TCONS_00008831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008831
Unique NameTCONS_00008831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2194

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008831 ID=TCONS_00008831|Name=TCONS_00008831|organism=Clytia hemisphaerica|type=transcript|length=2194bp
CACTTTTTTATTGCAACATTTAACCTGGTTAAGATGTTTGGTGGAGGACA
CAAGAAATTTCGAGTCAAAGTGACGACAGGAAAAGCTAAAGGAGCAGGGA
CCAACGCTACCATCAACATCAAATTGATTGATCACGAAGGAAATGTATCT
GAATCTCATGTTCTTGATAAATGGCTTCACAATGACTTTGAATATGGAAA
GATTGACTCTTACACTATCTATGTTGAAAAAACCTTTGgTCGATGCGAAC
ACATCATCTTGCATAGAGACGAGATTGGTTTGAATGACAGCTGGTACGTT
GAACACGTGACTGTTGAACATGAAACCGAGGCTGATGCTCATTTTCCATT
ATCGCGATGGCTACCAGCAAACACAGAAATGCAATTCAAGAAATTTGACT
CACAACTTCCACAAGTcgtgaaaaaagaacatccagAAGTTTACCAACAA
CGTCAGAATGAGTTGgatcaaaagaaaaaggacTTTGCTTATGCACCTAT
TGCTAATAAAGAAAGAATGCCTAGAACAGTAACTTCATTGCCACCTGAAG
AGACTTTCCATCGTAATTATATCTTCGACCTTTTGGAAACGAAATTTACT
GGAGTAATCTCACAATATTTGAAGAAGATGAGATATGAAGATGAGTTTGC
ATCTTTCGATGACATGTACAAAGTCTATTATGGACCACTTTCACCTTTCA
CTGTCCCAGCTGGTCATTCTGGATGGAGAACAGATGAGAAATTTGCACGA
TTGAGATTGACTGGACCTAATTGCACTGTCATCCGTGGTGTCAAGAAAGA
TGGCGGTCTACCTACAAACTTTCCAGTGGATAAGGACAATCTGGCAAAGC
ATTTCATGGAGGGACAATCATTCCAACAAGCTCAAGACGCAGACCGTTTA
TTTTACATCGATTTCAAAGATTTGGATGGTTACATTGCAAAGTCTTCAGG
AAAACCCATGGTTGCTCCTCTTGCGCTATTTTACGCGAGAATGGATGGCA
CTCTTATTCCTTTGGCTATTCAACTCTTCCAAAAAAATGCTGATAGCAAT
CCcATCTTCTACCCTCCACCAATCGATGACGAGAAAGTGTGGTGTCACGC
CAAATTTTGGTTCGGTGTCGCTGACTCCAACTACCATGAACCAGTCACAC
ATTTGTTGCAAACACATTTAGTAGCTGGAGATTTCATCACTTGTTTTCAT
CACATGATTTCACCCTCTCACCCTGTTTACAAATTGATGTTACCTCATTT
TATATACCTTCTTAACATCAACACAGATGGTATGCCAGTTTTGACCGCTG
AGGATGGCGCTTTCAACAAAATCCTGACCTTCGGACTTGATAATTGTTAT
GATCTCATGTACAAAaaATACCAAACATTCAAGTTGAGCGATGCATACTT
GGCCACTGATTTATCGAACAGAGGAGTTGAAAACCTTCCCAACTATCATT
ACATGGAAGATGCAAAGCCCATGTTTAAAGCCATCGAAGATTATATCACT
GCCTCTCTCAAAACTATTTATGGAGGAAAAGACCAAGTCCTAAAAGATGA
TTTCGAAATGCAGAATTTCGCAAAATTGTTATGTGACAAAACGGAAGGAA
TGAGAGGAGTATGGGGTGATGGCACATTCACCAAATTGGACGATTTATCC
AAAACTCTTTCAACGATGGTTTTCATTTTGAGTAATGTTCATGCAGCAGC
CAATTTCAATCAATATGATGAATATGGCTACCCGCCCAACCTCCCCTTCC
GCCTTGATGGCGCACCACCAACTGATAAGtctCCAGTGACAGAAGACtat
ttggtcaaattatttgacgtcaatgtTACCTTGGCAACAATGGATTTGGG
AAGAACTTTGAGTATGCAAGGAACAAACAAAATTGGCAATTATGAAACTC
GTTATGAATACAAACCTGACGTTTTAAAACATTATCTCAGTTTCATCGAG
GCATTGAAGAAGGTTGGAGCTGACAACGACTCAAAGAACGCTAAACGAAG
TAATCCCTACCCATGGCTCTCACCAAAGGTCGTTCCTAACTCCATCagta
tttagaaaatttattttttaagtgaaacattttgaaactttgcaatAGGC
CAAGCCCGCAAACTTTTACATATGGAATGCGGAACAAAATATAGACACTT
TCGGTACACACATTGGATGGCATAAATTAAGAGCTAATTAGAGC
Run BLAST on NCBI

transcript from alignment at sc0000088:163342..173182+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008831 ID=TCONS_00008831|Name=TCONS_00008831|organism=Clytia hemisphaerica|type=transcript|length=9841bp|location=Sequence derived from alignment at sc0000088:163342..173182+ (Clytia hemisphaerica)
CACTTTTTTATTGCAACATTTAACCTGGTTAAGATGTTTGGTGGAGGACA CAAGAAATTTCGAGTCAAAGTGACGACAGGAAAAGCTAAAGGAGCAGGGA CCAACGCTACCATCAACATCAAATTGATTGATCACGAAGGAAATGTATCT GAATCTCATGTTCTTGATAAATGGCTTCACAATGACTTTGAATATGGAAA GATTGACTCTTACACTATCTATGTTGAAAAAACCTTTGGTaagtaaaact tgaaaaattatttttggtagATTAAAtaaattccatgattttttttagGA GTACAAATTTTGGAGAGGTCGGAAAATCACGAAATTTACGACGTtcactt tcgcgaatttgaggataacatatattttataaactttcgcaaatcgatgg ataaaaatgagaagtTTCAAACGAAAAAGTGAGAATGTACCTCGAACCCA TTAAAAACGGTTGTTCTTTGAATTATAAAGATTTACTGAAGATTTTACAT TTTCGAAGTTTTATAGATTTTCGattcttttgaataactttcgcgagcat aaactttcgtgaATTATCCAgctaagaattttcaaaaacattaactttcg cgaaaaaagccaaaattcgcgaaaattgcgaaagtttctgcttggaAAGT TTAAACGCCTAAAGTGTTTTACCAAGCCCACCATTTTAAGTTATGTATTA AACATTTCGGAAAGGTCAGAGGATTTTGGAATGTTTGGATTGCGGATTTC CGACTGACTACGCTATTGGATTTGCGACAGAGGTCCAGTCCTCGTTTATG ATCAAGAGCAGTCAATCTGATAAATGTTTTGGGCTTTTTTGTGATGTATC AGTCCCCAATCTTTAAGCGCTCTGACGTGATCAAACTTTCACGAAAAAGC GATTGGAAGCGATTCAGGCTACTTTGCATAGACCTTTTGTAGGATGTgag acatgttttttttataagcaatagTGTATGAAACATGGTTAAGATGCTTC CATAAGCGTGTATCGATTGttgcgaggggtaaatcacttgaaaaaaggtg tacgacactttttgactttttgaattttcattgactttttgacttttttt tgactttttttccgACAAAAACGCCCACCGTCTTCGGGCGCCCAACATTT TCCAAAAACGCCAAACGCCTataaattttgctccacccattcgcccattc aagaaactttttgacctattcaagacttttttttgactttttgacttttt tctaagaattttagactttttcttcgactttttgactttttgactatttt ttgactttccgtagaggtgtacgataatttttcgagtgatttacttttga aaaaaaaaacattcgtggaactaattttttgtttttttctataaggTCGA TGCGAACACATCATCTTGCATAGAGACGAGATTGGTTTGAATGACAGCTG GTACGTTGAACACGTGACTGTTGAACATGAAACCGAGGCTGATGCTCATT TTCCATTATCGCGATGGCTACCAGCAAACACAGAAATGCAATTCAAGAAA TTTGACTCACAACTTCCACAAGTcgtgaaaaaagaacatccagAAGTTTA CCAACAACGTCAGAATGAGTTGgatcaaaagaaaaaggacTTTGCTTATG CACCTATTGCTAATAAAGAAAGAATGCCTAGAACAGTGAGCATTTATTAt tcgaaaattgaatattgctGTTTAATGTGCCCGAAAAAATGTTATAATAA TTCaacaacacccctgtgtcacagatctCCTCCTCATTTGAAAATGTGTC CacaatttcgtccccggtggaaaaaatacacCACAATTGACTGTGATTTC ATTCCCACTTGATATTCAATGGAAAAATTACACTAAAAACTATAACAACT ggaattttttgagtttgggACAATAGGATTTCTTTTCCTATTGGGATTTC ATCGATAGCAACTTTCAAAAAGCTCCAGCGGGGCTATGAGACAATGAGAC ATGAGTGTAATTCATCTCTCGTAAAAAGCAAGGATCCGATAacaacaccc cttctcacagacccggtgggaatATCTGGCAGGGGGGGGATTCGTATTCC CATGGTTTTATGGCTCGAGatttcattccattgttttcagcccataaaat tcagtggggatggaaaaatagcacgatattttacagtgaggattgcgcat atttgattattttcatcgAAGACAAAAGTTGGAGTATAATGTTCCACTGG Agacgatatttttgccaatttttccagtgggaaggggtaccagtgggtct gtgagaagggggtgtataagaATCTAATTTACATGCATGAATATTCATGA TTTACTAACTCTATTTCTTTCCACAAAACCCTCTTCAACTTTAAACTTAT TTTATACACTTTTAGGTAACTTCATTGCCACCTGAAGAGACTTTCCATCG TAATTATATCGTAAGATATCACTTCGTTTTTCTTACTTGTACTTTTTATT TAGGCCTGAGATTTCCAAATAGTTTGAGTGTCTACTCCCCATTCAGAATC TATACAAAGTTAGGTAGAGATATTTTGCTTGATGCAAAAACAACTCCCCN TTATCGCTTTGTTTttcctactctcgggtacctaatagccggggggtttg gaataagcgggagggggggttggaataaaaatgtcctgggtggaaaactt ttgaaaaggaggctaatacagcagaattaggacaaaagagggaactttca aaaacattttcccaaaaatcaataagcaggggggttggaataaaaatgtc ctggggggaaaacttttgaaaaggaggctaatacagcagaattaggacaa aagagggaactttcaaaaccattttcccaaaaatcaataagcaggggggt tggaataaaaatgtcctgggtggaaaattttcgaaaaattaattagcggg gggggggacggctattaggtacccgagagtacttgtACTTTAGGCCTGAG ATTTTAAGTAGTTTTGAGTGTCTACTCCCCATTCAGAATCTATACAAAGT TAGGTTAGAGATATTTTGCTTGAAGCAAACAACTCCCGTAAGAAATTAAA ATGACTTTTCATTCATTCATGTATGGGCGGAAAGAGAAAAATGTAACTTT AGCTtacacatattttttataagagcatccaaaactttttaaaccCTCGG ATtttattaactttttgagatctaagcctaaaaatgttctcaacatatTC TTGTTTTCGctatttttagagtatttttgtATCCATTTTGCtaaagaaat cgggtgttttagagtccgcaaagcgtTGAGAcgctcttaacatgttctta acatttggtcattgaagcctcatgttcttatatagtttctcATATAACTT GTATTGTTTCCTATAGTTCGACCTTTTGGAAACGAAATTTACTGGAGTAA TCTCACAATATTTGAAGAAGATGAGATATGAAGATGAGTTTGCATCTTTC GATGACATGTACAAAGTCTATTATGGACCACTTTCACCTTTCACTGTCCC AGCTGTAAGTTCTTGCATCGATCCATTCTTTATTTGTATTTATTAGACCA GCTAAGATCTCACCTTACCATCATCCAAGATTCTTAGACGGTCTTTTTAT GTAAGATCTTGCAATTTCTTGCAAGACCGGGGGGGGGGGNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNGGACCACTTTCACCTTTCACTGTCCCAGCAGTAAGTTCTT GCATCGATCCATTCTTTATTTGTAGTTATTAGACCAGCTAAGATCTCACC TTACCATCATCCAAGATTCTTAGACGGTCTTTTTATGTAAGATCTTGCAA TTTCTTGCAAGAGCCTACGCGAATTTAATATTTTTGCACGACCAAAAGTT ACAGTCCTCCAAAATAGGCTGAAAAAGACCGGGAAAAAAATGGGATAATT ATTGTTTGTTAATAAGTCTCTTCTCGAAAATCAATACGCTTATTTCTCTT CAAGGGTCATTCTGGATGGAGAACAGATGAGAAATTTGCACGATTGAGAT TGACTGGACCTAATTGCACTGTCATCCGTGGTGTCAAGAAAGATGGCGGT CTACCTACAAAGTAagcttcaatttttaaaagtatttgtCTATTTTTGAA ACAGTGCAGGTCACACAATTTATACATGAAATCACCGACTTCCAATCAAA TTAAATCATGAAATTCCATCCTACCCTTCGAATAGACTATCACTGGCTAT GGTCAGGTTTATTAGTGGGGAGCTTTCATAACCTCTGCGACAGTTTTccc tagcctagttaactaagcccgtattcacaaggctagttaggacacacggc ttttggcaatatagcgttttcggcgctttaaagattttttatatttacgg actTTAAGTTTGCCTTGCAATACTatttcagtcacaacttaccattaTAT TTATTctggtgactgaatcaaactagcttagaatTCTAGATTTCTAGGCA AAATTTTCCCATCAATTATAaacagatgaaaaaaaaatcataacttttTA TTATCTAGCTTTCCAGTGGATAAGGACAATCTGGCAAAGCATTTCATGGA GGGACAATCATTCCAACAAGCTCAAGACGCAGACCGTTTATTTTACATCG ATTTCAAAGATTTGGATGGTTACATTGCAAAGTCTTCAGGAAAACCCATG GTTGCTCCTCTTGCGCTATTTTACGCGAGAATGGATGGCACTCTTATTCC TTTGGCTATTCAACTCTTCCAAAAAAATGCTGATAGCAATCCcgtaagat ttcttttgttatcgcttgcgtttttaaaaatcttttcaaaaggGACATAT GTGAATATGTCACGTGTCTTAAAACCGAACAGttttaaattacaaaaatc agAATATATTTGGTCAGTGCCATAGAAATTCTATCATCTTTTgtaaaaag acaaagaaaagctatcaaaagtttgaaaatttttatagcACTAATTTGCT TTGCAAGTAgagaaattttttgtttgacCACATGTCTTTGTCCACCTTGT ATAAAAAACAATCGGAATGTTTTTACATGTGACATGTATGCTCTTTGCAT ACAGTTTGTTGTCACATTTCGTAATTAGTTTTAAAGGTGCTCGATTCATG CAATATGTCTCGAGTGTACTAAATTTTGTATTATTCATTGTGAACAGATC TTCTACCCTCCACCAATCGATGACGAGAAAGTGTGGTGTCACGCCAAATT TTGGTTCGGTGTCGCTGACTCCAACTACCATGAACCAGTCACACATTTGT TGCAAACACATTTAGTAGCTGGAGATTTCATCACTTGTTTTCATCACATG ATTTCACCCTCTCACCCTGTTTACAAATTGATGTTACCTCATTTTATATA CCTTCTTAACATCAACACGTATGTTATAGTTTCTTCTATTAGCTCTATAT GCAGTGATCAACTCTTAACTACGCGGTCGACCTCAGAGGGGGCNCTACCT CATTTTATCTACCTTCTTAACATCAACACGTATGTTATGGTTTCTTCTAT TAGCTCTCTATGCAGTGATCAACTCTTAACTACGCGGTCGACCTCAGAGG GGGCTGGTAATGGATTATTAATCGTTATTTTTGGCAGCCTctaaaacaaa tcaaacaaactcCTGCCGAAACTATTCCATACTAGGAAAGACATTTCCTG AATCTCTGCGGTGGAGCATTTTAACGTTTGAATAGCTTAACTCTTTAATG ACGTTATTTATCGCTTCAATGCAAGGGTATCTTACAATTTTCCTATTTTC GTTATCAGTTTCCTTAAAAGCTTGTAATCATTCCATCTTTCCTCTTTTAG AGATGGTATGCCAGTTTTGACCGCTGAGGATGGCGCTTTCAACAAAATCC TGACCTTCGGACTTGATAATTGTTATGATCTCATGTACAAAaagtaagaa tttttttttaacattctaTTTGTAGAAAAAGATAAGATTCATTTCTCAAT TTAACGATATCAAAAAATTAAGGGGCTACAGCTCCATAAAAACGAGGTCA TGCAAAGTCTAGACTGGATTGGGAACCATAGCTTGTAACCATTGAACCTA AGCCCAAAGTGCTAGAGAGGAACTCCTGGAtggaaaatgaagccacttat ttcccatcctgaACGCGTGACCCGCGGGGTCTAGATTGAAGGTAAAGCAT atcgccagatttcgaaaaatatatcgcgtgaaaacaaagaaagtgctaga ttcaatccatcatTCTGAATGTGGtgcaaatcttaaggcttcacttgtTC TTGCTTGAGCAGGGTTAAAGATTCACCTCTAGCTCCTTCGGGGCTTTTAT CTCAATGCTTAAAACCCACtaatataaattattttatctTCATGACAGAT ACCAAACATTCAAGTTGAGCGATGCATACTTGGCCACTGATTTATCGAAC AGAGGAGTTGAAAACCTTCCCAACTATCATTACATGGAAGATGCAAAGCC CATGTTTAAAGCCATCGAAGATTATATCACTGCCTCTCTCAAAACTATTT ATGGTTAGTATAAACCCTAAAAACTCTTATTCGGTGAAAGGGTAACTCAA GCTCGGCAAGGTTTTCAAATGATCAGAAATTGTCCTTGAGTGGGGTGATA CAGGCTAGTTAGTATACAACTTCAATATTTTAATGTTTGACTGGAAGCTA AACTCTAAAACTGTCACTTCTCAGGGTACCTTAGGCACTCCCGAATGGTC GCATGACGCTTGCACCTTAACctgaatgtttttatgttttttcgaAGTAT TCgatatagaaaataaaatggggcatggtcagatggtcccacttgttgaa aattcgaaaaattttgaaaacctaatttttcagcaaattttcatgatttt gatgacgtcacagaaataagaatttgaataaCTTCTATTAGGAGAAAAGc ttttgacttcaaattttcaccaaaggtgtaaatcaataaaaaaaggatcc acgaaaaaaaattaaaaattctttgctaatgtcaataaaatttgcaaaaa caccgttttggctgaaattgCTAGTCCTTTAGCTAGGgcctttttttgaa attcaaatatatGACAATACAGCTATAAAACTCTAAGGATTTTAAAATCG AgttattgattttttgattcTCGTTCGATTCTTAGGAGGAAAAGACCAAG TCCTAAAAGATGATTTCGAAATGCAGAATTTCGCAAAATTGTTATGTGAC AAAACGGAAGGAATGAGAGGAGTATGGGGTGATGGCACATTCACCAAATT GGACGATTTATCCAAAACTCTTTCAACGATGGTTTTCATTTTGAGTAATG TTCATGCAGCAGCCAATTTCAATCAATATGATGAATATGGCTACCCGCCC AACCTCCCCTTCCGCCTTGATGGCGCACCACCAATTGATAAGGTAATGTT AACCATATCTGCGAAATTAAGGATGATAATATGCTGAAAATTTTAcattt attacgatttcgaggttaagtagatttccaatttttttgagaacTTTTCG CGAGTGTAAacttcaaagacatttactatcgcaaaaatggccgaaattcg cgaaaatcgtgtAAGTTTTTCTGAACATgactcaaaaaatgtcaaatact ttttgaatgaccTTTCTGAGAGTGACTACATTAATCTGTAGATATCGCAG CCGATATCTACAGAAATTTCAAAACTCATTGTCGTAGGGCCAATGTACTA CGCTATTTTTTACGTGGAACATCGTGGAACATCGTGGAATATCTGACACA TAGTACGAAATGACTTATAAATTAGTACCTCTTCTACCAACTGTAGTCCC TGCGTTGCTACTCGCTATTTCCTAGCTGGTGCTTTCTATGTTATATTATT TCTTATACCTAGTTTTAGTCTAATTCTCNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTCACCAAAT TGGACGATTTATCCAAAACCCTTTCAACGATGGTTTTCATTTTGAGTAAT GTTCATGCAGCAGCCAATTTCAATCAATATGATGAATATGGCTATCCGCC CAACCTCCCCTTTCGCCTTGATGGCGCACCACCAACTGATAAGGTAATGT TAaccatattttttatttgtcatCTGCGAAATTAAGGATGATAATATGCC GAAAATTTTAcatttattacgatttcgaggtcaaatagatttccaatttt tttgagaatttttcgtgagtttaaactttcgcgaattaccatgttaagaa ttttcaaagacatttactatCGCAAATATggccgaaattcgcgaaaatcg tgaGTTTTTCAGAACAAGACTCAAAAAATgtgaaatactttttgaatgac cTTTCTGAGAGTGACTCCATTAATCTGTAGATATCGGATGCGATATCTAC AGAAATTTCAAAACTCATTGTCGTAGGGCCAATGTACTACGCTATTTTTT ACGTGGAACATCGTGGAATATCTGACACATAGTACGAAATGACtttccct tttttctttttagtctCCAGTGACAGAAGACtatttggtcaaattatttg acgtcaatgtTACCTTGGCAACAATGGATTTGGGAAGAACTTTGAGTATG CAAGGAACAAACAAAATTGGCAATTATGAAACTCGTTATGAATACAAACC TGACGTTTTAAAACATTATCTCAGGTTAGTTTTTATTCTGTACGGACAAC TTTCGCATTTCAGTTAAGTTCCGTCTTTCAAATTTTAAGCAAGTTCAGCT TTTTTCAGCGATGTTGTCGGCTATTTCGGAAATATTATCGGTACCTTCTG ATGAAATTTCCACGTAATACAGTATATCCAAAAAAACGGAACATAATTCA AATGGTACCTAACATGTTTGTGCGGAACAATGTGTCAGAACTTCATGCTG GAGGCTTTATTTTCTGTACTAAAGTTTGACACGACTCCCCCAATAGAAAG TATTCAAACATTTAAgtctaattttgtttttaaacagTTTCATCGAGGCA TTGAAGAAGGTTGGAGCTGACAACGACTCAAAGAACGCTAAACGAAGTAA TCCCTACCCATGGCTCTCACCAAAGGTCGTTCCTAACTCCATCagtattt agaaaatttattttttaagtgaaacattttgaaactttgcaatAGGCCAA GCCCGCAAACTTTTACATATGGAATGCGGAACAAAATATAGACACTTTCG GTACACACATTGGATGGCATAAATTAAGAGCTAATTAGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004959XLOC_004959Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008831-exon-sc0000088-1491911889:163342..163579TCONS_00008831-exon-sc0000088-1491911889:163342..163579Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1510915933:163342..163579TCONS_00008831-exon-sc0000088-1510915933:163342..163579Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1575043694:163342..163579TCONS_00008831-exon-sc0000088-1575043694:163342..163579Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1491911889:164737..165026TCONS_00008831-exon-sc0000088-1491911889:164737..165026Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1510915933:164737..165026TCONS_00008831-exon-sc0000088-1510915933:164737..165026Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1575043694:164737..165026TCONS_00008831-exon-sc0000088-1575043694:164737..165026Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1491911889:165757..165801TCONS_00008831-exon-sc0000088-1491911889:165757..165801Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1510915933:165757..165801TCONS_00008831-exon-sc0000088-1510915933:165757..165801Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1575043694:165757..165801TCONS_00008831-exon-sc0000088-1575043694:165757..165801Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1491911889:166758..166895TCONS_00008831-exon-sc0000088-1491911889:166758..166895Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1510915933:166758..166895TCONS_00008831-exon-sc0000088-1510915933:166758..166895Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1575043694:166758..166895TCONS_00008831-exon-sc0000088-1575043694:166758..166895Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1491911889:167746..167852TCONS_00008831-exon-sc0000088-1491911889:167746..167852Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1510915933:167746..167852TCONS_00008831-exon-sc0000088-1510915933:167746..167852Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1575043694:167746..167852TCONS_00008831-exon-sc0000088-1575043694:167746..167852Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1491911889:168300..168534TCONS_00008831-exon-sc0000088-1491911889:168300..168534Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1510915933:168300..168534TCONS_00008831-exon-sc0000088-1510915933:168300..168534Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1575043694:168300..168534TCONS_00008831-exon-sc0000088-1575043694:168300..168534Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1491911889:168939..169159TCONS_00008831-exon-sc0000088-1491911889:168939..169159Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1510915933:168939..169159TCONS_00008831-exon-sc0000088-1510915933:168939..169159Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1575043694:168939..169159TCONS_00008831-exon-sc0000088-1575043694:168939..169159Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1491911889:169592..169684TCONS_00008831-exon-sc0000088-1491911889:169592..169684Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1510915933:169592..169684TCONS_00008831-exon-sc0000088-1510915933:169592..169684Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1575043694:169592..169684TCONS_00008831-exon-sc0000088-1575043694:169592..169684Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1491911889:170140..170294TCONS_00008831-exon-sc0000088-1491911889:170140..170294Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1510915933:170140..170294TCONS_00008831-exon-sc0000088-1510915933:170140..170294Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1575043694:170140..170294TCONS_00008831-exon-sc0000088-1575043694:170140..170294Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1491911889:170927..171156TCONS_00008831-exon-sc0000088-1491911889:170927..171156Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1510915933:170927..171156TCONS_00008831-exon-sc0000088-1510915933:170927..171156Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1575043694:170927..171156TCONS_00008831-exon-sc0000088-1575043694:170927..171156Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1491911889:172008..172034TCONS_00008831-exon-sc0000088-1491911889:172008..172034Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1510915933:172008..172034TCONS_00008831-exon-sc0000088-1510915933:172008..172034Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1575043694:172008..172034TCONS_00008831-exon-sc0000088-1575043694:172008..172034Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1491911889:172455..172615TCONS_00008831-exon-sc0000088-1491911889:172455..172615Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1510915933:172455..172615TCONS_00008831-exon-sc0000088-1510915933:172455..172615Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1575043694:172455..172615TCONS_00008831-exon-sc0000088-1575043694:172455..172615Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1491911889:172929..173182TCONS_00008831-exon-sc0000088-1491911889:172929..173182Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1510915933:172929..173182TCONS_00008831-exon-sc0000088-1510915933:172929..173182Clytia hemisphaericaexon
TCONS_00008831-exon-sc0000088-1575043694:172929..173182TCONS_00008831-exon-sc0000088-1575043694:172929..173182Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:163342..173182 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.5915 9.15915 0.871976 0.0185873 7.78823e-09 1.39903e-08 4.68933e-06 0.0298679 6.36596 1.30586 2.00815 1.08786e-05 3.89446 0.999276 40.0651 4.45575 23.9638 31.1957 0 0 5.85589 26.1912 86.3609 67.0244 0.000443009 0.00040263 234.289 297.454 10.8234 38.2453
Blast
BLAST of TCONS_00008831 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.897e-70
Identity = 192/689 (27.87%), Postives = 327/689 (47.46%), Query Frame = 1
Query:   58 FRVKVTTGKAKGAGTNATINIKLIDHEGNVSESHVLDKWLHNDFEYGKIDSYTIYVEKTFGRCEHIILHRDEIGLNDSWYXXXXXXXXXXXADAHFPLSRWLPANTEMQFKKFDSQLPQVVKKEHPEVYQQRQNELDQKKKDFAYA------PIANKERMPRTVTSLPPEETFHRNYIFDLLETKFTGVISQYLKKMR--YEDEFASFDDMYKVYYGPLSPFTVPAGHSGWRTDEKFARLRLTGPNCTVIRGVKKDGGLPTNFPVDKDNLAKHFMEGQSFQQAQDADRLFYIDFKDLDGYIAKSSG----KPMVAPLALFYARMDGTLIPLAIQLFQKNADSNPIFYPPPIDDEKVWCHAKFWFGVADSNYHEPVTHLLQTHLVAGDFITCFHHMISPSHPVYKLMLPHFIYLLNINTDGMPVLTAEDGAFNKILTFGLDNCYDLMYKKYQTFKLSDAYLATDLSNRGV---ENLPNYHYMEDAKPMFKAIEDYITASLKTIYGGKDQVLKDDFEMQNFAKLLCDKTEGMRGVWGDG---TFTKLDDLSKTLSTMVFILSNVHAAANFNQYDEYGYPPNLPFRLDGAPPTDKSPVTEDYLV-KLFDVNVTLATMDLGRTLSMQGTNK--IGNY-ETRYEYKP--DVLKHYLSFIEALKKVGADNDSKNAKRSNPYPWLSPKVVPNSISI 2052
            + V V TG    AGT+  I + L+   G  SE H+LDK  +NDFE G +DSY + V++  G  + + + + +  LND WY++++T++        FP  RW+  + E+  +   ++L +    +   + Q R+ EL+ ++K + +       P++   +  +    LP +  F      D +      + + ++ +    ++  +  F D  K++   +S        + W+ D  F    L G N  +IR   +   LP   PV  + +        S +Q      +F +DF+ LDG  A  +     + + AP+ L Y  +   ++P+AIQL Q   D NPIF P   D +  W  AK W   +D + H+ +THLL+THLV+  F    +  +   HP++KL++ H  + + INT     L  E G F+K    G      ++ +  +    +       +  RG+   E++P Y Y +D   +++AI  + TA +  IY   DQV+++D E+Q+F   +     GMRG    G   +    + LS+ L+ ++F  S  HAA NF QYD   + PN P  +   PPT K  VT + +V  L D   +   +     LS    N+  +G Y E  +  KP  + +  +   +EA+  V A+   +N K+  PY +LSP  +PNS++I
Sbjct:    4 YTVTVATGSQWFAGTDDYIYLSLVGSAG-CSEKHLLDKPFYNDFERGAVDSYDVTVDEELGEIQLVRIEKRKYWLNDDWYLKYITLKTPHGDYIEFPCYRWITGDVEVVLRDGRAKLAR--DDQIHILKQHRRKELETRQKQYRWMEWNPGFPLSIDAKCHK---DLPRDIQFDSEKGVDFVLNYSKAMENLFINRFMHMFQSSWNDFADFEKIFVK-ISNTISERVMNHWQEDLMFGYQFLNGCNPVLIRRCTE---LPEKLPVTTEMVECSLERQLSLEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPS--DAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTF-TAEVVDIYYEGDQVVEEDPELQDFVNDV--YVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMARFRKNLEAIVSVIAE---RNKKKQLPYYYLSPDRIPNSVAI 674          
The following BLAST results are available for this feature:
BLAST of TCONS_00008831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LOX51.897e-7027.87Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO... [more]
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