889:246259..246292 | Clytia hemisphaerica | exon |
| TCONS_00008840-exon-sc0000088-1510915933:246259..246292 | TCONS_00008840-exon-sc0000088-1510915933:246259..246292 | Clytia hemisphaerica | exon |
| TCONS_00008840-exon-sc0000088-1575043694:246259..246292 | TCONS_00008840-exon-sc0000088-1575043694:246259..246292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000088 | supercontig | sc0000088:239172..246292 + |
Blast
The following BLAST results are available for this feature:
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