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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008824 ID=TCONS_00008824|Name=TCONS_00008824|organism=Clytia hemisphaerica|type=transcript|length=1664bp
AGGTTCTCGCTGTCCAGATAACGATTTACTAGCACGTGACAATTTCCATG
GCTTCTATGAAAATAAAACAGCGGATTACCAATTCCTTTTATGTCCCGAA
AGATACTGTTGTTCATCAACTACAAAACATTGCAAATCTCCAACAACTTG
CAATTTACATCGAGAAGGAAGACTTTGTGGCAAATGTGAAGAAGGTTATT
TCATCAGTTTCTTCAATAATAAATGTATCAACATTTCTGAATGTACCAAT
GGAAGACAACATTTCTGGAcgctatttttcatttctttcatcgCTTTGGC
TGTGCTGTTAACATTTCTTAAAGATATCATCACTGCTATCAAATGTGCTG
GGCTGGTCATAATGGCATGTTTAAGGAAAACTTGCACAAAGAAAAGAGAA
GAAGATGCCAACGAGATCGATGAAATGGAAGAACTACAAGCAGGAAACAA
CCAAAGAAAACGTAAAGAGATTTCCACTTCATCAATCTTCAATATTTTGG
TCtctttttttcagttaaaaGCTTTGATGACAGTTCAGAGCAATGAGAAA
ACATTAATCGATAAACTTATGAACATGGATATTATGGTTAAAAGCAGTGA
AGCTTTTGAAGCACTTTGTCCTTTCAGGGGGTTTAATGTTGTATGGCGAG
AGGTTTTAAACGGATATACGATCCCATTTTTATTGTTAATGACTATTGCA
GCTTTACACTTGATTGTAAAACTCTTGAAACACTTTCGACCATCAAGTTT
AAGATTAACATGGTTGATGACGAGATTTTGTGTTGGGTATTATATCATCA
TCGCTTTTTGCTACAAGAATATCTGCCGAACAGTCTTTCAGCTTTTGAAC
TGCAAAACAATGAATGAAGTAACATTCTTATACATTGACGGTACTGttga
atgtttttctttgtgGCAGGTGGCAAATATGTTATTCTTGGTATGTTGGG
TTGTTCCTTTCCCATTTGCAGTCGTTTTGGGCTACTAcctctttaaaaac
aaaaagatttctgTGACGACGTTTCTCATATTTTTAATGTTCCCAATGTT
TTGTATTGTGAGAACTTGTTTCTCAAGATGGAAAAGAACTGGCGAGACTG
ACAGGAGTGATTTCATTGGAAACAGATTCACAGAAATATTCGAAGAACCC
TACAGAGACAAATTCTTTTGGTGGGAATCTTGGCGACTTATCGAACGTTT
TATTGTTTCTGGCATAGCAGTATTTCTGACGAACCCTATCTATCGCATCT
TATANAATATTTGAAGAGCCCTACAGAGACAAATTCTTTTGGTGGGAATC
TTGGCGACTTATCGAACGTTTTATTGTTTCTGGCATAGCAGTATTTATGA
CGAACCCGATCTATCGCATCTTATACCTGACCCCCGTCTTTGTTTCCTTA
ACGTATTTCCACTTCCGAATGAATCCATATAAACGTTCGATGTATATTCT
AAAACGATTAGATACGGTTTCCTGGTTTTGTTTATTCATTCATTTGTTCA
TCAACGGAATGCGAGCTGTTGTTTACATTTATGATGTACCTGATATCGAT
TTTATAAGCCATGCATTAGAAGCTGCTAATATATTGGAGGACTTATTTTC
TCCACTCTGGTATCTTATTATTTCATTCATTCTTAAGAAGTTgtgtgaaa
tatttttagatttt Run BLAST on NCBI protein sequence of TCONS_00008824-protein >TCONS_00008824-protein ID=TCONS_00008824-protein|Name=TCONS_00008824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=420bp
GSRCPDNDLLARDNFHGFYENKTADYQFLLCPERYCCSSTTKHCKSPTTC
NLHREGRLCGKCEEGYFISFFNNKCINISECTNGRQHFWTLFFISFIALA
VLLTFLKDIITAIKCAGLVIMACLRKTCTKKREEDANEIDEMEELQAGNN
QRKRKEISTSSIFNILVSFFQLKALMTVQSNEKTLIDKLMNMDIMVKSSE
AFEALCPFRGFNVVWREVLNGYTIPFLLLMTIAALHLIVKLLKHFRPSSL
RLTWLMTRFCVGYYIIIAFCYKNICRTVFQLLNCKTMNEVTFLYIDGTVE
CFSLWQVANMLFLVCWVVPFPFAVVLGYYLFKNKKISVTTFLIFLMFPMF
CIVRTCFSRWKRTGETDRSDFIGNRFTEIFEEPYRDKFFWWESWRLIERF
IVSGIAVFLTNPIYRILXNI Run BLAST on NCBI transcript from alignment at sc0000088:108497..112239+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008824 ID=TCONS_00008824|Name=TCONS_00008824|organism=Clytia hemisphaerica|type=transcript|length=3743bp|location=Sequence derived from alignment at sc0000088:108497..112239+ (Clytia hemisphaerica)
AGGTTCTCGCTGTCCAGATAACGATTTACTAGCACGTGACAATTTCCATG
GCTTCTATGAAAATAAAACAGCGGATTACCAATTCCTTTTATGTCCCGAA
AGATACTGTTGTTCATCAACTACAAAACATTGCAAATCTCCAACAACTTG
CAATTTACATCGAGAAGGAAGACTTTGTGGCAAATGTGAAGAAGGTTATT
TCATCAGTTTCTTCAATAATAAATGTATCAACATTTCTGAATGTACCAAT
GGAAGACAACATTTCTGGAcgctatttttcatttctttcatcgCTTTGGC
TGTGCTGTTAACATTTCTTAAAGATATCATCACTGCTATCAAATGTGCTG
GGCTGGTCATAATGGCATGTTTAAGGTAAAACAGGATTAAATATTTGCGT
TCAGTAGAGTTCAAAGGACACGTTAAtcacaagtttgtaatattcacgca
aatttgtaatatttGCGGAGTTTTGTGAATTTCCAGCTGCACAGTTTTGC
GATCAAGAGTTTGCAcacttttaagattttaaaaagtttagTTTTATTCT
TTACCTTGAGGGATAAGATGAGagcagaaaacaatcaaattaaattttta
gcaGTGCGAATATACATAGCTGAAAATAATAGTTTATCAGCTCACTGACG
TAACGATAGAGAGAGACCTCCTTTTTCGTGGATCCGAGCTTTAAGTATTA
AAATAAGATATTATCACTCCCGATAATAttaagaatttcgaaaaattaag
cCAGCTCTTTGCAAAGTATACTTGTTTTGTAACGAATGAGCATTAGACTT
GTACAGAATTATGTAAGAATAAAGAGTTCCAAGTcagcattttgattttt
ggttcaaataatatttttaattgGATAATTCGGGTAAATTTCGGATTAAC
TATATTGCGAGCTACTTGATAGGATCATTTCTAGTTATTAAAAAAGGCTA
ATGAATAACGTTGTTCATAAAGAAGCATCAAAATCTAGTAGtgtttttgc
ttggaaaagttCGGAACAGCTGGCCTTAATTCAGCTTGTTTGTAGTCTTA
TGAACTTGAAAGATAAATCACACTATAAGAGGTCAAATTAAACTATTCTT
GTTATATACACTTATACACTTATcacatttccagaaaaattaaattttat
acCGGCTGCACCACAGAAAAACGTTTTTCACTACAAACAAGgtgaataaa
aattttgaatatatgattttttggtgtttttcagcctTTCTGATAGATTA
CCTTTCTGAGTGATTTTAGGCCAGAAAATGagtattttagaaaaacataa
tttttgcaagttttctttaaattagcttttctcgagttctatggtTTTTA
ACAAACTGAATCCTTCTCTAATggaaagaaaaacttcaacttGAATTAGT
CATTTATTAAACTTGGTCCTTTTCCCGTCTGTTCGAGGtatttataatat
attttatacACAAGCATATAAAAAATTTGGTTCATTTAAGTAAGTCCTTC
CTCTTTTGAGCGCATTAGAGTTTACTCTTCAAGTGTTCGAAAATGAGGTC
AAACTtctttgtggcacacccggtattcGACAAAAAGTGctttaattatt
taaaaaaattgcaaaagtacACAAGGGCGCAAGGATTCAATTACTAAAGT
ACGAATAAGAGAATTACATATTCTATCTTAATACATATATTTCATAGCGA
TATATTgcttagacgatgttatcgttcgttacagtgatagtaaagtcAGG
AGAATATTATAcattatggcggtatacggaaaaaaatcggtgggagagtt
tcgaagaaagatTGGCAAACTTtaccggctgtaaactcttttcgcctttt
ttcgaattttcttcggtTTTTTAAATAGTGACTTGTCATAGATTATAATA
TAGTCTATTGTCATAGATTATAATATAGTCTATATATTGCCTTGACGACc
atgacctctatgaaacataAGTATGcgctaaaaattacaaaactgcgtaG
AAATTACAAAAGTCGCACATAGCAGTACCCCTAAAccacaatcatggaca
aaaggttcgtagacttctgcaatatttgcaaaatacttcaatatcgatca
aaaacaagttcccaagaggttctgggtgctttccgAACCCATCCAAAGCT
GCTCAAGTCtatcaaagtcacccactgcagtctaaagGGCTTGaataact
ggcttacaccagcatcaaaacgctgattttttgcttgtggttctcTCAAa
ggcaattcaaaagcaatgcaacgacttcaaaagtgtttttcttaacttcc
ctcccctttcagacacattgaagagtcattttacactgtttctcatcatt
tttttactgaaatttcatttgtctacaacattttgtccatgattgcaaAA
GCACAATTTCATTCGTGGGACAAAAGTTCTCTAAATATGTGAATTCCATT
TTAGGAAAACTTGCACAAAGAAAAGAGAAGAAGATGCCAACGAGATCGAT
GAAATGGAAGAACTACAAGCAGGAAACAACCAAAGAAAACGTAAAGAGAT
TTCCACTTCATCAATCTTCAATATTTTGGTCtctttttttcagttaaaaG
CTTTGATGACAGTTCAGAGCAATGAGAAAACATTAATCGATAAACTTATG
AACATGGATATTATGGTTAAAAGCAGTGAAGCTTTTGAAGCACTTTGTCC
TTTCAGGGGGTTTAATGTTGTATGGCGAGAGGTTTTAAACGGATATACGA
TCCCATTTTTATTGTTAATGACTATTGCAGCTTTACACTTGATTGTAAAA
CTCTTGAAACACTTTCGACCATCAAGTTTAAGATTAACATGGTTGATGAC
GAGATTTTGTGTTGGGTATTATATCATCATCGCTTTTTGCTACAAGAATA
TCTGCCGAACAGTCTTTCAGCTTTTGAACTGCAAAACAATGAATGAAGTA
ACATTCTTATACATTGACGGTACTGttgaatgtttttctttgtgGCAGGT
GGCAAATATGTTATTCTTGGTATGTTGGGTTGTTCCTTTCCCATTTGCAG
TCGTTTTGGGCTACTAcctctttaaaaacaaaaagatttctgTGACGACG
TTTCTCATATTTTTAATGTTCCCAATGTTTTGTATTGTGAGAACTTGTTT
CTCAAGATGGAAAAGAACTGGCGAGACTGACAGGAGTGATTTCATTGGAA
ACAGATTCACAGAAATATTCGAAGAACCCTACAGAGACAAATTCTTTTGG
TGGGAATCTTGGCGACTTATCGAACGTTTTATTGTTTCTGGCATAGCAGT
ATTTCTGACGAACCCTATCTATCGCATCTTATANAATATTTGAAGAGCCC
TACAGAGACAAATTCTTTTGGTGGGAATCTTGGCGACTTATCGAACGTTT
TATTGTTTCTGGCATAGCAGTATTTATGACGAACCCGATCTATCGCATCT
TATACCTGACCCCCGTCTTTGTTTCCTTAACGTATTTCCACTTCCGAATG
AATCCATATAAACGTTCGATGTATATTCTAAAACGATTAGATACGGTTTC
CTGGTTTTGTTTATTCATTCATTTGTTCATCAACGGAATGCGAGCTGTTG
TTTACATTTATGATGTACCTGATATCGATTTTATAAGCCATGCATTAGAA
GCTGCTAATATATTGGAGGACTTATTTTCTCCACTCTGGTATCTTATTAT
TTCATTCATTCTTAAGAAGTTgtgtgaaatatttttagatttt Coding sequence (CDS) from alignment at sc0000088:108497..112239+ >TCONS_00008824 ID=TCONS_00008824|Name=TCONS_00008824|organism=Clytia hemisphaerica|type=CDS|length=2526bp|location=Sequence derived from alignment at sc0000088:108497..112239+ (Clytia hemisphaerica)
GGTTCTCGCTGTCCAGATAACGATTTACTAGCACGTGACAATTTCCATGG
CTTCTATGAAAATAAAACAGCGGATTACCAATTCCTTTTATGTCCCGAAA
GATACTGTTGTTCATCAACTACAAAACATTGCAAATCTCCAACAACTTGC
AATTTACATCGAGAAGGAAGACTTTGTGGCAAATGTGAAGAAGGTTATTT
CATCAGTTTCTTCAATAATAAATGTATCAACATTTCTGAATGTACCAATG
GAAGACAACATTTCTGGAcgctatttttcatttctttcatcgCTTTGGCT
GTGCTGTTAACATTTCTTAAAGATATCATCACTGCTATCAAATGTGCTGG
GCTGGTCATAATGGCATGTTTAAGGAAAACTTGCACAAAGAAAAGAGAAG
AAGATGCCAACGAGATCGATGAAATGGAAGAACTACAAGCAGGAAACAAC
CAAAGAAAACGTAAAGAGATTTCCACTTCATCAATCTTCAATATTTTGGT
CtctttttttcagttaaaaGCTTTGATGACAGTTCAGAGCAATGAGAAAA
CATTAATCGATAAACTTATGAACATGGATATTATGGTTAAAAGCAGTGAA
GCTTTTGAAGCACTTTGTCCTTTCAGGGGGTTTAATGTTGTATGGCGAGA
GGTTTTAAACGGATATACGATCCCATTTTTATTGTTAATGACTATTGCAG
CTTTACACTTGATTGTAAAACTCTTGAAACACTTTCGACCATCAAGTTTA
AGATTAACATGGTTGATGACGAGATTTTGTGTTGGGTATTATATCATCAT
CGCTTTTTGCTACAAGAATATCTGCCGAACAGTCTTTCAGCTTTTGAACT
GCAAAACAATGAATGAAGTAACATTCTTATACATTGACGGTACTGttgaa
tgtttttctttgtgGCAGGTGGCAAATATGTTATTCTTGGTATGTTGGGT
TGTTCCTTTCCCATTTGCAGTCGTTTTGGGCTACTAcctctttaaaaaca
aaaagatttctgTGACGACGTTTCTCATATTTTTAATGTTCCCAATGTTT
TGTATTGTGAGAACTTGTTTCTCAAGATGGAAAAGAACTGGCGAGACTGA
CAGGAGTGATTTCATTGGAAACAGATTCACAGAAATATTCGAAGAACCCT
ACAGAGACAAATTCTTTTGGTGGGAATCTTGGCGACTTATCGAACGTTTT
ATTGTTTCTGGCATAGCAGTATTTCTGACGAACCCTATCTATCGCATCTT
ATANAATATTTGAGGTTCTCGCTGTCCAGATAACGATTTACTAGCACGTG
ACAATTTCCATGGCTTCTATGAAAATAAAACAGCGGATTACCAATTCCTT
TTATGTCCCGAAAGATACTGTTGTTCATCAACTACAAAACATTGCAAATC
TCCAACAACTTGCAATTTACATCGAGAAGGAAGACTTTGTGGCAAATGTG
AAGAAGGTTATTTCATCAGTTTCTTCAATAATAAATGTATCAACATTTCT
GAATGTACCAATGGAAGACAACATTTCTGGAcgctatttttcatttcttt
catcgCTTTGGCTGTGCTGTTAACATTTCTTAAAGATATCATCACTGCTA
TCAAATGTGCTGGGCTGGTCATAATGGCATGTTTAAGGAAAACTTGCACA
AAGAAAAGAGAAGAAGATGCCAACGAGATCGATGAAATGGAAGAACTACA
AGCAGGAAACAACCAAAGAAAACGTAAAGAGATTTCCACTTCATCAATCT
TCAATATTTTGGTCtctttttttcagttaaaaGCTTTGATGACAGTTCAG
AGCAATGAGAAAACATTAATCGATAAACTTATGAACATGGATATTATGGT
TAAAAGCAGTGAAGCTTTTGAAGCACTTTGTCCTTTCAGGGGGTTTAATG
TTGTATGGCGAGAGGTTTTAAACGGATATACGATCCCATTTTTATTGTTA
ATGACTATTGCAGCTTTACACTTGATTGTAAAACTCTTGAAACACTTTCG
ACCATCAAGTTTAAGATTAACATGGTTGATGACGAGATTTTGTGTTGGGT
ATTATATCATCATCGCTTTTTGCTACAAGAATATCTGCCGAACAGTCTTT
CAGCTTTTGAACTGCAAAACAATGAATGAAGTAACATTCTTATACATTGA
CGGTACTGttgaatgtttttctttgtgGCAGGTGGCAAATATGTTATTCT
TGGTATGTTGGGTTGTTCCTTTCCCATTTGCAGTCGTTTTGGGCTACTAc
ctctttaaaaacaaaaagatttctgTGACGACGTTTCTCATATTTTTAAT
GTTCCCAATGTTTTGTATTGTGAGAACTTGTTTCTCAAGATGGAAAAGAA
CTGGCGAGACTGACAGGAGTGATTTCATTGGAAACAGATTCACAGAAATA
TTCGAAGAACCCTACAGAGACAAATTCTTTTGGTGGGAATCTTGGCGACT
TATCGAACGTTTTATTGTTTCTGGCATAGCAGTATTTCTGACGAACCCTA
TCTATCGCATCTTATANAATATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008824-exon-sc0000088-1491911889:108497..108871 | TCONS_00008824-exon-sc0000088-1491911889:108497..108871 | Clytia hemisphaerica | exon |
| TCONS_00008824-exon-sc0000088-1510915933:108497..108871 | TCONS_00008824-exon-sc0000088-1510915933:108497..108871 | Clytia hemisphaerica | exon |
| TCONS_00008824-exon-sc0000088-1575043694:108497..108871 | TCONS_00008824-exon-sc0000088-1575043694:108497..108871 | Clytia hemisphaerica | exon |
| TCONS_00008824-exon-sc0000088-1491911889:110951..112239 | TCONS_00008824-exon-sc0000088-1491911889:110951..112239 | Clytia hemisphaerica | exon |
| TCONS_00008824-exon-sc0000088-1510915933:110951..112239 | TCONS_00008824-exon-sc0000088-1510915933:110951..112239 | Clytia hemisphaerica | exon |
| TCONS_00008824-exon-sc0000088-1575043694:110951..112239 | TCONS_00008824-exon-sc0000088-1575043694:110951..112239 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000088 | supercontig | sc0000088:108497..112239 + |
Blast
The following BLAST results are available for this feature:
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