TCONS_00008811 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008811
Unique NameTCONS_00008811
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1896

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008811 ID=TCONS_00008811|Name=TCONS_00008811|organism=Clytia hemisphaerica|type=transcript|length=1896bp
TGTTTCCAAGAAAATGAATAATTTCCATGAGttcatcattaaaaaaattg
attcaaTTAATAGTGTTTCAGTACATTTTATATACAACTGAAAATAATAG
CTTGCTCATCAGTTACTTTGCTTCATTCGTTACTCAATTCACTGTTGACC
GAAAAACTGATTATTCTGCTACAATtgagtctccttaactcgaacacgca
cggggaacagtGATTTGCTCAGATTAAAGAAATTCCGAGTTATTGAGTAA
GGTTAATAAGGCTAAAGGGACCATAGACATTGAGTTTAACGCCCGAAGGG
CTGGAGTAGAATCTCTATCCTTTCCCAGGCaacaaaaagtgaagccactt
attttccatccagaacatgcctagaacgcgccgcaatcatgacgacggat
tgtatttagtggttcttttgtttttgaggactgcatttttactttcaatc
cagcgtttgtgtgaaaaccacgcgcggCCGTTCTGGATTGGAAATAAATG
GCTTTATTTCTCATCCaagagtctcgagtctagcccttcgggcttggaaa
tCAATGACCGTAGAACTTGTTCGAATGCTTGGGATTCGAGCACAGTCCAT
GGtggtgcaagtctgtgatcggAACCTTCATACTACCGATCTAATTTTCA
ATTAGCACATGTGAAAATAACGTTGATGTCTAGCGCTTTCgaatcaagat
ggcggatgaTTTCAGTGGCCGTGTTTTGCTACTTCGGTCAGTTATCTGTT
CCCATCTTATACCCTGGTAAGCACCAATCGGTGTGCCAAATACACTATTC
AAGTGACACATAGCACAATTTTTATACCACCAACCAGTATTTTTAAAAGC
TTCTGAACATGGTTTATGTTGACTGCCTCTTGCATCATTATCAGAATcga
atgttgaaaatttcatcccgTTATAATAAACCATATCAAATCCATCTGCA
CGTGGTGTTTCATATGGAAACGGAGGTAACGCTGGTCCGTACACGTGTTG
ATATGCACCAATATTGATCTCATATTTACTGTCGTCGTCACCGATATTGA
ATCCATCGTAAAAAGGGTAATAGAAAATACCATCGTAGCTTTCAAGCTCG
AAAATGATTTCATTATCGGTGTTGGGTTTTGATAGTTGATGTAGTTTTTC
GTTGCCGTACCAAAAATCTTTGGATAAATCACCGAAGCCAGCTTTGTACT
CGTTCCATGATTTATCGAAAGTGATATCACCGTATTTGCGTCTTTGGACT
ACTGTCCATCCACCATCAAGAAGGGACATTCTGCAACGAATTGACCGATA
CATAGATGGTTCTTCAGGGATTTCAACTCCATAAACACCATCCATTGACC
AACCTTTCTTTGAGATATCTTTACAATCAGTCGCATTCTTTACCAAAGAG
ATAAACTTGATTTTAGAGTCAAAATCCACATCACAGTCTCGCTTCTCAAA
ATACTGAGCTGACGGTGAATGTTTTATTTTGGTGGTTATAGTGAGTCTGC
TGATGTTTTTTAAATGACATGCGTTGGTATCATCGAAGAACGTCGCTGAT
TTACATGCATTTCCTTTATTTCTACATTGATTGAAACAATTGGAAGGTGA
AGTTGCCACAACCTGTTCATCCAGCGCGAGAGATTCGGTACTGAAGATTT
CTAGTCCGGTTCGAGATTTTGTAAACAGTACATCTGTAGGATCACATTCA
TATGTCAAACCAAGCACACAgtcaaaatataacaaaattgTAAACAGGAA
ACAAATTGGAGTCACAATTTCCATCGTGTATTATCCATGGATTTTTACCA
TCGATTTTTTCGTTTATTCTTCTTTCAGACCTCGCTTCAAATAGTCTTTG
TAAGCCTTTTCATTAACAAATCTACTGATTTTTCATGTTATCttca
Run BLAST on NCBI

protein sequence of TCONS_00008811-protein

>TCONS_00008811-protein ID=TCONS_00008811-protein|Name=TCONS_00008811-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
MEIVTPICFLFTILLYFDCVLGLTYECDPTDVLFTKSRTGLEIFSTESLA
LDEQVVATSPSNCFNQCRNKGNACKSATFFDDTNACHLKNISRLTITTKI
KHSPSAQYFEKRDCDVDFDSKIKFISLVKNATDCKDISKKGWSMDGVYGV
EIPEEPSMYRSIRCRMSLLDGGWTVVQRRKYGDITFDKSWNEYKAGFGDL
SKDFWYGNEKLHQLSKPNTDNEIIFELESYDGIFYYPFYDGFNIGDDDSK
YEINIGAYQHVYGPALPPFPYETPRADGFDMVYYNGMKFSTFDSDNDARG
SQHKPCSEAFKNTGWWYKNCAMCHLNSVFGTPIGAYQGIRWEQITDRSSK
TRPLKSSAILIRKR
Run BLAST on NCBI

transcript from alignment at sc0000087:425148..427043

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008811 ID=TCONS_00008811|Name=TCONS_00008811|organism=Clytia hemisphaerica|type=transcript|length=1896bp|location=Sequence derived from alignment at sc0000087:425148..427043 (Clytia hemisphaerica)
tgaaGATAACATGAAAAATCAGTAGATTTGTTAATGAAAAGGCTTACAAA
GACTATTTGAAGCGAGGTCTGAAAGAAGAATAAACGAAAAAATCGATGGT
AAAAATCCATGGATAATACACGATGGAAATTGTGACTCCAATTTGTTTCC
TGTTTAcaattttgttatattttgacTGTGTGCTTGGTTTGACATATGAA
TGTGATCCTACAGATGTACTGTTTACAAAATCTCGAACCGGACTAGAAAT
CTTCAGTACCGAATCTCTCGCGCTGGATGAACAGGTTGTGGCAACTTCAC
CTTCCAATTGTTTCAATCAATGTAGAAATAAAGGAAATGCATGTAAATCA
GCGACGTTCTTCGATGATACCAACGCATGTCATTTAAAAAACATCAGCAG
ACTCACTATAACCACCAAAATAAAACATTCACCGTCAGCTCAGTATTTTG
AGAAGCGAGACTGTGATGTGGATTTTGACTCTAAAATCAAGTTTATCTCT
TTGGTAAAGAATGCGACTGATTGTAAAGATATCTCAAAGAAAGGTTGGTC
AATGGATGGTGTTTATGGAGTTGAAATCCCTGAAGAACCATCTATGTATC
GGTCAATTCGTTGCAGAATGTCCCTTCTTGATGGTGGATGGACAGTAGTC
CAAAGACGCAAATACGGTGATATCACTTTCGATAAATCATGGAACGAGTA
CAAAGCTGGCTTCGGTGATTTATCCAAAGATTTTTGGTACGGCAACGAAA
AACTACATCAACTATCAAAACCCAACACCGATAATGAAATCATTTTCGAG
CTTGAAAGCTACGATGGTATTTTCTATTACCCTTTTTACGATGGATTCAA
TATCGGTGACGACGACAGTAAATATGAGATCAATATTGGTGCATATCAAC
ACGTGTACGGACCAGCGTTACCTCCGTTTCCATATGAAACACCACGTGCA
GATGGATTTGATATGGTTTATTATAAcgggatgaaattttcaacattcgA
TTCTGATAATGATGCAAGAGGCAGTCAACATAAACCATGTTCAGAAGCTT
TTAAAAATACTGGTTGGTGGTATAAAAATTGTGCTATGTGTCACTTGAAT
AGTGTATTTGGCACACCGATTGGTGCTTACCAGGGTATAAGATGGGAACA
GATAACTGACCGAAGTAGCAAAACACGGCCACTGAAAtcatccgccatct
tgattcGAAAGCGCTAGACATCAACGTTATTTTCACATGTGCTAATTGAA
AATTAGATCGGTAGTATGAAGGTTccgatcacagacttgcaccaCCATGG
ACTGTGCTCGAATCCCAAGCATTCGAACAAGTTCTACGGTCATTGatttc
caagcccgaagggctagactcgagactcttGGATGAGAAATAAAGCCATT
TATTTCCAATCCAGAACGGccgcgcgtggttttcacacaaacgctggatt
gaaagtaaaaatgcagtcctcaaaaacaaaagaaccactaaatacaatcc
gtcgtcatgattgcggcgcgttctaggcatgttctggatggaaaataagt
ggcttcactttttgttGCCTGGGAAAGGATAGAGATTCTACTCCAGCCCT
TCGGGCGTTAAACTCAATGTCTATGGTCCCTTTAGCCTTATTAACCTTAC
TCAATAACTCGGAATTTCTTTAATCTGAGCAAATCactgttccccgtgcg
tgttcgagttaaggagactcaATTGTAGCAGAATAATCAGTTTTTCGGTC
AACAGTGAATTGAGTAACGAATGAAGCAAAGTAACTGATGAGCAAGCTAT
TATTTTCAGTTGTATATAAAATGTACTGAAACACTATTAAttgaatcaat
ttttttaatgatgaaCTCATGGAAATTATTCATTTTCTTGGAAACA

Coding sequence (CDS) from alignment at sc0000087:425148..427043

>TCONS_00008811 ID=TCONS_00008811|Name=TCONS_00008811|organism=Clytia hemisphaerica|type=CDS|length=1095bp|location=Sequence derived from alignment at sc0000087:425148..427043 (Clytia hemisphaerica)
ATGGAAATTGTGACTCCAATTTGTTTCCTGTTTAcaattttgttatattt
tgacTGTGTGCTTGGTTTGACATATGAATGTGATCCTACAGATGTACTGT
TTACAAAATCTCGAACCGGACTAGAAATCTTCAGTACCGAATCTCTCGCG
CTGGATGAACAGGTTGTGGCAACTTCACCTTCCAATTGTTTCAATCAATG
TAGAAATAAAGGAAATGCATGTAAATCAGCGACGTTCTTCGATGATACCA
ACGCATGTCATTTAAAAAACATCAGCAGACTCACTATAACCACCAAAATA
AAACATTCACCGTCAGCTCAGTATTTTGAGAAGCGAGACTGTGATGTGGA
TTTTGACTCTAAAATCAAGTTTATCTCTTTGGTAAAGAATGCGACTGATT
GTAAAGATATCTCAAAGAAAGGTTGGTCAATGGATGGTGTTTATGGAGTT
GAAATCCCTGAAGAACCATCTATGTATCGGTCAATTCGTTGCAGAATGTC
CCTTCTTGATGGTGGATGGACAGTAGTCCAAAGACGCAAATACGGTGATA
TCACTTTCGATAAATCATGGAACGAGTACAAAGCTGGCTTCGGTGATTTA
TCCAAAGATTTTTGGTACGGCAACGAAAAACTACATCAACTATCAAAACC
CAACACCGATAATGAAATCATTTTCGAGCTTGAAAGCTACGATGGTATTT
TCTATTACCCTTTTTACGATGGATTCAATATCGGTGACGACGACAGTAAA
TATGAGATCAATATTGGTGCATATCAACACGTGTACGGACCAGCGTTACC
TCCGTTTCCATATGAAACACCACGTGCAGATGGATTTGATATGGTTTATT
ATAAcgggatgaaattttcaacattcgATTCTGATAATGATGCAAGAGGC
AGTCAACATAAACCATGTTCAGAAGCTTTTAAAAATACTGGTTGGTGGTA
TAAAAATTGTGCTATGTGTCACTTGAATAGTGTATTTGGCACACCGATTG
GTGCTTACCAGGGTATAAGATGGGAACAGATAACTGACCGAAGTAGCAAA
ACACGGCCACTGAAAtcatccgccatcttgattcGAAAGCGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004946XLOC_004946Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008811-proteinTCONS_00008811-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008811-exon-sc0000087-1491911889:425148..427043TCONS_00008811-exon-sc0000087-1491911889:425148..427043Clytia hemisphaericaexon
TCONS_00008811-exon-sc0000087-1510915933:425148..427043TCONS_00008811-exon-sc0000087-1510915933:425148..427043Clytia hemisphaericaexon
TCONS_00008811-exon-sc0000087-1575043694:425148..427043TCONS_00008811-exon-sc0000087-1575043694:425148..427043Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:425148..427043 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.231331	0.205076	0.627761	0.419322	0.324245	0.201696	2.02701	2.50185	2.6228	1.62927	0.937477	1.97427	5.14255	4.09061	1.00216	1.17953	0.820934	1.44014	8.01958	9.26917	2.75145	2.72128	0.875165	1.29029	1.46397	2.42289	0.597986	0.4924	0.14005	0.0951262
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003609Pan_app
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
Blast
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BLAST of TCONS_00008811 vs. Swiss-Prot (Human)
Match: ANGP4 (Angiopoietin-4 OS=Homo sapiens GN=ANGPT4 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.361e-27
Identity = 73/234 (31.20%), Postives = 116/234 (49.57%), Query Frame = -3 
Query:  689 DCKDISKKGWSMDGVYGVEIPEEPSMYRSIRCRMSLLDGGWTVVQRRKYGDITFDKSWNEYKAGFGDLSKDFWYGNEKLHQLSKPNTDNEIIFELESYDGIFYYPFYDGFNIGDDDSKYEINIGAYQHVYGPALPPFPYETPRADGFDMVYYNGMKFSTFDSDNDARGSQHKPCSEA-FKNTGWWYKNCAMCHLNSV-FGTPIGAYQ--GIRWEQITDRSSKTRPLKSSAILIR 1378
            DC +I + G S  GVY +++    +  R + C +    G WT++QRR+ G + F ++W +YK GFGD + + W GNE +HQL++      +  EL+ ++G   Y  Y+ F++G ++  Y +++  Y    G                 +V  N   FST DSDND     H  C  A   + GWW+  C + +LN V +  P   Y+  GIRW      S     L++S ++IR
Sbjct:  290 DCAEIQRSGASASGVYTIQV-SNATKPRKVFCDLQSSGGRWTLIQRRENGTVNFQRNWKDYKQGFGDPAGEHWLGNEVVHQLTR-RAAYSLRVELQDWEGHEAYAQYEHFHLGSENQLYRLSVVGYSGSAGRQ-------------SSLVLQN-TSFSTLDSDND-----HCLCKCAQVMSGGWWFDACGLSNLNGVYYHAPDNKYKMDGIRWHYFKGPSYS---LRASRMMIR 499
The following BLAST results are available for this feature:
BLAST of TCONS_00008811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGP41.361e-2731.20Angiopoietin-4 OS=Homo sapiens GN=ANGPT4 PE=1 SV=1[more]
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