TCONS_00008806 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008806
Unique NameTCONS_00008806
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008806 ID=TCONS_00008806|Name=TCONS_00008806|organism=Clytia hemisphaerica|type=transcript|length=628bp
GTTCATATTAGTGTTTGCCTTATCTATTGCGTCTGGCCTCGTCATCTTAT
CTTTAATGTTGTTGAATAGTTTTTTAATCTCAACATGAAAGTATTCCTCG
CCTTTCGAAGTTGACCACATTTTGCAGAGTTCCAAGATCTTTtcctgcat
ttctttcaaatacTTTTTAGAATATCCTTCAAGTAAATTGATCTCATCGA
CAAAGTAAGATGGTAGATATCCTTTGGATAAACTTTCAGCAAGGCGCTCA
TACAACATGATGACAACTTGACAATAGCTTTTTCTCTCTTCCCAATATTT
CCAGTGTTCCGGTGGAGTTTGTTCCAACATGTGCAACATTGTTGTTTTAA
GGAGATACGAAGAAATATGCCGGCCTGTCTCTGGATCATCTATTTGTTTA
AGGTTTGCATAATACATAAATTTGGCCAATAAATAAcacttattttgaaa
atgagattttcttttagctaaaatgacttcagctttggaaaaagaaattc
tccacTCGTCATTTCTGTCGGATCCAGGTGTTGATTTCAAAACCAAATGA
CATTTATTGTCGTCAATTTCTTTGACGATTTCAGGGGATGGCCAATAACG
TTCCCGTTCAAACCAAGGATGCACAAAG
Run BLAST on NCBI

protein sequence of TCONS_00008806-protein

>TCONS_00008806-protein ID=TCONS_00008806-protein|Name=TCONS_00008806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
FVHPWFERERYWPSPEIVKEIDDNKCHLVLKSTPGSDRNDEWRISFSKAE
VILAKRKSHFQNKCYLLAKFMYYANLKQIDDPETGRHISSYLLKTTMLHM
LEQTPPEHWKYWEERKSYCQVVIMLYERLAESLSKGYLPSYFVDEINLLE
GYSKKYLKEMQEKILELCKMWSTSKGEEYFHVEIKKLFNNIKDKMTRPDA
IDKANTNMN
Run BLAST on NCBI

transcript from alignment at sc0000087:231759..232386

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008806 ID=TCONS_00008806|Name=TCONS_00008806|organism=Clytia hemisphaerica|type=transcript|length=628bp|location=Sequence derived from alignment at sc0000087:231759..232386 (Clytia hemisphaerica)
CTTTGTGCATCCTTGGTTTGAACGGGAACGTTATTGGCCATCCCCTGAAA
TCGTCAAAGAAATTGACGACAATAAATGTCATTTGGTTTTGAAATCAACA
CCTGGATCCGACAGAAATGACGAgtggagaatttctttttccaaagctga
agtcattttagctaaaagaaaatctcattttcaaaataagtgTTATTTAT
TGGCCAAATTTATGTATTATGCAAACCTTAAACAAATAGATGATCCAGAG
ACAGGCCGGCATATTTCTTCGTATCTCCTTAAAACAACAATGTTGCACAT
GTTGGAACAAACTCCACCGGAACACTGGAAATATTGGGAAGAGAGAAAAA
GCTATTGTCAAGTTGTCATCATGTTGTATGAGCGCCTTGCTGAAAGTTTA
TCCAAAGGATATCTACCATCTTACTTTGTCGATGAGATCAATTTACTTGA
AGGATATTCTAAAAAgtatttgaaagaaatgcaggaAAAGATCTTGGAAC
TCTGCAAAATGTGGTCAACTTCGAAAGGCGAGGAATACTTTCATGTTGAG
ATTAAAAAACTATTCAACAACATTAAAGATAAGATGACGAGGCCAGACGC
AATAGATAAGGCAAACACTAATATGAAC

Coding sequence (CDS) from alignment at sc0000087:231759..232386

>TCONS_00008806 ID=TCONS_00008806|Name=TCONS_00008806|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0000087:231759..232386 (Clytia hemisphaerica)
TTTGTGCATCCTTGGTTTGAACGGGAACGTTATTGGCCATCCCCTGAAAT
CGTCAAAGAAATTGACGACAATAAATGTCATTTGGTTTTGAAATCAACAC
CTGGATCCGACAGAAATGACGAgtggagaatttctttttccaaagctgaa
gtcattttagctaaaagaaaatctcattttcaaaataagtgTTATTTATT
GGCCAAATTTATGTATTATGCAAACCTTAAACAAATAGATGATCCAGAGA
CAGGCCGGCATATTTCTTCGTATCTCCTTAAAACAACAATGTTGCACATG
TTGGAACAAACTCCACCGGAACACTGGAAATATTGGGAAGAGAGAAAAAG
CTATTGTCAAGTTGTCATCATGTTGTATGAGCGCCTTGCTGAAAGTTTAT
CCAAAGGATATCTACCATCTTACTTTGTCGATGAGATCAATTTACTTGAA
GGATATTCTAAAAAgtatttgaaagaaatgcaggaAAAGATCTTGGAACT
CTGCAAAATGTGGTCAACTTCGAAAGGCGAGGAATACTTTCATGTTGAGA
TTAAAAAACTATTCAACAACATTAAAGATAAGATGACGAGGCCAGACGCA
ATAGATAAGGCAAACACTAATATGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004941XLOC_004941Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008806-exon-sc0000087-1491911889:231759..232386TCONS_00008806-exon-sc0000087-1491911889:231759..232386Clytia hemisphaericaexon
TCONS_00008806-exon-sc0000087-1510915933:231759..232386TCONS_00008806-exon-sc0000087-1510915933:231759..232386Clytia hemisphaericaexon
TCONS_00008806-exon-sc0000087-1575043694:231759..232386TCONS_00008806-exon-sc0000087-1575043694:231759..232386Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008806-proteinTCONS_00008806-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:231759..232386 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0514224	0.0224839	0.208139	0	0.602375	0.569802	0.995152	0.69355	0.11736	0.489466	0	0.142706	2.60164	2.15386	0.226744	0.328969	0.316543	0.231943	7.22019	7.6036	0.541498	0	0.473929	0.761041	0	0	0.309228	0.252585	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024810Mab-21_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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