TCONS_00008822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008822
Unique NameTCONS_00008822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008822 ID=TCONS_00008822|Name=TCONS_00008822|organism=Clytia hemisphaerica|type=transcript|length=1294bp
AAAAGAGGAAGcataaaaatggtcaaaagagACTGGATCACATAGTTTAT
CCACTTACGAATAAGGGAGTGGTTAATTGTGCAAATTACATCTGAACTTT
CTGATGTAGTATAAATAAGGGTAAGGACTCACTGAGAAGTCATGCAAAGC
CAAAGAAGCCACTGACTTGACTGACAAGACAAGAGACACATAAAAACAca
cacaaaacaaaatgaaggGATTAACAACACTCATTTGCATCGCTGTAGTA
GCAGTTCACAGTGCACGTGGGGCGGTCATCAGCAACGACTTAAACTGCAA
GAACACGGACGATAATTGTGATAGTCGGGCCAAAGGAGGTGAATGCCATG
AAAACCCAGTCTACATGATTGTCAGCTGTGCTCCCGCCTGTGACGTCTGC
TTTCACGGTGATAAAGATTGGTCATGCAGTTATAAGGCAAGACGTGGAGA
TTGCATCAAATATCCTTCATTAATGAGTACGCAGTGTCCATCAAGCTGCA
GTGCTCAAGGACAAGAAGGTAAACGTTTGGCAGGATGTTTAAATGCGTGC
AGTGAATTCGCATGCGCATCAGATACAAGCCTTCAAAAAGGATGTAATCA
AATGTTTTCGTGTACGCATGCGTGTAAAATGCGACAACTTGGAGTCACTG
TCGGTAGCTGCCGAACGAAATGTGAGCGCAACGGGCAATCTGGCTGCTTT
CCGAACGTCAATGGGTACACATTCAATTTATGCGTCGATTGCTCAAGAGA
AGGTTGCCCAACCTATCCAACCGTTGACGAATGTAAAATTGGTTGTGACT
ACTTTTAAAGTGGACAATAAAATCCAAAGATTGGATATTATCAAGgttca
cattttttttttcagttcttAAAAACgggttattttttatttagacaatt
aaattcttttatttaagaTTACATAAAACTTGAGGGATGATCTGAGGGTA
ATTTGAGATCCTTTGCCTACTGAAATCTCTGTCTAGCTAGACACCTTGCT
ATTTcttcaaataaattttacctTTACTATCTAAACTTAAGAAATAGTTT
TTTGAGGTTTCGCCCAGGACAAAAAACTTTGGACTTTCATGCCGAAGATC
TTTACTTAAGCCATCAGATTATCATTTTGACTACTATATAATTCTTGTAT
AACATttatattttaataattttcaataattttcactGCTTCAACTGTCA
TAATTCTTgtacaaaaactttaaaaagaagcTTTATTCTTCTTATATCTC
TTATTTTCtatgtaaagaaaaaactttttcaaaacttaattgtg
Run BLAST on NCBI

protein sequence of TCONS_00008822-protein

>TCONS_00008822-protein ID=TCONS_00008822-protein|Name=TCONS_00008822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MKGLTTLICIAVVAVHSARGAVISNDLNCKNTDDNCDSRAKGGECHENPV
YMIVSCAPACDVCFHGDKDWSCSYKARRGDCIKYPSLMSTQCPSSCSAQG
QEGKRLAGCLNACSEFACASDTSLQKGCNQMFSCTHACKMRQLGVTVGSC
RTKCERNGQSGCFPNVNGYTFNLCVDCSREGCPTYPTVDECKIGCDYF
Run BLAST on NCBI

transcript from alignment at sc0000088:69130..71696+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008822 ID=TCONS_00008822|Name=TCONS_00008822|organism=Clytia hemisphaerica|type=transcript|length=2567bp|location=Sequence derived from alignment at sc0000088:69130..71696+ (Clytia hemisphaerica)
AAAAGAGGAAGcataaaaatggtcaaaagagACTGGATCACATAGTTTAT
CCACTTACGAATAAGGGAGTGGTTAATTGTGCAAATTACATCTGAACTTT
CTGATGTAGTATAAATAAGGGTAAGGACTCACTGAGAAGTCATGCAAAGC
CAAAGAAGCCACTGACTTGACTGACAAGACAAGAGACACATAAAAACAca
cacaaaacaaaatgaaggGATTAACAACACTCATTTGCATCGCTGTAGTA
GCAGGTAAGATTTAACTTTTTCTCGACATTTAAATACAAAAGATTGTCCA
AACTTTAAACCCGTGCCTCAATTTGGGNTTTTTTTCGACATTTAAATACA
AAAGATTGTCCAAACTTTAAACCCGTGCCTCAATTTGGGGTGATGAGCAT
TTCTTCggtgtaaaaaaaaaactttcgttTCAGAGGCAAAAATTAAGTTA
AGTTTTAAgcgtaacaaaataaaaatcacaTTTGAGTCCCACTGGGaagg
aaagttttttattttgaatcttgACATTTTGTTTACAGTTCACAGTGCAC
GTGGGGCGGTCATCAGCAACGACTTAAACTGCAAGAACACGGACGATAAT
TGTGATAGTCGGGCCAAAGGAGGTGAATGCCATGAAAACCCAGTCTACAT
GATTGTCAGCTGTGCTCCCGCCTGTGACGTCTGTAAGTACATACACATAA
TTTTCCtttctccttaactcgaacacgtTTTCTTGTTCCGTCAGTTAACC
TTATAAATCTTACTTCATAATTACATAATACACTCAATAATTTCCttaaa
tcaaataaatttctGTTTTCCGCCCGTGTTCGAGACTCGACTGCATAAGG
AGCGTTCCCACAaagtattacacttttaagtcaagAAGACTTGCTTGATA
TCAGTTGATTTAAGCTAGGTTTGTTACAGTAGGTACCCTTAAAAATCACG
TGATGAATatgaaaagaagaaattcttttGCCCTGGAAAGCTTTATTTGT
TTGTTATAAACAATGGATCAACTTTTAGAGAGACTCTATCTTTTGCATTA
GCTTGGAAATTATCGGCGTTAAAATCCGACTTCTATAaatccttttcttt
ttctgGCAGGCTTTCACGGTGATAAAGATTGGTCATGCAGTTATAAGGCA
AGACGTGGAGATTGCATCAAATATCCTTCATTAATGAGTACGCAGTGTCC
ATCAAGCTGCAGTGCTCAAGGACAAGAAGGTAAGGCTACGTTCATCTTAT
CCTCCCGTgtgcctaataaacgccccACGCTTGATagttttttgatttct
tccACACCCCGGACCTTTTAAGGACCCCCTTTCACgtttatttatatttt
cagctatcaaaagaaagtcccttattttgctctaaatagctaAATTTTAG
TCTATAATTACCTTCGCGTCCCCTCGcgtttatcaaaatttgaaaatatt
ttcagctgtcaaaagaaGAGTCTCTTATTTGGTTTTAAATAGCTAGGTCT
ATAATTACCTTACTTTGAAAGTATTTAAAGGCGCAATTTACTGCATTAAA
ACTCAAATGAAGATCTATTTTTGAGGTTTAAACTATCACCAAACGATAAT
TCCCGATATCTGGGTTAACCCGAgcctattattattatttgtgTAAACTG
TATTTTACCTTTTTGATTCTTTGATTAATAGAACTGATTAAAATTCGATT
GCTTAAATGAATAATAAGATGCCGTTGATTGGTGCAAGATCCATTTGCAT
CTCATTCGAACCATTACATAATGTTTGCATTTCACTTGTAGGTAAACGTT
TGGCAGGATGTTTAAATGCGTGCAGTGAATTCGCATGCGCATCAGATACA
AGCCTTCAAAAAGGATGTAATCAAATGTTTTCGTGTACGCATGCGTGTAA
AATGCGACAACTTGGAGTCACTGTCGGTAGCTGCCGAACGAAATGTGAGC
GCAACGGGCAATCTGGCTGCTTTCCGAACGTCAATGGGTACACATTCAAT
TTATGCGTCGATTGCTCAAGAGAAGGTTGCCCAACCTATCCAACCGTTGA
CGAATGTAAAATTGGTTGTGACTACTTTTAAAGTGGACAATAAAATCCAA
AGATTGGATATTATCAAGgttcacattttttttttcagttcttAAAAACg
ggttattttttatttagacaattaaattcttttatttaagaTTACATAAA
ACTTGAGGGATGATCTGAGGGTAATTTGAGATCCTTTGCCTACTGAAATC
TCTGTCTAGCTAGACACCTTGCTATTTcttcaaataaattttacctTTAC
TATCTAAACTTAAGAAATAGTTTTTTGAGGTTTCGCCCAGGACAAAAAAC
TTTGGACTTTCATGCCGAAGATCTTTACTTAAGCCATCAGATTATCATTT
TGACTACTATATAATTCTTGTATAACATttatattttaataattttcaat
aattttcactGCTTCAACTGTCATAATTCTTgtacaaaaactttaaaaag
aagcTTTATTCTTCTTATATCTCTTATTTTCtatgtaaagaaaaaacttt
ttcaaaacttaattgtg

Coding sequence (CDS) from alignment at sc0000088:69130..71696+

>TCONS_00008822 ID=TCONS_00008822|Name=TCONS_00008822|organism=Clytia hemisphaerica|type=CDS|length=2388bp|location=Sequence derived from alignment at sc0000088:69130..71696+ (Clytia hemisphaerica)
atgaaggGATTAACAACACTCATTTGCATCGCTGTAGTAGCAGTTCACAG
TGCACGTGGGGCGGTCATCAGCAACGACTTAAACTGCAAGAACACGGACG
ATAATTGTGATAGTCGGGCCAAAGGAGGTGAATGCCATGAAAACCCAGTC
TACATGATTGTCAGCTGTGCTCCCGCCTGTGACGTCTGCTTTCACGGTGA
TAAAGATTGGTCATGCAGTTATAAGGCAAGACGTGGAGATTGCATCAAAT
ATCCTTCATTAATGAGTACGCAGTGTCCATCAAGCTGCAGTGCTCAAGGA
CAAGAAGGTAAACGTTTGGCAGGATGTTTAAATGCGTGCAGTGAATTCGC
ATGCGCATCAGATACAAGCCTTCAAAAAGGATGTAATCAAATGTTTTCGT
GTACGCATGCGTGTAAAATGCGACAACTTGGAGTCACTGTCGGTAGCTGC
CGAACGAAATGTGAGCGCAACGGGCAATCTGGCTGCTTTCCGAACGTCAA
TGGGTACACATTCAATTTATGCGTCGATTGCTCAAGAGAAGGTTGCCCAA
CCTATCCAACCGTTGACGAATGTAAAATTGGTTGTGACTACTTTTAAatg
aaggGATTAACAACACTCATTTGCATCGCTGTAGTAGCAGTTCACAGTGC
ACGTGGGGCGGTCATCAGCAACGACTTAAACTGCAAGAACACGGACGATA
ATTGTGATAGTCGGGCCAAAGGAGGTGAATGCCATGAAAACCCAGTCTAC
ATGATTGTCAGCTGTGCTCCCGCCTGTGACGTCTGCTTTCACGGTGATAA
AGATTGGTCATGCAGTTATAAGGCAAGACGTGGAGATTGCATCAAATATC
CTTCATTAATGAGTACGCAGTGTCCATCAAGCTGCAGTGCTCAAGGACAA
GAAGGTAAACGTTTGGCAGGATGTTTAAATGCGTGCAGTGAATTCGCATG
CGCATCAGATACAAGCCTTCAAAAAGGATGTAATCAAATGTTTTCGTGTA
CGCATGCGTGTAAAATGCGACAACTTGGAGTCACTGTCGGTAGCTGCCGA
ACGAAATGTGAGCGCAACGGGCAATCTGGCTGCTTTCCGAACGTCAATGG
GTACACATTCAATTTATGCGTCGATTGCTCAAGAGAAGGTTGCCCAACCT
ATCCAACCGTTGACGAATGTAAAATTGGTTGTGACTACTTTTAAatgaag
gGATTAACAACACTCATTTGCATCGCTGTAGTAGCAGTTCACAGTGCACG
TGGGGCGGTCATCAGCAACGACTTAAACTGCAAGAACACGGACGATAATT
GTGATAGTCGGGCCAAAGGAGGTGAATGCCATGAAAACCCAGTCTACATG
ATTGTCAGCTGTGCTCCCGCCTGTGACGTCTGCTTTCACGGTGATAAAGA
TTGGTCATGCAGTTATAAGGCAAGACGTGGAGATTGCATCAAATATCCTT
CATTAATGAGTACGCAGTGTCCATCAAGCTGCAGTGCTCAAGGACAAGAA
GGTAAACGTTTGGCAGGATGTTTAAATGCGTGCAGTGAATTCGCATGCGC
ATCAGATACAAGCCTTCAAAAAGGATGTAATCAAATGTTTTCGTGTACGC
ATGCGTGTAAAATGCGACAACTTGGAGTCACTGTCGGTAGCTGCCGAACG
AAATGTGAGCGCAACGGGCAATCTGGCTGCTTTCCGAACGTCAATGGGTA
CACATTCAATTTATGCGTCGATTGCTCAAGAGAAGGTTGCCCAACCTATC
CAACCGTTGACGAATGTAAAATTGGTTGTGACTACTTTTAAatgaaggGA
TTAACAACACTCATTTGCATCGCTGTAGTAGCAGTTCACAGTGCACGTGG
GGCGGTCATCAGCAACGACTTAAACTGCAAGAACACGGACGATAATTGTG
ATAGTCGGGCCAAAGGAGGTGAATGCCATGAAAACCCAGTCTACATGATT
GTCAGCTGTGCTCCCGCCTGTGACGTCTGCTTTCACGGTGATAAAGATTG
GTCATGCAGTTATAAGGCAAGACGTGGAGATTGCATCAAATATCCTTCAT
TAATGAGTACGCAGTGTCCATCAAGCTGCAGTGCTCAAGGACAAGAAGGT
AAACGTTTGGCAGGATGTTTAAATGCGTGCAGTGAATTCGCATGCGCATC
AGATACAAGCCTTCAAAAAGGATGTAATCAAATGTTTTCGTGTACGCATG
CGTGTAAAATGCGACAACTTGGAGTCACTGTCGGTAGCTGCCGAACGAAA
TGTGAGCGCAACGGGCAATCTGGCTGCTTTCCGAACGTCAATGGGTACAC
ATTCAATTTATGCGTCGATTGCTCAAGAGAAGGTTGCCCAACCTATCCAA
CCGTTGACGAATGTAAAATTGGTTGTGACTACTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004957XLOC_004957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008822-exon-sc0000088-1491911889:69130..69383TCONS_00008822-exon-sc0000088-1491911889:69130..69383Clytia hemisphaericaexon
TCONS_00008822-exon-sc0000088-1510915933:69130..69383TCONS_00008822-exon-sc0000088-1510915933:69130..69383Clytia hemisphaericaexon
TCONS_00008822-exon-sc0000088-1575043694:69130..69383TCONS_00008822-exon-sc0000088-1575043694:69130..69383Clytia hemisphaericaexon
TCONS_00008822-exon-sc0000088-1491911889:69668..69811TCONS_00008822-exon-sc0000088-1491911889:69668..69811Clytia hemisphaericaexon
TCONS_00008822-exon-sc0000088-1510915933:69668..69811TCONS_00008822-exon-sc0000088-1510915933:69668..69811Clytia hemisphaericaexon
TCONS_00008822-exon-sc0000088-1575043694:69668..69811TCONS_00008822-exon-sc0000088-1575043694:69668..69811Clytia hemisphaericaexon
TCONS_00008822-exon-sc0000088-1491911889:70239..70358TCONS_00008822-exon-sc0000088-1491911889:70239..70358Clytia hemisphaericaexon
TCONS_00008822-exon-sc0000088-1510915933:70239..70358TCONS_00008822-exon-sc0000088-1510915933:70239..70358Clytia hemisphaericaexon
TCONS_00008822-exon-sc0000088-1575043694:70239..70358TCONS_00008822-exon-sc0000088-1575043694:70239..70358Clytia hemisphaericaexon
TCONS_00008822-exon-sc0000088-1491911889:70921..71696TCONS_00008822-exon-sc0000088-1491911889:70921..71696Clytia hemisphaericaexon
TCONS_00008822-exon-sc0000088-1510915933:70921..71696TCONS_00008822-exon-sc0000088-1510915933:70921..71696Clytia hemisphaericaexon
TCONS_00008822-exon-sc0000088-1575043694:70921..71696TCONS_00008822-exon-sc0000088-1575043694:70921..71696Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008822-proteinTCONS_00008822-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:69130..71696 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.271477	0.181526	0.469344	0.275764	0.0440956	0.0348449	0	0.0393563	0.204326	0.069334	0.0669771	0.292892	40.8794	44.6398	0.798743	1.72967	0.98609	3.01863	201.335	365.968	0.25687	0.212793	0.0480133	0.0520307	0.140427	0.031332	0.044836	0.0478502	0.0450387	0.0739529
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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