TCONS_00008819 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008819
Unique NameTCONS_00008819
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008819 ID=TCONS_00008819|Name=TCONS_00008819|organism=Clytia hemisphaerica|type=transcript|length=275bp
CAATGTTGCAAACGTTGGTTTGTCACTTTCGATGGACATGAATGTGCACC
TGTGCCGATAGACGGTATAGTTTACATGCATGAAGGGACCGGTAACAGAT
ATAAGAATCAACATCGACCACAAGTTATCACTGGACATTGCAAGATCTCG
AAAAGCAACATAATCAACGTGGCTCTCAATGTTGGAAATTGCAATGGTTA
CGGGAATGTAGACGCTCAAACCGGCTGGAATTCGGCAACTCGAATACAAA
TTGAAGAGGTTGATGAACCACAACA
Run BLAST on NCBI

transcript from alignment at sc0000087:609664..609938

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008819 ID=TCONS_00008819|Name=TCONS_00008819|organism=Clytia hemisphaerica|type=transcript|length=275bp|location=Sequence derived from alignment at sc0000087:609664..609938 (Clytia hemisphaerica)
TGTTGTGGTTCATCAACCTCTTCAATTTGTATTCGAGTTGCCGAATTCCA
GCCGGTTTGAGCGTCTACATTCCCGTAACCATTGCAATTTCCAACATTGA
GAGCCACGTTGATTATGTTGCTTTTCGAGATCTTGCAATGTCCAGTGATA
ACTTGTGGTCGATGTTGATTCTTATATCTGTTACCGGTCCCTTCATGCAT
GTAAACTATACCGTCTATCGGCACAGGTGCACATTCATGTCCATCGAAAG
TGACAAACCAACGTTTGCAACATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004954XLOC_004954Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008819-exon-sc0000087-1491911889:609664..609938TCONS_00008819-exon-sc0000087-1491911889:609664..609938Clytia hemisphaericaexon
TCONS_00008819-exon-sc0000087-1510915933:609664..609938TCONS_00008819-exon-sc0000087-1510915933:609664..609938Clytia hemisphaericaexon
TCONS_00008819-exon-sc0000087-1575043694:609664..609938TCONS_00008819-exon-sc0000087-1575043694:609664..609938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:609664..609938 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.528573	0.411114	0.598477	0.585517	0.71281	0.563272	2.03869	2.5448	0.445418	0	4.06799	0	24.6882	11.0295	93.644	210.007	2.77758	16.2682	2.44635	1.80615	1.2609	0	2.89444	0	0	0	0	0	0	0.597729
Blast
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BLAST of TCONS_00008819 vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.809e-20
Identity = 39/91 (42.86%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    4 CCKRWFVTFDGHECA-PVPIDGIVYMHEGTG--NRYKNQHRPQVITGHCKISKSNIINVALNVGNCNGYGNVDAQTGWNSATRIQIEEVDE 267
            CC+RW+ TF+G EC+ P+PI+ I+Y+ +G+   N   N HR   + G C+   + +++VA+ VG C+ Y   DA TGWNS +RI IEE+ +
Sbjct:  153 CCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKGDASTGWNSVSRIIIEELPK 243
The following BLAST results are available for this feature:
BLAST of TCONS_00008819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR11.809e-2042.86Collagen triple helix repeat-containing protein 1 ... [more]
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