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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008802 ID=TCONS_00008802|Name=TCONS_00008802|organism=Clytia hemisphaerica|type=transcript|length=1676bp
cttaaatgccatgacagaaaatacaatggaaaagctattaaaatcgactc
actcatgagcaaatgccaaattacaaatgccagttggtctaaacgcagcc
aatcaaggcaagttggttatctattgtTTTTACATCGTTGTTCTGAGTAT
AGAAGGTTGTCGCgaacaaaatgtaaaaaaatatataccaacaaaataat
tgtttttacaacagtcattatgattaaaaagaattaactttctttacaat
tttcatgacgttaaagttattgagaattgttttttgtaaaagttattcat
ataaacattgcaaatttagtgaaacacacacaagaactttcttttttata
gaagtggtacgattcgatacttttttttcgggacaccctgtagtaaCAAG
TCCTTGAGAACAAGATTCGTAATTAATTTATGCATTTTGAAAAGACTGTA
CGAGTCGTCAATCACATGATCTTGTCTGTTGGATAGATCAAACAAGCAAT
ACTATATTGTATAGCTGTCGTTGCCATGTGCATCAGTTCTCAATAAACTT
GGTGAGTCATAAATCACTTCACTGTTCAATTGCTTCATCGATTCGACGGG
TGAAGTATTTTTTGACCAGGGTAAAAGTTTTAATCGAAAAGAAGGTTGTT
TAATGTCTttcaaagttttggaaaaagatctctgaaaatcctttttgaAG
AAGGCGTAGATCAATGGATTAAGAAGAGATGGGAGATATCTGAGAATTGT
AATTCCACGTAATAAATCGTGAGATATATGAGGGAATTTATTAGTAAAGG
CTACCATGATACGAACTGCAAAATGAGGTGAACATAGGATCAGGAACGAT
AGAAACATGCATAGGTAAATCACAAATGCTTTGTACCTGAGGAAAATACT
TTTAATGTCAATCCGATGTTTTTGTTGGAAGCCATATATCAGAATCACCA
TGGCGATATACTGGACACATAACAAAATTCCTGGTAGAATCCAAAAACCA
ACTATTGTAAAAGTCACATGAAGTTGTTGATAATATTGCTTTCTGGGTGA
ATATCGGTACGTCAACTCCAACAACGGTAAAATGATAGAAACAAGCCATA
CTAATACAACCATAGGGATAACCCTTCGTTTACAAATCATAGATTTCAAA
TGCATCGGTCGGAATAAACCTACCATTCTTTCACCAGCCAATAACAGTAA
GTGGCCAATCGATCCTAGTAAGCAAATCTTACCAATAAGATACTCAGCat
tatgatattttttgaaGACCTGGTTGTTACATGTATTTGTAGAAATGAAA
TAGTAATAAGGTATAGAATGTAGCAGAGCGTGGAAACCAGTGCAAGCGTC
AATCAATGATAAACCCATCAAAATGTAATTACCAGCATTTCGAGTCAGTG
TTTTAGACGTTCTGATGTAGGTGAATATGAAGATGTTTACACTGGTGATT
GTTATACCCAAAATGAGTAACGGTATATGATACCATAGGATGAATTGATA
TAAACAGTATTTGTTAACACCTTGAATAATTGTTGTGTTGTTCATTGCTG
GAGATTCTCGGTGAAAAGAATTCTCTACCGCGATTGTTTACAACTTAATA
TCCTTTTCTGtaatgaaaaataagaaaatgtgaGATGAGAAAGATTTAAG
TTTAGCAGACAACCCATATTTTCAAC Run BLAST on NCBI protein sequence of TCONS_00008802-protein >TCONS_00008802-protein ID=TCONS_00008802-protein|Name=TCONS_00008802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
MNNTTIIQGVNKYCLYQFILWYHIPLLILGITITSVNIFIFTYIRTSKTL
TRNAGNYILMGLSLIDACTGFHALLHSIPYYYFISTNTCNNQVFKKYHNA
EYLIGKICLLGSIGHLLLLAGERMVGLFRPMHLKSMICKRRVIPMVVLVW
LVSIILPLLELTYRYSPRKQYYQQLHVTFTIVGFWILPGILLCVQYIAMV
ILIYGFQQKHRIDIKSIFLRYKAFVIYLCMFLSFLILCSPHFAVRIMVAF
TNKFPHISHDLLRGITILRYLPSLLNPLIYAFFKKDFQRSFSKTLKDIKQ
PSFRLKLLPWSKNTSPVESMKQLNSEVIYDSPSLLRTDAHGNDSYTI Run BLAST on NCBI transcript from alignment at sc0000087:139979..141654 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008802 ID=TCONS_00008802|Name=TCONS_00008802|organism=Clytia hemisphaerica|type=transcript|length=1676bp|location=Sequence derived from alignment at sc0000087:139979..141654 (Clytia hemisphaerica)
GTTGAAAATATGGGTTGTCTGCTAAACTTAAATCTTTCTCATCtcacatt
ttcttatttttcattaCAGAAAAGGATATTAAGTTGTAAACAATCGCGGT
AGAGAATTCTTTTCACCGAGAATCTCCAGCAATGAACAACACAACAATTA
TTCAAGGTGTTAACAAATACTGTTTATATCAATTCATCCTATGGTATCAT
ATACCGTTACTCATTTTGGGTATAACAATCACCAGTGTAAACATCTTCAT
ATTCACCTACATCAGAACGTCTAAAACACTGACTCGAAATGCTGGTAATT
ACATTTTGATGGGTTTATCATTGATTGACGCTTGCACTGGTTTCCACGCT
CTGCTACATTCTATACCTTATTACTATTTCATTTCTACAAATACATGTAA
CAACCAGGTCttcaaaaaatatcataatGCTGAGTATCTTATTGGTAAGA
TTTGCTTACTAGGATCGATTGGCCACTTACTGTTATTGGCTGGTGAAAGA
ATGGTAGGTTTATTCCGACCGATGCATTTGAAATCTATGATTTGTAAACG
AAGGGTTATCCCTATGGTTGTATTAGTATGGCTTGTTTCTATCATTTTAC
CGTTGTTGGAGTTGACGTACCGATATTCACCCAGAAAGCAATATTATCAA
CAACTTCATGTGACTTTTACAATAGTTGGTTTTTGGATTCTACCAGGAAT
TTTGTTATGTGTCCAGTATATCGCCATGGTGATTCTGATATATGGCTTCC
AACAAAAACATCGGATTGACATTAAAAGTATTTTCCTCAGGTACAAAGCA
TTTGTGATTTACCTATGCATGTTTCTATCGTTCCTGATCCTATGTTCACC
TCATTTTGCAGTTCGTATCATGGTAGCCTTTACTAATAAATTCCCTCATA
TATCTCACGATTTATTACGTGGAATTACAATTCTCAGATATCTCCCATCT
CTTCTTAATCCATTGATCTACGCCTTCTtcaaaaaggattttcagagatc
tttttccaaaactttgaaAGACATTAAACAACCTTCTTTTCGATTAAAAC
TTTTACCCTGGTCAAAAAATACTTCACCCGTCGAATCGATGAAGCAATTG
AACAGTGAAGTGATTTATGACTCACCAAGTTTATTGAGAACTGATGCACA
TGGCAACGACAGCTATACAATATAGTATTGCTTGTTTGATCTATCCAACA
GACAAGATCATGTGATTGACGACTCGTACAGTCTTTTCAAAATGCATAAA
TTAATTACGAATCTTGTTCTCAAGGACTTGttactacagggtgtcccgaa
aaaaaagtatcgaatcgtaccacttctataaaaaagaaagttcttgtgtg
tgtttcactaaatttgcaatgtttatatgaataacttttacaaaaaacaa
ttctcaataactttaacgtcatgaaaattgtaaagaaagttaattctttt
taatcataatgactgttgtaaaaacaattattttgttggtatatattttt
ttacattttgttcGCGACAACCTTCTATACTCAGAACAACGATGTAAAAa
caatagataaccaacttgccttgattggctgcgtttagaccaactggcat
ttgtaatttggcatttgctcatgagtgagtcgattttaatagcttttcca
ttgtattttctgtcatggcatttaag Coding sequence (CDS) from alignment at sc0000087:139979..141654 >TCONS_00008802 ID=TCONS_00008802|Name=TCONS_00008802|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0000087:139979..141654 (Clytia hemisphaerica)
ATGAACAACACAACAATTATTCAAGGTGTTAACAAATACTGTTTATATCA
ATTCATCCTATGGTATCATATACCGTTACTCATTTTGGGTATAACAATCA
CCAGTGTAAACATCTTCATATTCACCTACATCAGAACGTCTAAAACACTG
ACTCGAAATGCTGGTAATTACATTTTGATGGGTTTATCATTGATTGACGC
TTGCACTGGTTTCCACGCTCTGCTACATTCTATACCTTATTACTATTTCA
TTTCTACAAATACATGTAACAACCAGGTCttcaaaaaatatcataatGCT
GAGTATCTTATTGGTAAGATTTGCTTACTAGGATCGATTGGCCACTTACT
GTTATTGGCTGGTGAAAGAATGGTAGGTTTATTCCGACCGATGCATTTGA
AATCTATGATTTGTAAACGAAGGGTTATCCCTATGGTTGTATTAGTATGG
CTTGTTTCTATCATTTTACCGTTGTTGGAGTTGACGTACCGATATTCACC
CAGAAAGCAATATTATCAACAACTTCATGTGACTTTTACAATAGTTGGTT
TTTGGATTCTACCAGGAATTTTGTTATGTGTCCAGTATATCGCCATGGTG
ATTCTGATATATGGCTTCCAACAAAAACATCGGATTGACATTAAAAGTAT
TTTCCTCAGGTACAAAGCATTTGTGATTTACCTATGCATGTTTCTATCGT
TCCTGATCCTATGTTCACCTCATTTTGCAGTTCGTATCATGGTAGCCTTT
ACTAATAAATTCCCTCATATATCTCACGATTTATTACGTGGAATTACAAT
TCTCAGATATCTCCCATCTCTTCTTAATCCATTGATCTACGCCTTCTtca
aaaaggattttcagagatctttttccaaaactttgaaAGACATTAAACAA
CCTTCTTTTCGATTAAAACTTTTACCCTGGTCAAAAAATACTTCACCCGT
CGAATCGATGAAGCAATTGAACAGTGAAGTGATTTATGACTCACCAAGTT
TATTGAGAACTGATGCACATGGCAACGACAGCTATACAATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008802-exon-sc0000087-1491911889:139979..141654 | TCONS_00008802-exon-sc0000087-1491911889:139979..141654 | Clytia hemisphaerica | exon |
| TCONS_00008802-exon-sc0000087-1510915933:139979..141654 | TCONS_00008802-exon-sc0000087-1510915933:139979..141654 | Clytia hemisphaerica | exon |
| TCONS_00008802-exon-sc0000087-1575043694:139979..141654 | TCONS_00008802-exon-sc0000087-1575043694:139979..141654 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:139979..141654 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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