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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008801 ID=TCONS_00008801|Name=TCONS_00008801|organism=Clytia hemisphaerica|type=transcript|length=1506bp
AGCTGGCTTTACTGGTATACAAAtcattcatcaaaatttacATACAAGAA
AGATTAGCGAACCAGTGACCCAAGCAACAGCGATATTTGGCGGAAATATC
AGCTTTGCACTATACGTTGtcaattcaatttttgttttttatcattAATT
AACAATTGTACGGACACTCGTGAAAAATGAACAACTCGTCGACTCCAAAC
ATCACCACCCTTATCACAAAATCAACCGCCACCAACTGCCATGCCCATTT
CTATATTTGGTATTACCTTCCGATGCTTATACTGGGTATAATGATCACTG
TAattaatttcttcattttcatcttcataaaGACTTCACGAACATTAAAA
CGAAACGCTGGAAATTTCATTCTGATGGGTTTATCTTTAATAGATACTTT
CACTGGATTGCATGCCATCTTACACTCGACTCCAGTCTTCTATTTTCTTA
ATACCAACAGCTGTGGTGGAGAAATTTACAAATCGTATCGAAATGCTGAA
TACTTAATCAGTAAAATCTGCATGTTAGGATCAATTGGTCATCTACTTCT
GCTTGCTGGTGAAAGAATGATTCGCTTATTCAGACCATTGAGATTTAAAT
CTATCATTGTTGGCAAAAAGGTCATCCCTATTGTTCTATTAGTTTGGTTT
ATCTCAATACTTTTACCAATCATTGAATTGACATACAGATTCAGTAAAGA
CTTCAAGCTTTACCAACGTATCCATGTTTCAGTAACCATCATTGGTTTCT
GGATATTTCCACTGGTTCTCCTATGCATCCAATACATTGCAATGTTGATT
TTGATTTACCACTTCCAACGAAAACGTTCCAGAGATATGAAATCAACACT
AATCAAATACAAAGCTTTCTTTATCTACTTGAGCATGTTCCTATCATTTC
TGACTTTATCATCtcctcattttgctatccgaatTATTATAGCTTTTGTA
AGAAAAATCGGCCGTATCCCCATCAAGATTTTGGGAACCATTGCATTACT
ACGCTACGTACCATCACTCATAAATCCTTTCATCTACGCTATGCTCAAAG
atgattttcaaaaagctttctcCAGACGTTTCCAACGCTCCTTTCCACCC
AAAAGTGATGTCAGTGAGGGCGGCTGGACTATGTTACGCCTTAGCACCCG
CAAGTCATTCGTTCAAAAGCAACCAACCGTGATCATAGAGTCTGAGCAGC
TGAAAGCGGTTGATCGATTGGAACTACTACCGATGACGGAGCTTCCTCCA
CCATGTTTGACTCAAAGAAATGTAGATTCTTGTTATATTCAATTATAAGA
CAATGCAATACGCCACATGAAGGTGGAAGAATCAGTTTACTCAGCAATCT
AAACAGTTTAATAACTCTCTACATCTACATCGAAAAATCTCATTCGGATC
AAAACACAAGTTATCTCTTTCTTCAAGATTTTAAAATCATCAATTCACTC
ATTCTTCTTGACCATACTCTACAGACATAAATGAAACAAACACTTGAACA
TAGGTG Run BLAST on NCBI protein sequence of TCONS_00008801-protein >TCONS_00008801-protein ID=TCONS_00008801-protein|Name=TCONS_00008801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MNNSSTPNITTLITKSTATNCHAHFYIWYYLPMLILGIMITVINFFIFIF
IKTSRTLKRNAGNFILMGLSLIDTFTGLHAILHSTPVFYFLNTNSCGGEI
YKSYRNAEYLISKICMLGSIGHLLLLAGERMIRLFRPLRFKSIIVGKKVI
PIVLLVWFISILLPIIELTYRFSKDFKLYQRIHVSVTIIGFWIFPLVLLC
IQYIAMLILIYHFQRKRSRDMKSTLIKYKAFFIYLSMFLSFLTLSSPHFA
IRIIIAFVRKIGRIPIKILGTIALLRYVPSLINPFIYAMLKDDFQKAFSR
RFQRSFPPKSDVSEGGWTMLRLSTRKSFVQKQPTVIIESEQLKAVDRLEL
LPMTELPPPCLTQRNVDSCYIQL Run BLAST on NCBI transcript from alignment at sc0000087:132825..134330 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008801 ID=TCONS_00008801|Name=TCONS_00008801|organism=Clytia hemisphaerica|type=transcript|length=1506bp|location=Sequence derived from alignment at sc0000087:132825..134330 (Clytia hemisphaerica)
CACCTATGTTCAAGTGTTTGTTTCATTTATGTCTGTAGAGTATGGTCAAG
AAGAATGAGTGAATTGATGATTTTAAAATCTTGAAGAAAGAGATAACTTG
TGTTTTGATCCGAATGAGATTTTTCGATGTAGATGTAGAGAGTTATTAAA
CTGTTTAGATTGCTGAGTAAACTGATTCTTCCACCTTCATGTGGCGTATT
GCATTGTCTTATAATTGAATATAACAAGAATCTACATTTCTTTGAGTCAA
ACATGGTGGAGGAAGCTCCGTCATCGGTAGTAGTTCCAATCGATCAACCG
CTTTCAGCTGCTCAGACTCTATGATCACGGTTGGTTGCTTTTGAACGAAT
GACTTGCGGGTGCTAAGGCGTAACATAGTCCAGCCGCCCTCACTGACATC
ACTTTTGGGTGGAAAGGAGCGTTGGAAACGTCTGgagaaagctttttgaa
aatcatCTTTGAGCATAGCGTAGATGAAAGGATTTATGAGTGATGGTACG
TAGCGTAGTAATGCAATGGTTCCCAAAATCTTGATGGGGATACGGCCGAT
TTTTCTTACAAAAGCTATAATAattcggatagcaaaatgaggaGATGATA
AAGTCAGAAATGATAGGAACATGCTCAAGTAGATAAAGAAAGCTTTGTAT
TTGATTAGTGTTGATTTCATATCTCTGGAACGTTTTCGTTGGAAGTGGTA
AATCAAAATCAACATTGCAATGTATTGGATGCATAGGAGAACCAGTGGAA
ATATCCAGAAACCAATGATGGTTACTGAAACATGGATACGTTGGTAAAGC
TTGAAGTCTTTACTGAATCTGTATGTCAATTCAATGATTGGTAAAAGTAT
TGAGATAAACCAAACTAATAGAACAATAGGGATGACCTTTTTGCCAACAA
TGATAGATTTAAATCTCAATGGTCTGAATAAGCGAATCATTCTTTCACCA
GCAAGCAGAAGTAGATGACCAATTGATCCTAACATGCAGATTTTACTGAT
TAAGTATTCAGCATTTCGATACGATTTGTAAATTTCTCCACCACAGCTGT
TGGTATTAAGAAAATAGAAGACTGGAGTCGAGTGTAAGATGGCATGCAAT
CCAGTGAAAGTATCTATTAAAGATAAACCCATCAGAATGAAATTTCCAGC
GTTTCGTTTTAATGTTCGTGAAGTCtttatgaagatgaaaatgaagaaat
taatTACAGTGATCATTATACCCAGTATAAGCATCGGAAGGTAATACCAA
ATATAGAAATGGGCATGGCAGTTGGTGGCGGTTGATTTTGTGATAAGGGT
GGTGATGTTTGGAGTCGACGAGTTGTTCATTTTTCACGAGTGTCCGTACA
ATTGTTAATTaatgataaaaaacaaaaattgaattgaCAACGTATAGTGC
AAAGCTGATATTTCCGCCAAATATCGCTGTTGCTTGGGTCACTGGTTCGC
TAATCTTTCTTGTATgtaaattttgatgaatgaTTTGTATACCAGTAAAG
CCAGCT Coding sequence (CDS) from alignment at sc0000087:132825..134330 >TCONS_00008801 ID=TCONS_00008801|Name=TCONS_00008801|organism=Clytia hemisphaerica|type=CDS|length=1122bp|location=Sequence derived from alignment at sc0000087:132825..134330 (Clytia hemisphaerica)
TTATAATTGAATATAACAAGAATCTACATTTCTTTGAGTCAAACATGGTG
GAGGAAGCTCCGTCATCGGTAGTAGTTCCAATCGATCAACCGCTTTCAGC
TGCTCAGACTCTATGATCACGGTTGGTTGCTTTTGAACGAATGACTTGCG
GGTGCTAAGGCGTAACATAGTCCAGCCGCCCTCACTGACATCACTTTTGG
GTGGAAAGGAGCGTTGGAAACGTCTGgagaaagctttttgaaaatcatCT
TTGAGCATAGCGTAGATGAAAGGATTTATGAGTGATGGTACGTAGCGTAG
TAATGCAATGGTTCCCAAAATCTTGATGGGGATACGGCCGATTTTTCTTA
CAAAAGCTATAATAattcggatagcaaaatgaggaGATGATAAAGTCAGA
AATGATAGGAACATGCTCAAGTAGATAAAGAAAGCTTTGTATTTGATTAG
TGTTGATTTCATATCTCTGGAACGTTTTCGTTGGAAGTGGTAAATCAAAA
TCAACATTGCAATGTATTGGATGCATAGGAGAACCAGTGGAAATATCCAG
AAACCAATGATGGTTACTGAAACATGGATACGTTGGTAAAGCTTGAAGTC
TTTACTGAATCTGTATGTCAATTCAATGATTGGTAAAAGTATTGAGATAA
ACCAAACTAATAGAACAATAGGGATGACCTTTTTGCCAACAATGATAGAT
TTAAATCTCAATGGTCTGAATAAGCGAATCATTCTTTCACCAGCAAGCAG
AAGTAGATGACCAATTGATCCTAACATGCAGATTTTACTGATTAAGTATT
CAGCATTTCGATACGATTTGTAAATTTCTCCACCACAGCTGTTGGTATTA
AGAAAATAGAAGACTGGAGTCGAGTGTAAGATGGCATGCAATCCAGTGAA
AGTATCTATTAAAGATAAACCCATCAGAATGAAATTTCCAGCGTTTCGTT
TTAATGTTCGTGAAGTCtttatgaagatgaaaatgaagaaattaatTACA
GTGATCATTATACCCAGTATAAGCATCGGAAGGTAATACCAAATATAGAA
ATGGGCATGGCAGTTGGTGGCGGTTGATTTTGTGATAAGGGTGGTGATGT
TTGGAGTCGACGAGTTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008801-exon-sc0000087-1491911889:132825..134330 | TCONS_00008801-exon-sc0000087-1491911889:132825..134330 | Clytia hemisphaerica | exon |
| TCONS_00008801-exon-sc0000087-1510915933:132825..134330 | TCONS_00008801-exon-sc0000087-1510915933:132825..134330 | Clytia hemisphaerica | exon |
| TCONS_00008801-exon-sc0000087-1575043694:132825..134330 | TCONS_00008801-exon-sc0000087-1575043694:132825..134330 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:132825..134330 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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