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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008807 ID=TCONS_00008807|Name=TCONS_00008807|organism=Clytia hemisphaerica|type=transcript|length=1695bp
GCGAATTCAGTTGACCATGCGTTGCTTGGTGAAGATGGTTCATAAACGTT
TCATGTTCAGTTTCCCTAATCCTTTTTATATCCTTTGCCGCTTTTGAAGT
TTGAACTGTAGCACGATTCAATGCATCTACGAACTCTTCCTTTTGGTCTG
CAGGAAGATAATCAGCAGTTTTACTCATAGACTCATTTATCGTCTTAAAT
ACGTCTTTTCCATCTGAAATATCATCGATGAAGCGTTGGTTATCTTTGGC
TTGTCGCTGATGCTCTTTTTCTATTTGCTCTCGAAACTGATCAGGCATTT
GCATTTCATGGTATTCGGTACCTAATTCTCCATTGAGCCTTGTCCTAAAC
TGTTCACTAAGTTTTAATGCATCAATACTAGTAGTCAAACCATCAATATT
AGAACGCgatttaagaacattgatatcCTCCAGTAGCCCATTAGCAGCTA
TTCTGAAggcttgttttgttttgggaTTGTTTTCAATATTTCCGAGTCCC
TTTTCCATGTGAGATTTAATATCACCTTCTACTTTGGCTTGTGCATCTGG
CGTCTCCATCTTATTCTTTATATCGCTGTATAATCTTTTGATAGTGCAAT
GAAAGTTATCCTCACCTTCTAACGTCGACCAGAATTTACAAAGCTCCAAA
GCCAATTCAcccattttcttgaaatatcttTTAGGATATCCTTCAAGTAA
ATTGATCTCATCAACAAAGTAAGATGGTAGATATCCTTTGGATAAACTTT
CAGCAAAACGCTCATACAACATTATGACAACTTGACAATAACTTTTTCTC
TCTTCCCAATCTTTCCAGTGTTCTGGTGGAGTTTGTTCCAACATGTGCAA
CATTGTTGTTTTAAGGAGATACGAAGAAATATGCCGGCCTGTCTCTGGAT
CATCTATTTGTTTAAGGTTTGCATAATACATAAATTTGGCCAATAAATAA
cacttattttgaaaatgagattttcttttagctaaaatgacttcagcttt
ggaaaaagaaattctccacTCGTCATTTCTGTCGGATCCAGGTGTTGATT
TCAAAACCAAATGACATTTATTGTCGTCAATTTCTTTGATGATTTCAGGG
GATGGCCAATAACGTTCCCGTTCAAACCAAGGATGCAAAAAGTCCGGCCA
AAAGTCAAGTTCAATGCACTTTATATAATCAATTTCGATGTGAACCACAA
AATTCACATCTGAGAAAAGGTTCGGTGTCCCTTTGTTATGTTTATATCCT
AATTCAGTGCTTTCGTCACCATCGTTATTCGAAAGGGCCCGTCCATTGAT
ATCAATGCTTTCCCCATCTAGATATTCCGGATTATAATTATTATCCAGCA
ATAATAAAGATTGATGGAAATCTTGTTGCAAACATCCTCTCAACTCTTCA
TTCCATTTCACACGATAATATCCGATAACGTTAGTTGATTCTAAAACTTT
GTTCTTTTGATTGGCAGGGATTTTAGCAAAAGGTTTCATGATATCCATTT
CAATGTTGGTAACTATTTCATAAACACCACGACAAATGAACGCTCCTTCG
GCTGCGCTTCCTGTCATAAAAGCAACATCATTTTGGCCTGTCATTTTATC
ATTACTAAACGGTTCTCGTTGCTTGCAATCATACTTATACATTTCATCAA
TATAAGATGTATTGTCATTGGACGTAGCCATTGTGCTTGCGTTTC Run BLAST on NCBI protein sequence of TCONS_00008807-protein >TCONS_00008807-protein ID=TCONS_00008807-protein|Name=TCONS_00008807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=564bp
NASTMATSNDNTSYIDEMYKYDCKQREPFSNDKMTGQNDVAFMTGSAAEG
AFICRGVYEIVTNIEMDIMKPFAKIPANQKNKVLESTNVIGYYRVKWNEE
LRGCLQQDFHQSLLLLDNNYNPEYLDGESIDINGRALSNNDGDESTELGY
KHNKGTPNLFSDVNFVVHIEIDYIKCIELDFWPDFLHPWFERERYWPSPE
IIKEIDDNKCHLVLKSTPGSDRNDEWRISFSKAEVILAKRKSHFQNKCYL
LAKFMYYANLKQIDDPETGRHISSYLLKTTMLHMLEQTPPEHWKDWEERK
SYCQVVIMLYERFAESLSKGYLPSYFVDEINLLEGYPKRYFKKMGELALE
LCKFWSTLEGEDNFHCTIKRLYSDIKNKMETPDAQAKVEGDIKSHMEKGL
GNIENNPKTKQAFRIAANGLLEDINVLKSRSNIDGLTTSIDALKLSEQFR
TRLNGELGTEYHEMQMPDQFREQIEKEHQRQAKDNQRFIDDISDGKDVFK
TINESMSKTADYLPADQKEEFVDALNRATVQTSKAAKDIKRIRETEHETF
MNHLHQATHGQLNS Run BLAST on NCBI transcript from alignment at sc0000087:237881..239575 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008807 ID=TCONS_00008807|Name=TCONS_00008807|organism=Clytia hemisphaerica|type=transcript|length=1695bp|location=Sequence derived from alignment at sc0000087:237881..239575 (Clytia hemisphaerica)
GAAACGCAAGCACAATGGCTACGTCCAATGACAATACATCTTATATTGAT
GAAATGTATAAGTATGATTGCAAGCAACGAGAACCGTTTAGTAATGATAA
AATGACAGGCCAAAATGATGTTGCTTTTATGACAGGAAGCGCAGCCGAAG
GAGCGTTCATTTGTCGTGGTGTTTATGAAATAGTTACCAACATTGAAATG
GATATCATGAAACCTTTTGCTAAAATCCCTGCCAATCAAAAGAACAAAGT
TTTAGAATCAACTAACGTTATCGGATATTATCGTGTGAAATGGAATGAAG
AGTTGAGAGGATGTTTGCAACAAGATTTCCATCAATCTTTATTATTGCTG
GATAATAATTATAATCCGGAATATCTAGATGGGGAAAGCATTGATATCAA
TGGACGGGCCCTTTCGAATAACGATGGTGACGAAAGCACTGAATTAGGAT
ATAAACATAACAAAGGGACACCGAACCTTTTCTCAGATGTGAATTTTGTG
GTTCACATCGAAATTGATTATATAAAGTGCATTGAACTTGACTTTTGGCC
GGACTTTTTGCATCCTTGGTTTGAACGGGAACGTTATTGGCCATCCCCTG
AAATCATCAAAGAAATTGACGACAATAAATGTCATTTGGTTTTGAAATCA
ACACCTGGATCCGACAGAAATGACGAgtggagaatttctttttccaaagc
tgaagtcattttagctaaaagaaaatctcattttcaaaataagtgTTATT
TATTGGCCAAATTTATGTATTATGCAAACCTTAAACAAATAGATGATCCA
GAGACAGGCCGGCATATTTCTTCGTATCTCCTTAAAACAACAATGTTGCA
CATGTTGGAACAAACTCCACCAGAACACTGGAAAGATTGGGAAGAGAGAA
AAAGTTATTGTCAAGTTGTCATAATGTTGTATGAGCGTTTTGCTGAAAGT
TTATCCAAAGGATATCTACCATCTTACTTTGTTGATGAGATCAATTTACT
TGAAGGATATCCTAAaagatatttcaagaaaatgggTGAATTGGCTTTGG
AGCTTTGTAAATTCTGGTCGACGTTAGAAGGTGAGGATAACTTTCATTGC
ACTATCAAAAGATTATACAGCGATATAAAGAATAAGATGGAGACGCCAGA
TGCACAAGCCAAAGTAGAAGGTGATATTAAATCTCACATGGAAAAGGGAC
TCGGAAATATTGAAAACAAtcccaaaacaaaacaagccTTCAGAATAGCT
GCTAATGGGCTACTGGAGgatatcaatgttcttaaatcGCGTTCTAATAT
TGATGGTTTGACTACTAGTATTGATGCATTAAAACTTAGTGAACAGTTTA
GGACAAGGCTCAATGGAGAATTAGGTACCGAATACCATGAAATGCAAATG
CCTGATCAGTTTCGAGAGCAAATAGAAAAAGAGCATCAGCGACAAGCCAA
AGATAACCAACGCTTCATCGATGATATTTCAGATGGAAAAGACGTATTTA
AGACGATAAATGAGTCTATGAGTAAAACTGCTGATTATCTTCCTGCAGAC
CAAAAGGAAGAGTTCGTAGATGCATTGAATCGTGCTACAGTTCAAACTTC
AAAAGCGGCAAAGGATATAAAAAGGATTAGGGAAACTGAACATGAAACGT
TTATGAACCATCTTCACCAAGCAACGCATGGTCAACTGAATTCGC Coding sequence (CDS) from alignment at sc0000087:237881..239575 >TCONS_00008807 ID=TCONS_00008807|Name=TCONS_00008807|organism=Clytia hemisphaerica|type=CDS|length=1692bp|location=Sequence derived from alignment at sc0000087:237881..239575 (Clytia hemisphaerica)
AACGCAAGCACAATGGCTACGTCCAATGACAATACATCTTATATTGATGA
AATGTATAAGTATGATTGCAAGCAACGAGAACCGTTTAGTAATGATAAAA
TGACAGGCCAAAATGATGTTGCTTTTATGACAGGAAGCGCAGCCGAAGGA
GCGTTCATTTGTCGTGGTGTTTATGAAATAGTTACCAACATTGAAATGGA
TATCATGAAACCTTTTGCTAAAATCCCTGCCAATCAAAAGAACAAAGTTT
TAGAATCAACTAACGTTATCGGATATTATCGTGTGAAATGGAATGAAGAG
TTGAGAGGATGTTTGCAACAAGATTTCCATCAATCTTTATTATTGCTGGA
TAATAATTATAATCCGGAATATCTAGATGGGGAAAGCATTGATATCAATG
GACGGGCCCTTTCGAATAACGATGGTGACGAAAGCACTGAATTAGGATAT
AAACATAACAAAGGGACACCGAACCTTTTCTCAGATGTGAATTTTGTGGT
TCACATCGAAATTGATTATATAAAGTGCATTGAACTTGACTTTTGGCCGG
ACTTTTTGCATCCTTGGTTTGAACGGGAACGTTATTGGCCATCCCCTGAA
ATCATCAAAGAAATTGACGACAATAAATGTCATTTGGTTTTGAAATCAAC
ACCTGGATCCGACAGAAATGACGAgtggagaatttctttttccaaagctg
aagtcattttagctaaaagaaaatctcattttcaaaataagtgTTATTTA
TTGGCCAAATTTATGTATTATGCAAACCTTAAACAAATAGATGATCCAGA
GACAGGCCGGCATATTTCTTCGTATCTCCTTAAAACAACAATGTTGCACA
TGTTGGAACAAACTCCACCAGAACACTGGAAAGATTGGGAAGAGAGAAAA
AGTTATTGTCAAGTTGTCATAATGTTGTATGAGCGTTTTGCTGAAAGTTT
ATCCAAAGGATATCTACCATCTTACTTTGTTGATGAGATCAATTTACTTG
AAGGATATCCTAAaagatatttcaagaaaatgggTGAATTGGCTTTGGAG
CTTTGTAAATTCTGGTCGACGTTAGAAGGTGAGGATAACTTTCATTGCAC
TATCAAAAGATTATACAGCGATATAAAGAATAAGATGGAGACGCCAGATG
CACAAGCCAAAGTAGAAGGTGATATTAAATCTCACATGGAAAAGGGACTC
GGAAATATTGAAAACAAtcccaaaacaaaacaagccTTCAGAATAGCTGC
TAATGGGCTACTGGAGgatatcaatgttcttaaatcGCGTTCTAATATTG
ATGGTTTGACTACTAGTATTGATGCATTAAAACTTAGTGAACAGTTTAGG
ACAAGGCTCAATGGAGAATTAGGTACCGAATACCATGAAATGCAAATGCC
TGATCAGTTTCGAGAGCAAATAGAAAAAGAGCATCAGCGACAAGCCAAAG
ATAACCAACGCTTCATCGATGATATTTCAGATGGAAAAGACGTATTTAAG
ACGATAAATGAGTCTATGAGTAAAACTGCTGATTATCTTCCTGCAGACCA
AAAGGAAGAGTTCGTAGATGCATTGAATCGTGCTACAGTTCAAACTTCAA
AAGCGGCAAAGGATATAAAAAGGATTAGGGAAACTGAACATGAAACGTTT
ATGAACCATCTTCACCAAGCAACGCATGGTCAACTGAATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008807-exon-sc0000087-1491911889:237881..239575 | TCONS_00008807-exon-sc0000087-1491911889:237881..239575 | Clytia hemisphaerica | exon |
| TCONS_00008807-exon-sc0000087-1510915933:237881..239575 | TCONS_00008807-exon-sc0000087-1510915933:237881..239575 | Clytia hemisphaerica | exon |
| TCONS_00008807-exon-sc0000087-1575043694:237881..239575 | TCONS_00008807-exon-sc0000087-1575043694:237881..239575 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:237881..239575 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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