|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008838 ID=TCONS_00008838|Name=TCONS_00008838|organism=Clytia hemisphaerica|type=transcript|length=2730bpRun BLAST on NCBI transcript from alignment at sc0000088:177851..190481+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008838 ID=TCONS_00008838|Name=TCONS_00008838|organism=Clytia hemisphaerica|type=transcript|length=12631bp|location=Sequence derived from alignment at sc0000088:177851..190481+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008838 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2) HSP 1 Score: 252.677 bits (644), Expect = 8.099e-72 Identity = 192/682 (28.15%), Postives = 325/682 (47.65%), Query Frame = 3
Query: 237 FRVKVTTGKAKGAGTNATINIKLIDHEGNVSDSHVLDKWLHNDFEYGKIDSYTIYVDESFGQCEHIILHRDEIGLNDSWYXXXXXXXXXXXADAHFPLSRWLPANTEMQFKKFDSQLPQVVKKENPEVYDQRQAELDQKKVDFA-YGPVAGITGMPRTVSTLPPEESFHRNYVFDLLETKITGVVSKYLKKMR--YEDEFESFNDMYKIYYGPFSPFGVPDGHSGWRTDEKFARLRLTGPNCTVIRGVKKDGGLPKNFPVDKDNLAKHFMEGQSFQQAQDADRLFYIDFKDLDGYIAKSSG----KPMVAPLALFYARMDGTLIPLAIQLFQQNAEDNPIFYPPPIDDEKVWCHAKFWFGVADSNYHEPVTHLLQTHLVAGDFITCFHHMISPSHPVYKLMLPHFIFLLNINTDGMPVLTADDGAFNKILTFGLENCYDLMHKKYKTFELKNAYLKTDKEIRGV---ENLPNYHYMEDSEAIFEAIENYITSTIKTIYGDDDKNLEDDFEMQNFAKLLCDKTEGMRGVWGDG---AFTKLDDLSKTLSTMVFILSNVHAAANFNQYDEYGYPPNLPFRLDGAPPTNKSPVT-EDFLVKLFDVNVTLETLDLGRTLSLQGTNK--IGIY-ETHYEFKPEIFQHYLNFIQALEKVSDENDAKNAKRSYPYIWLSPKIVPNSISI 2231
+ V V TG AGT+ I + L+ G S+ H+LDK +NDFE G +DSY + VDE G+ + + + + + LND WY++++T++ FP RW+ + E+ + ++L + + + + +++ E QK+ + + P ++ + LP + F D + + + ++ + ++ + F D KI+ S + W+ D F L G N +IR + LP+ PV + + S +Q +F +DF+ LDG A + + + AP+ L Y + ++P+AIQL Q ++NPIF P D + W AK W +D + H+ +THLL+THLV+ F + + HP++KL++ H F + INT L + G F+K G ++ + K + + RG+ E++P Y Y +D ++EAI + T+ + IY + D+ +E+D E+Q+F + GMRG G + + LS+ L+ ++F S HAA NF QYD + PN P + PPT K VT E + L D + L LS N+ +G+Y E H+ KP + + F + LE + +N K+ PY +LSP +PNS++I
Sbjct: 4 YTVTVATGSQWFAGTDDYIYLSLVGSAG-CSEKHLLDKPFYNDFERGAVDSYDVTVDEELGEIQLVRIEKRKYWLNDDWYLKYITLKTPHGDYIEFPCYRWITGDVEVVLRDGRAKLARDDQIHILKQHRRKELETRQKQYRWMEWNPGFPLSIDAKCHKDLPRDIQFDSEKGVDFVLNYSKAMENLFINRFMHMFQSSWNDFADFEKIFVK-ISNTISERVMNHWQEDLMFGYQFLNGCNPVLIRRCTE---LPEKLPVTTEMVECSLERQLSLEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPS--DAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTF-TAEVVDIYYEGDQVVEEDPELQDFVNDV--YVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKP-VKEAMARFRKNLEAIVSVIAERNKKKQLPYYYLSPDRIPNSVAI 674 The following BLAST results are available for this feature:
BLAST of TCONS_00008838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.