TCONS_00008798 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008798
Unique NameTCONS_00008798
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008798 ID=TCONS_00008798|Name=TCONS_00008798|organism=Clytia hemisphaerica|type=transcript|length=454bp
GGACCATTTCAAGTTGATCGCAAAGTGATTGATTTGATATAGGATTCCAA
ACTGGTGAAGCATACGATGCGATTGGTCGGACATAAATGTTGAACGCTTT
CTCCTTTATTTTACGAGAACATCCTCGCAAATTTCTTTGTAAGAACGATC
GTTTTTGGTTGGCTTTCTTACAAATAGCATCGATGTGTGTATTCCACTTA
AGCTTCTTGTTTAAAGTCACCCCGAGATATTTGGCATTTGATACTTTCTC
GAGGTTCTCGCTATGGATTGAATAAACAGATTCTATGGGTTTGGTTTTGT
TCGTGATGGTGAGATGCTTGCATTTTTGTGGGTGGAATTCCATGTCCGAG
AGTGTTTCCCATTCTTGTAGAGCTGTAAGATCCTCTTGGAGAATGAGAGG
GTCAGCCATGCTTTCTATGGTACGATATAAATAAGCATCATCAGCGAATA
AACa
Run BLAST on NCBI

protein sequence of TCONS_00008798-protein

>TCONS_00008798-protein ID=TCONS_00008798-protein|Name=TCONS_00008798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
CLFADDAYLYRTIESMADPLILQEDLTALQEWETLSDMEFHPQKCKHLTI
TNKTKPIESVYSIHSENLEKVSNAKYLGVTLNKKLKWNTHIDAICKKANQ
KRSFLQRNLRGCSRKIKEKAFNIYVRPIASYASPVWNPISNQSLCDQLEM
V
Run BLAST on NCBI

transcript from alignment at sc0000087:85263..85716

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008798 ID=TCONS_00008798|Name=TCONS_00008798|organism=Clytia hemisphaerica|type=transcript|length=454bp|location=Sequence derived from alignment at sc0000087:85263..85716 (Clytia hemisphaerica)
tGTTTATTCGCTGATGATGCTTATTTATATCGTACCATAGAAAGCATGGC
TGACCCTCTCATTCTCCAAGAGGATCTTACAGCTCTACAAGAATGGGAAA
CACTCTCGGACATGGAATTCCACCCACAAAAATGCAAGCATCTCACCATC
ACGAACAAAACCAAACCCATAGAATCTGTTTATTCAATCCATAGCGAGAA
CCTCGAGAAAGTATCAAATGCCAAATATCTCGGGGTGACTTTAAACAAGA
AGCTTAAGTGGAATACACACATCGATGCTATTTGTAAGAAAGCCAACCAA
AAACGATCGTTCTTACAAAGAAATTTGCGAGGATGTTCTCGTAAAATAAA
GGAGAAAGCGTTCAACATTTATGTCCGACCAATCGCATCGTATGCTTCAC
CAGTTTGGAATCCTATATCAAATCAATCACTTTGCGATCAACTTGAAATG
GTCC

Coding sequence (CDS) from alignment at sc0000087:85263..85716

>TCONS_00008798 ID=TCONS_00008798|Name=TCONS_00008798|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0000087:85263..85716 (Clytia hemisphaerica)
tGTTTATTCGCTGATGATGCTTATTTATATCGTACCATAGAAAGCATGGC
TGACCCTCTCATTCTCCAAGAGGATCTTACAGCTCTACAAGAATGGGAAA
CACTCTCGGACATGGAATTCCACCCACAAAAATGCAAGCATCTCACCATC
ACGAACAAAACCAAACCCATAGAATCTGTTTATTCAATCCATAGCGAGAA
CCTCGAGAAAGTATCAAATGCCAAATATCTCGGGGTGACTTTAAACAAGA
AGCTTAAGTGGAATACACACATCGATGCTATTTGTAAGAAAGCCAACCAA
AAACGATCGTTCTTACAAAGAAATTTGCGAGGATGTTCTCGTAAAATAAA
GGAGAAAGCGTTCAACATTTATGTCCGACCAATCGCATCGTATGCTTCAC
CAGTTTGGAATCCTATATCAAATCAATCACTTTGCGATCAACTTGAAATG
GTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004933XLOC_004933Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008798-exon-sc0000087-1491911889:85263..85716TCONS_00008798-exon-sc0000087-1491911889:85263..85716Clytia hemisphaericaexon
TCONS_00008798-exon-sc0000087-1510915933:85263..85716TCONS_00008798-exon-sc0000087-1510915933:85263..85716Clytia hemisphaericaexon
TCONS_00008798-exon-sc0000087-1575043694:85263..85716TCONS_00008798-exon-sc0000087-1575043694:85263..85716Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008798-proteinTCONS_00008798-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:85263..85716 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.747199	0	0.731482	0.0158094	1.40261	0.745558	1.20512	0.93669	0.666007	0.497581	0	0.23717	0.46515	0.273762	0.225582	0.308415	0.0617344	0.119846	0.738932	0.32216	0.0836177	0	0	0	0.517957	0.340229	0.146964	0.0483602	0.182798	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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