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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008797 ID=TCONS_00008797|Name=TCONS_00008797|organism=Clytia hemisphaerica|type=transcript|length=1988bp
CGGATATCCGATTGGACATAAGaaggcatatcattaatgtatATCAAAAA
TAGCAGTGGCCCAAGCACGGTGCCTTGTGGTACTCCTGACAAAACATTGg
cctttttcgaatgtttcccATTTAAGATAACCTGTTGAGTGCGATTACTA
AGGAAAGCCTCGATCCATTTCAGTGTGGAGCCACGAATACCATAGTGAGA
AACTTTACGACAAACCTTAAAATGGTTAACCTTATCGAAGGCTTTGCTAA
AGTCTAGTAATATTGAATCAGTTTGTTGTTTGTCGTTTAGGTTTTTAGCA
AAGTCATTTACAGTGGTCAATAGTTGGCTTACACATGATCGGTTTTCTCT
AAATCCATGCTGGTAATCACTTAACACTTTATTCTTGTTCAAATAGGTCA
TGATGTTACTGTATATGATATGTTCTGTACATTTACAACAAATCGATGTG
AGAGACACAGGCCGGTAGTTTTCAGCCTGATTTTTGTCCTTGTTTCCACC
TTTATAAACAGGAACAATAAACGCGTGTAACCAATCTGTCGGAAGTGATC
CTTTGCTAAGTGATGCGTTAAATATCGATGTTAGGGCAGGTGATATTTCG
CTAGCAAATTCCTTCAGAAATCTTGCTGAAATATTATCAGGCCCTGTTGC
TTTCTGAGGGTCAAGCTATGACAACAGAGAGCGGACACcgttttctttga
tttcaataTCGGGCAATGTATTTTCAACAATTGGCGATCTGATGGGTGGT
ATATCTTTGTTGGGCTTAGAGAAAACGCTGCAATACTGCTCATTAAGGAT
ATCAGCTTTCTTTTGGTCATCAATGATGATACTCCCATTCTTTTTTAATG
GGGCAACTGTGATATTGTCTTTTTGTTTGTACTTAATATACTTATAGAAT
CGCTTGGTATCGGTAGATTCTAAGACGTTTTCCTTGATGTAGTTGTCATG
TGCTTTACGACATTGTTTTCTGCACTCATTAACGACGTGTCGGAATCTGC
TCCAATCCGATTCAAGTCTTGTTCGTTTTGCACGCTTGTAGAGACGTTTC
TTTCTGCGCAACAATCTCCTTCACTTTCGATTTACCCATGGCTGACTGAA
TCTTTGACGTAAAGTTTTGGTTGGTATCTTATTCATAGTTTTGCTGACGA
TGTCTTTGAATTCACTCCACATCGTGTCGATAGCAAAAGTTCCATTCTCA
TGTTTAGCACAAAATAGTGTACATGCTGTTTTCAGTTCTTCTTTTAATAA
TGGGATGTTTGCTCTACTCCATACATGCACTGTTCTTTTAACTGCACGAT
GCCTGATGGGATGACACATAACGTCAATTACACCAATAGCAGTGTGATCA
CTTATCCCTGGGAAATCCTTGACATCCGATAGTAGTGAATAGTTGTTTGT
TAGTATTATATCTAGGGTATTGTTATTTCTAGTTGGAAAGTCAATGATTT
GGTCAAGGTTGCAGTCATAAACCATTTTAATTGCTGTTTCGTTGATTTGT
TTTGAGTAATCGTGACTGACAATAGAGTTTGTTGACCAGTCGATATCAGG
TAGATTCCAGTCACCCCCAATCCAGATTGGACTTGTCTGATACTTTGCAA
CAATTGATCTTATGTCCCTTGATAAATTTTCAACCTATGGCAATTTTGTA
CTGGTGATCGGTAGGCAGAGACTATCACAACTggttttttaaaagtttca
attttgacAGCTATACACTCAGTGTCTTTGGAATTGAAAACTTCTTCGGC
GATAAGGGTAAGTCTGGTCATTATAACGACTCCACCCCAACCATCTTCAC
GATCTCTCCGGAAAGCAGTGTAGCCTGGTGGAACAAATTCAGATTCACCA
ATTGAAGGGTCAATATGGGTTTCTGAGCCAATGATTATGTCAGGATTAAT
TTTCAACACCTCTTTGTGAAAATGTTCCTTTTTACCCCAGACACTTTGAA
AGTTTATATTCATCATTCGGAGGTTTTTTGCTTTAACT Run BLAST on NCBI protein sequence of TCONS_00008797-protein >TCONS_00008797-protein ID=TCONS_00008797-protein|Name=TCONS_00008797-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MVYDCNLDQIIDFPTRNNNTLDIILTNNYSLLSDVKDFPGISDHTAIGVI
DVMCHPIRHRAVKRTVHVWSRANIPLLKEELKTACTLFCAKHENGTFAID
TMWSEFKDIVSKTMNKIPTKTLRQRFSQPWVNRK Run BLAST on NCBI transcript from alignment at sc0000087:81597..83584 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008797 ID=TCONS_00008797|Name=TCONS_00008797|organism=Clytia hemisphaerica|type=transcript|length=1988bp|location=Sequence derived from alignment at sc0000087:81597..83584 (Clytia hemisphaerica)
AGTTAAAGCAAAAAACCTCCGAATGATGAATATAAACTTTCAAAGTGTCT
GGGGTAAAAAGGAACATTTTCACAAAGAGGTGTTGAAAATTAATCCTGAC
ATAATCATTGGCTCAGAAACCCATATTGACCCTTCAATTGGTGAATCTGA
ATTTGTTCCACCAGGCTACACTGCTTTCCGGAGAGATCGTGAAGATGGTT
GGGGTGGAGTCGTTATAATGACCAGACTTACCCTTATCGCCGAAGAAGTT
TTCAATTCCAAAGACACTGAGTGTATAGCTgtcaaaattgaaacttttaa
aaaaccAGTTGTGATAGTCTCTGCCTACCGATCACCAGTACAAAATTGCC
ATAGGTTGAAAATTTATCAAGGGACATAAGATCAATTGTTGCAAAGTATC
AGACAAGTCCAATCTGGATTGGGGGTGACTGGAATCTACCTGATATCGAC
TGGTCAACAAACTCTATTGTCAGTCACGATTACTCAAAACAAATCAACGA
AACAGCAATTAAAATGGTTTATGACTGCAACCTTGACCAAATCATTGACT
TTCCAACTAGAAATAACAATACCCTAGATATAATACTAACAAACAACTAT
TCACTACTATCGGATGTCAAGGATTTCCCAGGGATAAGTGATCACACTGC
TATTGGTGTAATTGACGTTATGTGTCATCCCATCAGGCATCGTGCAGTTA
AAAGAACAGTGCATGTATGGAGTAGAGCAAACATCCCATTATTAAAAGAA
GAACTGAAAACAGCATGTACACTATTTTGTGCTAAACATGAGAATGGAAC
TTTTGCTATCGACACGATGTGGAGTGAATTCAAAGACATCGTCAGCAAAA
CTATGAATAAGATACCAACCAAAACTTTACGTCAAAGATTCAGTCAGCCA
TGGGTAAATCGAAAGTGAAGGAGATTGTTGCGCAGAAAGAAACGTCTCTA
CAAGCGTGCAAAACGAACAAGACTTGAATCGGATTGGAGCAGATTCCGAC
ACGTCGTTAATGAGTGCAGAAAACAATGTCGTAAAGCACATGACAACTAC
ATCAAGGAAAACGTCTTAGAATCTACCGATACCAAGCGATTCTATAAGTA
TATTAAGTACAAACAAAAAGACAATATCACAGTTGCCCCATTAAAAAAGA
ATGGGAGTATCATCATTGATGACCAAAAGAAAGCTGATATCCTTAATGAG
CAGTATTGCAGCGTTTTCTCTAAGCCCAACAAAGATATACCACCCATCAG
ATCGCCAATTGTTGAAAATACATTGCCCGAtattgaaatcaaagaaaacg
GTGTCCGCTCTCTGTTGTCATAGCTTGACCCTCAGAAAGCAACAGGGCCT
GATAATATTTCAGCAAGATTTCTGAAGGAATTTGCTAGCGAAATATCACC
TGCCCTAACATCGATATTTAACGCATCACTTAGCAAAGGATCACTTCCGA
CAGATTGGTTACACGCGTTTATTGTTCCTGTTTATAAAGGTGGAAACAAG
GACAAAAATCAGGCTGAAAACTACCGGCCTGTGTCTCTCACATCGATTTG
TTGTAAATGTACAGAACATATCATATACAGTAACATCATGACCTATTTGA
ACAAGAATAAAGTGTTAAGTGATTACCAGCATGGATTTAGAGAAAACCGA
TCATGTGTAAGCCAACTATTGACCACTGTAAATGACTTTGCTAAAAACCT
AAACGACAAACAACAAACTGATTCAATATTACTAGACTTTAGCAAAGCCT
TCGATAAGGTTAACCATTTTAAGGTTTGTCGTAAAGTTTCTCACTATGGT
ATTCGTGGCTCCACACTGAAATGGATCGAGGCTTTCCTTAGTAATCGCAC
TCAACAGGTTATCTTAAATgggaaacattcgaaaaaggcCAATGTTTTGT
CAGGAGTACCACAAGGCACCGTGCTTGGGCCACTGCTATTTTTGATatac
attaatgatatgccttCTTATGTCCAATCGGATATCCG Coding sequence (CDS) from alignment at sc0000087:81597..83584 >TCONS_00008797 ID=TCONS_00008797|Name=TCONS_00008797|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0000087:81597..83584 (Clytia hemisphaerica)
ATGGTTTATGACTGCAACCTTGACCAAATCATTGACTTTCCAACTAGAAA
TAACAATACCCTAGATATAATACTAACAAACAACTATTCACTACTATCGG
ATGTCAAGGATTTCCCAGGGATAAGTGATCACACTGCTATTGGTGTAATT
GACGTTATGTGTCATCCCATCAGGCATCGTGCAGTTAAAAGAACAGTGCA
TGTATGGAGTAGAGCAAACATCCCATTATTAAAAGAAGAACTGAAAACAG
CATGTACACTATTTTGTGCTAAACATGAGAATGGAACTTTTGCTATCGAC
ACGATGTGGAGTGAATTCAAAGACATCGTCAGCAAAACTATGAATAAGAT
ACCAACCAAAACTTTACGTCAAAGATTCAGTCAGCCATGGGTAAATCGAA
AGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008797-exon-sc0000087-1491911889:81597..83584 | TCONS_00008797-exon-sc0000087-1491911889:81597..83584 | Clytia hemisphaerica | exon |
| TCONS_00008797-exon-sc0000087-1510915933:81597..83584 | TCONS_00008797-exon-sc0000087-1510915933:81597..83584 | Clytia hemisphaerica | exon |
| TCONS_00008797-exon-sc0000087-1575043694:81597..83584 | TCONS_00008797-exon-sc0000087-1575043694:81597..83584 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:81597..83584 . |
Blast
BLAST of TCONS_00008797 vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.341e-20 Identity = 75/308 (24.35%), Postives = 146/308 (47.40%), Query Frame = -1
Query: 6 KYIKYKQKDNITVAPLKKNGSIIIDDQKKADILNEQYCSVFSKPNKDIPPIRSPIVENTLPDIEIKE----------NGVRSLLS*LDPQKATGPDNISARFLKEFASEISPALTSIFNASLSKGSLPTDWLHAFIVPVYKGGNKDKNQAENYRPVSLTSICCKCTEHIIYSNIMTYLNKNKVLSDYQHGFRENRSCVSQLLTTVNDFAKNLNDKQQTDSILL--DFSKAFDKVNHFKVCRKVSHYGIRGSTLKWIEAFLSNRTQQVILNGKHSKKANVLSGVPQGTVLGPLLFLIYINDMPSYVQSD 893
+ IK K++ N G I D + + E Y +++ +++ + + + TLP + +E + + ++++ L +K+ GPD +A F + + E+ P L +F + +G LP + A I+ + K G +D + EN+RP+SL +I K I+ + I ++ K ++ Q GF + ++N +++N + + +++ D KAFDK+ + + ++ GI G LK I A T +ILNG+ + + +G QG L PLLF I + + ++ +
Sbjct: 379 RLIKKKREKNQIDTIKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPG-RDTTKKENFRPISLMNIDAKILNKILANRIQQHIKK--LIHHDQVGFIPGMQGWFNIRKSIN-VIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQE 682
The following BLAST results are available for this feature:
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