TCONS_00008792 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008792
Unique NameTCONS_00008792
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008792 ID=TCONS_00008792|Name=TCONS_00008792|organism=Clytia hemisphaerica|type=transcript|length=1487bp
CTGAACTTGTCAGTTTTAAAGACATTGACGAATCGAGGTTCATTCATTAT
GAGGCTGTCAACAAACGGggtttggagaaattttggatTGGTTACACAGA
TGTTGTTAACGAAGGATCATTCAAATGGACAGACCATACAGAGTTTGGTT
TTACTCTTTTCGCTGCTGGAGAACCGAACAACGCCGGGAATGAACACTGT
GTTTACCAACGAAAAACGGGATATTGGAACGATGCTAACTGCGAACTAAA
GGCTGGATATGTTTGCAAGAAACCATATTTCAATCCTAACCGTGGTGGTA
AGAGCTATCGATTCTTTAAAAGACTTTCAACGTGGGATATTGCTCGACAA
CTTTGTGAACAACTTAAAGGAAGTCTAGTAACTATTGACTCAGAAGCTGA
AAATGAATTTCTCGCTCGAGAGAGTGGAAACAGAGGATTTAGTGGAACAT
GGATTGGTTATAATGACAAAGATGTTGAAGGAACCTTCAAATGGGTGTCT
GGTGCAACCACGTGTTACAAAAAATGGTTATCAGGGCAACCATCGTCACC
AGATTGTGTATTTTTGAACCCATTCACCAAGTATTGGAGTACCTCGACGT
GCGGATTTACAAGACCTTATATTtgtgaattcaatttttaaatctttttt
taaaatttgtttagagaacgacaaaccctaacccttaccctaacaaagaa
cgacatatttagCCATCCCAAACCCCAACCTTGTGTTTAATGACCAGGGG
TTTAAAGAACGATAAAATATGCATGCGcaagtctctatttgggtgagctg
gaaacattacaCGAACGGATTTAAAAATGCGTGTTAGAAAAGCTAGACGA
TACGGTTGGGTCCTGGTCATTCGTTCCTGTAAGTTAGTTTGATTGGAGAA
TAACGTACCATTTGTAAGCTTTAGATGTTACAATTCTTTTCCATTAGCTC
AATTCATCATTTCCTTATTTTTGCAgtataaagtaaaaaaagaaattagt
caAATAGAATCAAAAAATCATAGAAAAGAACTTTGTTTGCTTGGTCCgat
tgctctgtttgagggtaatattagagattgaactctagcccctCGGGCTT
TAAGCTCAATGGTCAAAAGTCGCAATGttcgggggtaaatttccaaaaaa
tgttcaGCACCCAcccatattaaatttttttgccaattttccttGATTTA
TAGTAATTCGTCACTGCACCTGTTAATATCAAAGTTGTTCACAAagaaaa
aagtatattttaagTTAATGACGCCTGGATTTCTATTCTAAACACTTTTC
AATCACGTAAACAGAgctactttttgactttttttgacaaTCGCTCTGGA
AAAGACTGCCGAAAGTTCTCTTTGATCTTTTGTTATCCACAGGAAACTAT
TTTGTGCGAACACATGGGACAAAGCTAGGACAAAGGGGTGTACGCACGAA
GAAGAagcattttgattttaataaatTCAAACCAGAA
Run BLAST on NCBI

protein sequence of TCONS_00008792-protein

>TCONS_00008792-protein ID=TCONS_00008792-protein|Name=TCONS_00008792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
ELVSFKDIDESRFIHYEAVNKRGLEKFWIGYTDVVNEGSFKWTDHTEFGF
TLFAAGEPNNAGNEHCVYQRKTGYWNDANCELKAGYVCKKPYFNPNRGGK
SYRFFKRLSTWDIARQLCEQLKGSLVTIDSEAENEFLARESGNRGFSGTW
IGYNDKDVEGTFKWVSGATTCYKKWLSGQPSSPDCVFLNPFTKYWSTSTC
GFTRPYICEFNF
Run BLAST on NCBI

transcript from alignment at sc0000087:583662..594103-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008792 ID=TCONS_00008792|Name=TCONS_00008792|organism=Clytia hemisphaerica|type=transcript|length=10442bp|location=Sequence derived from alignment at sc0000087:583662..594103- (Clytia hemisphaerica)
CTGAACTTGTCAGTTTTAAAGACATTGACGAATCGAGGTTCATTCATTAC
GAAGCTGTCAACAGGTAAGTTGTGAGATAATTTTCTCAATTTCACATACA
CCCCTGTCTCGGTGACGTGATTTCTGATATTTTCAACAGTAGCAACATAC
TTTGAGAAAGTACAGCTTACAAACTTTCCAAGAGAAATCACTTAATTCAA
AATTTCTTATTACTTTAACATCTCTAATCCTGACAGTGCAGTAATTATTC
ATCCGAATAAAATATCAATATTTTGACCCATTCTCTTCATTTTAGACGGG
GTTTGGAGAAATTTTGGATTGGTTACACAGACGTTGTTAACGAAGGATCA
TTCAAATGGACAGACCATACAGAGCACGGTTTCACTCTTTTCGCTGCTGG
AGAACCGAACAACGCCGGTAATGAACACTGTGTTTACCAACGAAAAACGG
GATATTGGAACGATGCTAACTGCGGACTAAAGGTCAGGCGTTGTTTACTC
TACTCCCAGCTGGCACGCAACGTCTTTTCAACGTTTATTTGACGTTCACA
ACGTCCATATAACGTTAGTGTTAGATGAACGTCGAGACAACGTCGTGTGC
CAGCCGGGCTACTTCCTTTAAAATTGGCTAACAGATCTTCCCCAATAAGA
AGTATGCCCTGTAATTCAACTCAAACTCGACACGTTAATCTATCTTAACT
TCTCTGAAATTTCGGAAAATCTTTGGAAATTTGATCTGTTTAGCAATTAA
AGCTTCTCAGCCATAGAAATAAGTGTTATGGTGTCTTTATTTCACCCTCT
AAAATATTCTCACTGGGTAAGGCAGGAGTGCTCGGGGGGGGGGGGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGTACTAGGGTTGCGAACT
GACGGGGTGTACCGCCCGAATTTCGACCCTTGGACCCTTACCGGGACTAA
AAAGGAAAAAAGAAAGGAAATTTTTGTGAATTTTACGACCCTTATTGGAA
CTAATTTGACTCCCGGGCAGGAGTGTAGATGTCTGAAAAAGAATCTACCG
CATTACCGTAATTTGGTCTAATGTCGACATCCCTCGTCTAAATTTGACAC
CCTTTTCTAGAGCTGAAGATAATAGAAAGGTTGAAACTATTTTTCTTTTT
TTAGTGGTAAGAGAGGAAAAATTCTTTTTCAATCACCGTTTCCAACTTTC
ATATTATTCCTATCTCTAAAGAAGGGTGTCGGAAATAAAAGAAGGATGTC
GAGATTAGACCAACTTACGGTACTTTATTTATCATTTGTTGCTCCGCCAA
ACTTTGGATCCATCACAAATTTAGGAATCCACACTGACTTTGTAAGCGAT
AAAAATGCTTAATAAAACACAAAACACACAAATGAAACATTTTCCACTCG
AATTAAATAGGTTGGATATGTTTGTAAGAAACCATATTTCAATCCTAACG
GTGGTGGAAAGAGCTATCGATTCTTTAAAGAATGGAGGAATTGGGATATC
GCACAACAAACATGTGGACATTTTGGGGGAAATCTGGTGACTATCGATTC
AGAAGCGGAAAATAAATTCCTCTCTCAAGAAAGTTTAATAAGGTAGGTGA
ATTCATTGTTAACTGAATATTGCTAATTCTTTTAGAACAGAATGCAGAGG
AAATTTTTCTGATTTTTGTTATGCCAATGGGATTTCGCACCATCCCCTGA
ACTAATTTTCTGCTGAGGTTAAATTCACCTTTAACTTCCATTTTGTTTAT
CTTTACTCCCCAATTTCGTCATAAACCGCCACTGTGAGATCATACATATT
CCATTTAAAAAGTTGGTAAAATTGGTGATGTCTTCCTATAGAATTAAGAA
TTAAGAATACTATAGTATATTACCGTGGTAATTCAAAGGAACATATATCC
TCAAACCCAATAATTACATTACACCTTCGATGATGGATCACTGAACACAC
GACTTAGAAATATGGAATTGGCAACTGGCCCGTTTGCATCGTAAAATCAT
TATTGCCCTTGACTCTCGAGTGTGAGATTATATTCAATTGCGAAACTGCG
AATATTATGATCTCTAAATTGGTCTTTAAGTTCAAAAACACTTTTGCTTT
CCTTTTCCAGAGGTTTAAGTGCAGTTTGGATTGGTTATAATGACAAAGAT
GTGGAAGGAACCTTCAATTGGGTGTCTGGCGCAACAACATGCTACAAAAA
ATGGTTACCAGGACAACCGTCACCTGAAGACTGTGCAGTTCTGGCTCCAT
TCGCACAGGCTTGGGTTACAACGACGTGCGCACCTACAAGAGCTTATATT
TGCGAATTTGACTTTTAGGCTATTTTAGGATTTGTTTAGATTTCTTAATT
AAGTACAATGCTGGCCATAATATTTGGAATAAAAGGGAAATTCCCTCAAA
ATCTTAAAAACGCAAGTGATTATTAAGTGCCATAAATTAGGGCTGGAAAG
TAGAGTTTTAACTCTGAGTTTTAACATTAGACTTAAAGACTTAGGACCTT
AGGATCTCAGGATCCAAAAGCTCAGAAAAGTTCCAACGAGGCTGAGAATA
TAGCCTGGAAGCCACTTAAGCCCTCCAAAATTGAAATATCCAGTGAACTA
AAGTGGAAATCCTGAAATCGCCATTCTCGCCCGAACTTTAAATTCTGAAA
ACCGTTAAAACAACCAATATAATGTCAATATATTTCGACCATGATTGTAG
ATTGGTTAATTTAAAGTGGAACTAGACGGTATCTGACTAGGAGAACCACT
GAAAATTTACATGCTTTTCTACAGCTGACTGTAAGTTTAATTTAAAAGGC
AAATTGAAAAATACCTTGTTCTGAGTTATAGGATTTTTCCAGTGATTCAA
TTTATTATCTCATTATTTCACTTTTACATAAAATAGAAAAGAAATCAATG
GAAGAAAAATATTTTCCTAGTTCTTTACTTTTCAGTCAGATTGCACCCCA
GTGCTTTAACTTTTCATGGAAATAACTAATATGTTTTTCCTTTGTTTATT
TCATTTTTTCCAATCTCCAGCTTTACAAGATCATCTCTGTAAGCGCTTTG
ATTGATGATGTAGCGAGGATAATTAGATTGGGCTCATCTAGAAAAATTTC
GTACATGAGGGTGGAGGATATATTGGATATATTGTCCGGGGGTAGTGAAA
AATCCACAAAATTTGCCTTGTTTGGGGGCAAAACTACTTTGTTTAGGGGT
GATTATGAATGTCCGGGGGATCAACTGATGCTTGTCCGAGGGTTAGATTT
GTTGTCCGGGGGAATCAAAAGTCACAATATCCGGGGGCTAAATTTCCAAA
AAATGTCATATCCTCCATTCCCCATATCCAATGTTTTTCTGGACTATTTC
TTGCTAGGTAAAGATAAAGGACAACTTGACCACGTTCTATATTTACAGAA
AGAACTCGTTATCCAAACCAACCTCACTTGCTAATCATCTTTTGAAAAAC
CTAAATTACTCCTCGTGCTTCTATTTTTACAAGTTGATTAATCAATTAAT
TTGTTTTTCTATGAGCGTAATTAGATTCAATTTTATGTGAAACCTTATCT
AACATGGTTGCTGGAAACGGAAGCATTCAAAAGCTCCAAACGTCAAAATA
GATGGCAGCTTATGTAGAATGAACGTCCATGGAATCAAACAATCGTTATA
GAATTTTTTTATCACTTTAAATGAGGATTATTCAATCATGTGGTGCGAAT
TCCTCGTGGTTTCTAAAAAAAGTGGCTAGCCAGGGTGTATAAAAGGGTAT
AAAAGGGCAAGATAAAAACATAAAATACATTACAGAGCTTAAGGAGCTAA
GTTCTTTGTTGAGAGCTTACAGCAGTAAATTTTGGAGAGGAACCAAGGAT
AAATACTTGGTAAAAATGAGGTTGTGTATTTTCTTATCCGTCATCTACTG
CTTGTTTTTCCTAAACTTCATAATCGCAGGTAAGATTTGGTTTATGTGAT
TATGTAATTATGTTGGTCCGCATCTTGTTTTTTAAATGTGGAGGATATAT
TGATTTAAGATACGCAACCATTTTTTGCATCGAGAGATAATATAGTTCAA
TGTTTAATGTCAGTGTATTTGAAAATCCCTTATAAACAGTTGAGGGGTCA
TATAACCAATTAGTAACCGTGAAAAATGCTTACTTGTGCAACTCATTTTT
TAGAAGAGAACCTACTTCCTCGCTTTGGAACAGACTATTATTTTGAGAAG
ACATTGTATAATTGGAACGATGCTGAGGTTAGATGCCAATGGCGAGGTGG
ACATCTCTTTGTACCCAAAGATTTATCGGAATGGAATCTGGTTTATCAGA
CAGCTAAACAGTAAGTATCGTATATCTCCTTTCGGTATATAGTTGGTTAG
CAATGATTCTATAAAGGACTTCTATTCTTGGTTGCCGGGATCCTGTAATA
TGTGCGACTTTTGTAGAGGACTGTGATACAGACCCCCTTCTCACAGACCC
ACTGGGATCCCTTCCCATTAGGAAAATTGGCCAAAATATCGTCATGGTCA
GTTATTTTTAACCCCACTGGCTGAAAAAGATTCTAGCGGGTCTTTGAGAA
CGGGTTGTTTCGATATACAGCTGGTCAGCAGTGATTCTATAAAGAACTCC
ATTCTAAGTTGCTGATATCCTCTAACAGATTCGTGTTTCTGTAATATATG
TGACTTTGAGGTCTGTGATTACTCATATCTTAACTCATATAATGGTATTG
GTAAATGCTTCATTGTAAAAATGGCACCTTAACCTCTCTTGAAAAGAGCT
TATCTCTCAAATGTTCTTCCTGCAAAGAGAGGGGAGGAGGAACGTAGGGC
AGGGTGGAGGATAAAACCACCATAGGAGGCACCCTTTTGTAGGACTGAAC
GTTATCGTGCCTCTTCTTTTCTTTTTTGCATCAATGAATGGAATAACCTG
GGCGATAATATACGGAATCTTCCTTCTATCTCATTATTTAAACAAGCAAT
TCTTAAGTATTTTAGACCTTGCGCTAACTCAATTTTCAGAGTTGCTGACA
ACGATGGCGTGGTTCTTCTTAACCGATTGAGGGTTGGTTTCAGTCATCTT
CGGGACCACAAATTTAGACATAACTTTGCAGACACAATCGACCCCTTCTG
CAACTGTCGAAGTAATTCTTTAGAAATGACACAGCATTTCCTAATGCATT
GCACTGATTACTCCAATGACAGACTTGTAATGTTTGACAGCCTTCTACAA
CTTGACATAACCTTGTTTCCATTTAATTCCAAAACATTGTGTAGAGTACT
TTTTTATGGCGACCCCGATTTTAGCATTGTCCAAAATCATGATATATTGA
ACATAACGATAAAATTTATCCGTGATGCTGGACGTTTTGAGGGACCGTTA
TTCTAGTCTTTTGCTCTCCTAGTTCTTTGTTTTTCCATTTTGTTAATAAT
TATCCTCTGTAGTTAGTTTTTTTAGTCATTACTGCGCTCTATTGTTTAGC
TTATTTGGGGCTCCTTCCTCCTGCCGGTATGATCTGTGGTCCTTTTGCGG
GAGGCTAGGAACTTTTAGATTTGTAATACCTAAAAAAAAAAAAAAAAAAA
AAACAGAGTGCCTCCCTCTAATAAATGCTGCGTTCTAAAGGCCACACCGC
ATCCCAAAAAACAATGCTTATCGGAATCTTACAGATACTCACTAGAAATT
CTTGACCTTTAATATCTGTTTTTTGCTTAAACCTAAACCAACTCTTAACA
GTGCTGTAGTGGCAGCTCCTTGTACCCAATTTAGTCTTCCCCAGGTACCA
CGATGTTTTTTTAGGTAATACGGTATTTCTTATTGATCATCATTAGGAAA
GGAATACACGACTTTTGGCTTGGACTAAACGACAAACAGACAGAAGGACA
ATTTATTGCTGTAGATGGTGCTACTTTATTCTACGAAAACTGGACAGCTG
GTGAACCAAATAATTATAACAATGAAGATTGTGCTCATTCTCGGTACGAT
GGGACCTGGAATGATCACCAATGCTTGACCGCTAAATTTGCGTCCGTATG
TAAAATGCCATTCCATGTCGATATGATTGAGTTTGAAAATCACAAATATT
ATGTTGGAACTGAAAAAGTTACCTGGAGTGAGGCACAGGCTTCGTGTCAA
TACAGAGGTGCTGAACTTGTCAGTTTTAAAGACATTGACGAATCGAGGTT
CATTCATTATGAGGCTGTCAACAAGTAAGTTTTGGTAGAATGTTCTCAAT
TTCACATACACCTATGTCTCTGTGACATGAATTCTAGTAAGTTTTGGGTA
GATTTGACGTTTGGAACCCTTTGAGAGGTTTTAGCCAAAGTATTTTAGAA
AATTAATGATCCTCATAGAGATTGAAATGCATTTAAAAAAGGCAGGAAAA
AGGCCTTTTCAAATAGGATGTTATGTGGTCTGTTATTTGAATTTCCTCAA
AAAGCGAACTTAGAAACATACCTTACAGCACCTGACCCCGAGAATGTAGT
AAACCCCGAGAATGTAGATTTCTCATTTTCAAGGATTGTAGCCTTAACGA
TAGTTCAACTTCATAAAAAGTTGTTTCAGGCCATACTGTTACATATTACT
TATTATTTCTAGACAAGAAATTTTAACTTGAATTAATTTTTTACAACGGA
AATCTGAATCGAAGTTGATTGGATACTACCCGAATTGAGACATTTTTTAA
ATAAATCTTCTCTAAATCGAAATCTATTGGAATTAAGTTATGATGATAGG
GTATTTTCTTATTCCTAATGAACTAAGGAAATGGGGAAAATAGTCCATTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAGTTAGAT
ATTTTGACGAAAATGTTTGACCTACCTTTTGGGGTTAGTTGACCTACAAT
TTGGGGGCCTTCATAACCTGACATGAAAAGTCTGTCAAATTATATGAAAC
TTGTTTCTTGTACTTTCATAACATGAAAGTACTACCTGAGAGATGATAAA
TGTTGACATTTTGAGCTTTTTCGACGTGTCCCAGACCTACTGGGACCCAA
GCCCAATAAGAAGATTTGCCTAAGTTTGGAACAATATAATTTCCATCCCC
ATTGGGATTTTAGTAAAAGATTTTGTCCCGCTGTGGAAAAAAGTTCCACT
GGGGCTGTGAGGCAGGGGTGTTGTTACATATTATAACACAAAATTTTCAA
CCTACAAAATAAAAACAATTTTCATGTCTCTTCTTTTCGTCCTTTCTTTT
ACTTTTCCTCATTTGTAGCACGATAAAATTAATATCTTTGTTAAACTTTT
GTCAGGGTATATTTATAAATCATAAATTTCACTTAGAGAACAATAATTTC
CGATGAATACTAAAATTCCGCTCTCAACAACCAAATCTTTTCACCTACAT
TTTGGGGGTTAAAAAGCGAAAAAATTCAATTTTCAGAATAACAAAGTGCT
CTTTAGAATATTGTTTTGGCACAAAATATTTCTAAAATTTGCTGTTATAA
TTAATCAAATTGAAAAATATCAACATTTTACTATTACTAGATTTAGAGCC
ATAAAACCAAACCTACATTCTGGGGGTTATAACGAAAGTGGGAGTCAACT
TCAAGGACCAAAACAATTAGCCTATCTATCACAAGTAATGAAACTAACCC
CTGGGAAAGGATTTTGGGAGTTCAAAATTTCTTTGAAAACATTCAATGTT
TTCTAAAATGCAAATCTACATCTTTCAGGTCTGATTCAAAATTCACCTAC
ATTCTCGGGGTCAGGTGCTGTAAAGGAATAAATTGTTGAGAACTAATTTC
ATACTTTTCGAAATTATCCATATTAATTTGTGTCAGAGCGCTCACTTTTA
GACAAAATGCATGAAAAGATTTACCATACCAATCGTGAAAATTAGCTTCC
TTACAGTAAAATCTTTGTTGCAATATTACAAAGACCAAAAATCTCACTGT
CTACATATAAAGGTATAAAAAGAGATCAAATTTATCTTCTTTATAGACGG
GGTTTGGAGAAATTTTGGATTGGTTACACAGATGTTGTTAACGAAGGATC
ATTCAAATGGACAGACCATACAGAGTTTGGTTTTACTCTTTTCGCTGCTG
GAGAACCGAACAACGCCGGGAATGAACACTGTGTTTACCAACGAAAAACG
GGATATTGGAACGATGCTAACTGCGAACTAAAGGTCAGATAGTGTTTATT
TTCAAAATGTTAGTTATTTTTGTTTAAAAATGAGCAGAAATGAATATTGT
GTTGCATAGTGTTACAGAATAACGGATATTTGTCTTTTGATAGAAAAAAC
GCTAAAATTTGACAACACTTTGAACAAGTTTTCTAAGAATAAAACAGGTG
AAAACCTGACTTTTTTTCCAATCACACNTACAAGTTTTCTAAATTTGTTC
TCTCCGAAAAGCTACACCTGCCACGACCATACTAGGAAAAACACCGAAGT
TTTTTTAGGAATCCACACTGAATTTGTGAGCGATAAAAATGCTTAATAAA
CACAAAACACAAATGAAACATTTTCTACTTGAATTCAAACAGGCTGGATA
TGTTTGCAAGAAACCATATTTCAATCCTAACCGTGGTGGTAAGAGCTATC
GATTCTTTAAAAGACTTTCAACGTGGGATATTGCTCGACAACTTTGTGAA
CAACTTAAAGGAAGTCTAGTAACTATTGACTCAGAAGCTGAAAATGAATT
TCTCGCTCGAGAGAGTGGAAACAGGTAAGTTAATTCACTGTCACAATGCA
ATGTAAACAGAGTGGGGGAGCATGGGCGTTCTTGAGCGACTTGTTGATCT
TGCGGGATTTTCTTTGTCACTGACCCCCGCCCGTCATACGCTAAATTAAA
TTCTCGCCAAAATTAGCTTTTTCCCTGATCCACCAAATTAAAATTCCTAC
GAAAAAACTTTTTCAGCATCCGCTAAATTAAATTCCCGCCAAAATTTCTT
CCCATTTGTACATCCCATTTTTTGAAATCAGAAATCCAAAACTAAGAATA
CTTTAACGCAATAATGACCAGTAAGTGAGGGCTGTACTGAGAAATATTGC
GACCAATCAATAACCTATTCAAGCTCCCAAAAGCGAGCCAAAAATGACCT
GTATTTAAATCACAAAAAGGGTTACTTTACTTTTCCAGAGGATTTAGTGG
AACATGGATTGGTTATAATGACAAAGATGTTGAAGGAACCTTCAAATGGG
TGTCTGGTGCAACCACGTGTTACAAAAAATGGTTATCAGGGCAACCATCG
TCACCAGATTGTGTATTTTTGAACCCATTCACCAAGTATTGGAGTACCTC
GACGTGCGGATTTACAAGACCTTATATTTGTGAATTCAATTTTTAAATCT
TTTTTTAAAATTTGTTTAGAGAACGACAAACCCTAACCCTTACCCTAACA
AAGAACGACATATTTAGCCATCCCAAACCCCAACCTTGTGTTTAATGACC
AGGGGTTTAAAGAACGATAAAATATGCATGCGCAAGTCTCTATTTGGGTG
AGCTGGAAACATTACACGAACGGATTTAAAAATGCGTGTTAGAAAAGCTA
GACGATACGGTTGGGTCCTGGTCATTCGTTCCTGTAAGTTAGTTTGATTG
GAGAATAACGTACCATTTGTAAGCTTTAGATGTTACAATTCTTTTCCATT
AGCTCAATTCATCATTTCCTTATTTTTGCAGTATAAAGTAAAAAAAGAAA
TTAGTCAAATAGAATCAAAAAATCATAGAAAAGAACTTTGTTTGCTTGGT
CCGATTGCTCTGTTTGAGGGTAATATTAGAGATTGAACTCTAGCCCCTCG
GGCTTTAAGCTCAATGGTCAAAAGTCGCAATGTTCGGGGGTAAATTTCCA
AAAAATGTTCAGCACCCACCCATATTAAATTTTTTTGCCAATTTTCCTTG
ATTTATAGTAATTCGTCACTGCACCTGTTAATATCAAAGTTGTTCACAAA
GAAAAAAGTATATTTTAAGTTAATGACGCCTGGATTTCTATTCTAAACAC
TTTTCAATCACGTAAACAGAGCTACTTTTTGACTTTTTTTGACAATCGCT
CTGGAAAAGACTGCCGAAAGTTCTCTTTGATCTTTTGTTATCCACAGGAA
ACTATTTTGTGCGAACACATGGGACAAAGCTAGGACAAAGGGGTGTACGC
ACGAAGAAGAAGCATTTTGATTTTAATAAATTCAAACCAGAA

Coding sequence (CDS) from alignment at sc0000087:583662..594103-

>TCONS_00008792 ID=TCONS_00008792|Name=TCONS_00008792|organism=Clytia hemisphaerica|type=CDS|length=3195bp|location=Sequence derived from alignment at sc0000087:583662..594103- (Clytia hemisphaerica)
AGGATTTAGTGGAACATGGATTGGTTATAATGACAAAGATGTTGAAGGAA
CCTTCAAATGGGTGTCTGGTGCAACCACGTGTTACAAAAAATGGTTATCA
GGGCAACCATCGTCACCAGATTGTGTATTTTTGAACCCATTCACCAAGTA
TTGGAGTACCTCGACGTGCGGATTTACAAGACCTTATATTTGTGAATTCA
ATTTTTAAGCTGGATATGTTTGCAAGAAACCATATTTCAATCCTAACCGT
GGTGGTAAGAGCTATCGATTCTTTAAAAGACTTTCAACGTGGGATATTGC
TCGACAACTTTGTGAACAACTTAAAGGAAGTCTAGTAACTATTGACTCAG
AAGCTGAAAATGAATTTCTCGCTCGAGAGAGTGGAAACAGACGGGGTTTG
GAGAAATTTTGGATTGGTTACACAGATGTTGTTAACGAAGGATCATTCAA
ATGGACAGACCATACAGAGTTTGGTTTTACTCTTTTCGCTGCTGGAGAAC
CGAACAACGCCGGGAATGAACACTGTGTTTACCAACGAAAAACGGGATAT
TGGAACGATGCTAACTGCGAACTAAAGGTTCATTCATTATGAGGCTGTCA
ACAAGAACTTGTCAGTTTTAAAGACATTGACGAATCGAGAGGATTTAGTG
GAACATGGATTGGTTATAATGACAAAGATGTTGAAGGAACCTTCAAATGG
GTGTCTGGTGCAACCACGTGTTACAAAAAATGGTTATCAGGGCAACCATC
GTCACCAGATTGTGTATTTTTGAACCCATTCACCAAGTATTGGAGTACCT
CGACGTGCGGATTTACAAGACCTTATATTTGTGAATTCAATTTTTAAGCT
GGATATGTTTGCAAGAAACCATATTTCAATCCTAACCGTGGTGGTAAGAG
CTATCGATTCTTTAAAAGACTTTCAACGTGGGATATTGCTCGACAACTTT
GTGAACAACTTAAAGGAAGTCTAGTAACTATTGACTCAGAAGCTGAAAAT
GAATTTCTCGCTCGAGAGAGTGGAAACAGACGGGGTTTGGAGAAATTTTG
GATTGGTTACACAGATGTTGTTAACGAAGGATCATTCAAATGGACAGACC
ATACAGAGTTTGGTTTTACTCTTTTCGCTGCTGGAGAACCGAACAACGCC
GGGAATGAACACTGTGTTTACCAACGAAAAACGGGATATTGGAACGATGC
TAACTGCGAACTAAAGGTTCATTCATTATGAGGCTGTCAACAAGAACTTG
TCAGTTTTAAAGACATTGACGAATCGAGAGGATTTAGTGGAACATGGATT
GGTTATAATGACAAAGATGTTGAAGGAACCTTCAAATGGGTGTCTGGTGC
AACCACGTGTTACAAAAAATGGTTATCAGGGCAACCATCGTCACCAGATT
GTGTATTTTTGAACCCATTCACCAAGTATTGGAGTACCTCGACGTGCGGA
TTTACAAGACCTTATATTTGTGAATTCAATTTTTAAGCTGGATATGTTTG
CAAGAAACCATATTTCAATCCTAACCGTGGTGGTAAGAGCTATCGATTCT
TTAAAAGACTTTCAACGTGGGATATTGCTCGACAACTTTGTGAACAACTT
AAAGGAAGTCTAGTAACTATTGACTCAGAAGCTGAAAATGAATTTCTCGC
TCGAGAGAGTGGAAACAGACGGGGTTTGGAGAAATTTTGGATTGGTTACA
CAGATGTTGTTAACGAAGGATCATTCAAATGGACAGACCATACAGAGTTT
GGTTTTACTCTTTTCGCTGCTGGAGAACCGAACAACGCCGGGAATGAACA
CTGTGTTTACCAACGAAAAACGGGATATTGGAACGATGCTAACTGCGAAC
TAAAGGTTCATTCATTATGAGGCTGTCAACAAGAACTTGTCAGTTTTAAA
GACATTGACGAATCGAGAGGATTTAGTGGAACATGGATTGGTTATAATGA
CAAAGATGTTGAAGGAACCTTCAAATGGGTGTCTGGTGCAACCACGTGTT
ACAAAAAATGGTTATCAGGGCAACCATCGTCACCAGATTGTGTATTTTTG
AACCCATTCACCAAGTATTGGAGTACCTCGACGTGCGGATTTACAAGACC
TTATATTTGTGAATTCAATTTTTAAGCTGGATATGTTTGCAAGAAACCAT
ATTTCAATCCTAACCGTGGTGGTAAGAGCTATCGATTCTTTAAAAGACTT
TCAACGTGGGATATTGCTCGACAACTTTGTGAACAACTTAAAGGAAGTCT
AGTAACTATTGACTCAGAAGCTGAAAATGAATTTCTCGCTCGAGAGAGTG
GAAACAGACGGGGTTTGGAGAAATTTTGGATTGGTTACACAGATGTTGTT
AACGAAGGATCATTCAAATGGACAGACCATACAGAGTTTGGTTTTACTCT
TTTCGCTGCTGGAGAACCGAACAACGCCGGGAATGAACACTGTGTTTACC
AACGAAAAACGGGATATTGGAACGATGCTAACTGCGAACTAAAGGTTCAT
TCATTATGAGGCTGTCAACAAGAACTTGTCAGTTTTAAAGACATTGACGA
ATCGAGAGGATTTAGTGGAACATGGATTGGTTATAATGACAAAGATGTTG
AAGGAACCTTCAAATGGGTGTCTGGTGCAACCACGTGTTACAAAAAATGG
TTATCAGGGCAACCATCGTCACCAGATTGTGTATTTTTGAACCCATTCAC
CAAGTATTGGAGTACCTCGACGTGCGGATTTACAAGACCTTATATTTGTG
AATTCAATTTTTAAGCTGGATATGTTTGCAAGAAACCATATTTCAATCCT
AACCGTGGTGGTAAGAGCTATCGATTCTTTAAAAGACTTTCAACGTGGGA
TATTGCTCGACAACTTTGTGAACAACTTAAAGGAAGTCTAGTAACTATTG
ACTCAGAAGCTGAAAATGAATTTCTCGCTCGAGAGAGTGGAAACAGACGG
GGTTTGGAGAAATTTTGGATTGGTTACACAGATGTTGTTAACGAAGGATC
ATTCAAATGGACAGACCATACAGAGTTTGGTTTTACTCTTTTCGCTGCTG
GAGAACCGAACAACGCCGGGAATGAACACTGTGTTTACCAACGAAAAACG
GGATATTGGAACGATGCTAACTGCGAACTAAAGGTTCATTCATTATGAGG
CTGTCAACAAGAACTTGTCAGTTTTAAAGACATTGACGAATCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004927XLOC_004927Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008792-exon-sc0000087-1575043694:594067..594103TCONS_00008792-exon-sc0000087-1575043694:594067..594103Clytia hemisphaericaexon
TCONS_00008792-exon-sc0000087-1575043694:587730..587756TCONS_00008792-exon-sc0000087-1575043694:587730..587756Clytia hemisphaericaexon
TCONS_00008792-exon-sc0000087-1575043694:585671..585857TCONS_00008792-exon-sc0000087-1575043694:585671..585857Clytia hemisphaericaexon
TCONS_00008792-exon-sc0000087-1575043694:585130..585311TCONS_00008792-exon-sc0000087-1575043694:585130..585311Clytia hemisphaericaexon
TCONS_00008792-exon-sc0000087-1575043694:583662..584715TCONS_00008792-exon-sc0000087-1575043694:583662..584715Clytia hemisphaericaexon
TCONS_00008792-exon-sc0000087-1510915933:594067..594103TCONS_00008792-exon-sc0000087-1510915933:594067..594103Clytia hemisphaericaexon
TCONS_00008792-exon-sc0000087-1510915933:587730..587756TCONS_00008792-exon-sc0000087-1510915933:587730..587756Clytia hemisphaericaexon
TCONS_00008792-exon-sc0000087-1510915933:585671..585857TCONS_00008792-exon-sc0000087-1510915933:585671..585857Clytia hemisphaericaexon
TCONS_00008792-exon-sc0000087-1510915933:585130..585311TCONS_00008792-exon-sc0000087-1510915933:585130..585311Clytia hemisphaericaexon
TCONS_00008792-exon-sc0000087-1510915933:583662..584715TCONS_00008792-exon-sc0000087-1510915933:583662..584715Clytia hemisphaericaexon
TCONS_00008792-exon-sc0000087-1491911889:594067..594103TCONS_00008792-exon-sc0000087-1491911889:594067..594103Clytia hemisphaericaexon
TCONS_00008792-exon-sc0000087-1491911889:587730..587756TCONS_00008792-exon-sc0000087-1491911889:587730..587756Clytia hemisphaericaexon
TCONS_00008792-exon-sc0000087-1491911889:585671..585857TCONS_00008792-exon-sc0000087-1491911889:585671..585857Clytia hemisphaericaexon
TCONS_00008792-exon-sc0000087-1491911889:585130..585311TCONS_00008792-exon-sc0000087-1491911889:585130..585311Clytia hemisphaericaexon
TCONS_00008792-exon-sc0000087-1491911889:583662..584715TCONS_00008792-exon-sc0000087-1491911889:583662..584715Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008792-proteinTCONS_00008792-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:583662..594103 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0277604	0.0270707	0.0942951	0.0352094	0.0748728	0	0	0	0	0	0	0	8.91612	10.6985	0.644576	0.575351	2.18922	3.79239	8.3865	20.0885	1.17337	0.922654	0	0.11575	0	0.0532006	0	0	0.0616237	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR018378C-type_lectin_CS
IPR016187CTDL_fold
Blast
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BLAST of TCONS_00008792 vs. Swiss-Prot (Human)
Match: MRC2 (C-type mannose receptor 2 OS=Homo sapiens GN=MRC2 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.670e-18
Identity = 60/238 (25.21%), Postives = 104/238 (43.70%), Query Frame = 3 
Query:    3 ELVSFKDIDESRFIHYEAVNKRGLEKFWIGYTDVVNEGSFKWTDHTEFGFTLFAAGEPNNAGNEHC--VYQRKTGYWNDANCELKAGYVCKK----------------------PYFNPNRGGKSYRFFKRLSTWDIARQLCEQLKGSLVTIDSEAENEFLARESGNRGFSGTWIGYNDKDVEGTFKWVSGATTCYKKWLSGQP-----SSPDCVFLNPFTKYWSTSTCGFTRPYICE 629
            +L+S  +I E  +I+            WIG  D+   G ++W+D++   +  + + +P+N   E+C  +    +G W + +C +   YVCKK                      P + P + G  YR      +W  +++ C +  G LV+I S AE EF+ ++   +     WIG ND  ++  F+W  G+   +  W   +P     S  DCV +      W+ S C  + P IC+
Sbjct:  272 DLLSITEIHEQTYINGLLTGYS--STLWIGLNDLDTSGGWQWSDNSPLKYLNWESDQPDNPSEENCGVIRTESSGGWQNRDCSIALPYVCKKKPNATAEPTPPDRWANVKVECEPSWQPFQ-GHCYRLQAEKRSWQESKKACLRGGGDLVSIHSMAELEFITKQI-KQEVEELWIGLNDLKLQMNFEWSDGSLVSFTHWHPFEPNNFRDSLEDCVTIWGPEGRWNDSPCNQSLPSICK 505
The following BLAST results are available for this feature:
BLAST of TCONS_00008792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MRC21.670e-1825.21C-type mannose receptor 2 OS=Homo sapiens GN=MRC2 ... [more]
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