TCONS_00008791 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008791
Unique NameTCONS_00008791
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008791 ID=TCONS_00008791|Name=TCONS_00008791|organism=Clytia hemisphaerica|type=transcript|length=1471bp
ATTAATGGCTGTTTTTTTAGAATGTTGGTCTTGAGTCAAAAGAGTTACCA
TGTTTGATTGCTGTCAGCAAAACAAAACCATCGACAATGATTGAAGATGC
ACATGCTAATGGTCAAAGAGATTTCGGTACAAGAATTAATTGAAAAAGCA
AATGAGTTCAAGAATAAAGATGGTTATGGAGATATCAGGTGGCATTTCAT
TGGAAAACTTCAGCGAAATAAAGTCAACAATTTGTTAGGGGCACCAAACT
TGGAATGTATCCAGACAGTCGAAAGTATCAAGCTAGCCACAGCCATCAAC
AGTTCGTGTCAGAAGAAATTGCAACCAGACGCTAAACTCAAAGTGTTTGC
TCAAGTCAACAGTAGTGGTGAAGAAGcaaaatctgGTTGTGAACCGAGCG
AATGTTCAGAGCTGGTACGTCACATCATAACCCAATGTGATTGTCTTCAT
TTCGAAGGTCTAATGACAATCGGATCTTTCTCACATGATTATTCAGCGGG
ACCGAATCCTGATTTCGAGTGTTTGGTACGGTGTCGTGATCAATTGGAAA
GTGACTTAGAactaaaaaaagaagacatcaAATTGAGTATGGGAATGTCA
AATGATTACCAACAAGCTattttagcTGGTGCGACAACTGTCCGCGTTGG
AAGTACTATTTTCGGACAAAGAGAAGTTAAGAAATGATCATTCATTGTAT
TAAAATCGTTGGTTGGATTTGTATGTTGGGGTCTTATGGTCACTCTAAAC
TCAAGTCAAAATGTTGTACTTTTTGGAGTTTCGAAGATCTCTGTTTCGGG
GACTGTATAAAGATATTATACTTTGCTGATATTGTTTCTAGTCGAATGGT
TTTTGGGTGAAAATTAATAGCAGCTTTTCTTAAACTTTGTAAACCCAAAT
AGAGTATACTAAATGTCCTGGTTTTGCATGGTTTTACTGGGTATCTTTTA
CGTAAATACCTGTCCATTAATTTTGAGTGGTTGGGCTTGAAATGACTTTT
CTCTAAAGTGAGCGcattttatgttttgaaaattaactttgttactaatt
cgattttttgaaatcactCAATAGAATGAATGTTATGTCACAGATGATCA
TAGAATCGCTTAGAAtagataaagtttttttttaagacggTACCCCAAAG
CGTCCGCTTGCTCAGTTCCGGAAATATTGCTAGTCAAAGATGATTCGGTA
TTTCGTCAagtacccagctgacacacaacgttgtttatacgttcatctaa
tgttatatggacgtagtgaacgttaaataaacgttgaaacaacgttgtgt
gctaacTGGGTAAAGAAACAGTTGATTCGTGatcttattttatatttgtt
tgaAATTCTTTAGCGTTAATCATATCGAGTTCTataaagatattttcagt
tattcaTAGAATATTGTTAAATTTATATAGAGTAtattaaattttgtaaa
aatttaagtgtaaaaataaaa
Run BLAST on NCBI

transcript from alignment at sc0000087:546724..557161-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008791 ID=TCONS_00008791|Name=TCONS_00008791|organism=Clytia hemisphaerica|type=transcript|length=10438bp|location=Sequence derived from alignment at sc0000087:546724..557161- (Clytia hemisphaerica)
ATTAATGGCTGTTTTTTTAGAATGTTGGTCTTGAGTCAAAAGAGTTACCA
TGTTTGATTGCTGTCAGCAAAACAAAACCATCGACAATGATTGAAGATGC
ACATGCTAATGGTCAAAGAGATTTCGGTGAGAACTATGTATGTTTTATTA
TATATTGTGTGCAGTGACTATAGAGGGTCAGTATTTTAAATTCTCAGATT
CAGCTGAGCTAAAATCTTACAATCTATATCTGTTTATACATTTTTTTAAT
AAGCAACCGATTTACTAAGGGTCCAGCCTTGAAGCTGAGCATGAACTGGG
AAAGCAACCAAAAATGTACATGAAAAAGAGGCATTTTCAGCATTACCTTA
TTGGCCCTTTTTACGCCACGAGCCCAAAAATAACGGCAATAAGGGCCGAT
AAGGTATTTGGCATCAAAATGTGTACCGATGGTATTTGAATACCTAATTT
GAGGCGGTATTTTGGACATAAAACGAGCCAAAAGCCAAAAGTTTTGAAGT
TGATTGACATTTTTAGCTTAAAACTCATAAGCAATTTNGCCATAAGTTTT
GAAGTTGCTTGACATTTTTAGCTTAAAATTCATAAGCAATTTCTTGGCTG
AAATCCGGAAAATCCTTAGCAACTCCAGCCCTGAGCCGAAAATTGGGATT
GCTTGTAAAAAAAGGTGTATATCTTAAAAAATTTGTGGCAGCCTTTAGAC
TTTGCCTGATTATGTGATCCTTTGGTGTATATGGGTTGCTTTTCATATTT
CGAAAAATTTAAAATTTTGGGCCTGGGGACATTTTTAATTTCGCATAGCG
AAAGTATTACGATAGTCTTTCTGTGTGTGTGTGTGGCGAGAAAATTTTTT
GGGCGCAAATTATGGCGTGGGCGTTTGGCTACGGGCGGAATACGGCCAAT
ATTCTAAAGGTGGACTCACTCACAAAGATAAAAAACAGCGCTTTTCTTGA
TAATTAAAATACTCTAGTGCAATACGTGTAACCAAGCCTTTGTAAACATT
CATCTTCATCATGAGAACTTTTTAATGGCTGCTTGATCANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTCT
TTTGTAGAGTATTTAAAGAGGTTTATTATTCGTTTACTACTAAGTATTTT
ATGTTTGTGTAGTTAGTGAATGCACCAATAGTTGATAATGCTCAGTAAGT
AGTACAAAAAGAGTTAATTTTACATAACAACAAACATATAAACCCTCTTC
TTCAAAAAACTACAAACAGCACAGGTATGATNAAAATGTATAACATGCCA
TAGTTTTGTTGGTTACATCAGTCAGAAAACACATTTTAAACACGGCAATT
ATGAAAAATTCACTATGGTCAGAGCCCTTAAAGCTGAGCATGAACCGGGA
AAGCAACCAAAAATACATGAAAAAGAGGCATTTTCAGCATTACCTTATCG
GCCCTTTTTACGCTGGCCCTTATTACGCCACGAGCCCAAAAATAACGCCA
ATAAGAGCCGGTGTAAAAAGGGCCGATAAGGTATTTGGCATTAAAATGTG
TACCGATGGTATTTGAATACCTAATTTGAGGCGGTATTTTGGACATAAAA
CGAGCCAAAAGCCATAAGTTTTGAAGTTGCTTGACATTTTTAGCTTAAAA
TTCATAAGCAATTTCTTGGCTGAAATCNTTTGATGACAGTTTTTTATCTG
ATGAAGTTTGATTGTTGTTCGATGAGTTTGGATTAAGAAAAAGTTTCAGC
TTTTCCTCCCCGATGCCAGGGCAGGCAGGCGATGATGTCAACCGAACCCT
ATCAAACCAATTTTGGTAATTGAACCATCAAATTTCATCAAACAAAATCG
AACAATAGGTGTTCGATTNCCTTATCGGCCCTTTTTACGCTGGCCCTTAT
TACGCCACGAGCCCAAAAATAACGCCAATAAGAGCCGGTGTAAAAAGGGC
CGATAAGGTATTTGGCATTAAAATGTGTACCGATGGTATTTGAATACCTA
ATTTGAGGCGGTATTTTGGACATAAAACGAGCCAAAAGCCATAAGTTTTG
AAGTTGCTTGACATTTTTAGCTTAAAATTCATAAGCAATTTCTTGGCTGA
AATCCGGAAAATCCTTAGCAACTCCAGCCCTGAGCCGAAAATTGGGATTG
CTTGTAAAAAAAGGTGTATATCTTAAAAAATTTGTGGCAGCCTTTAGACT
TTGTCTGATTACTGTATGTGATCCTTTGGTGTATCTGGGTTGATTTTCAT
GTTTCGGAAATTCAAAAATTTGGGCCATTGAGCCTCTGGTACAACTGGAC
AAATACTGAATATGCGCCAAGTTCGGTGCGCACGTTCGACGATTCATTTC
TAGTCATTTTAAAATAATGGTCGTTTTACTTGTGTTAATGGGTAATTATA
ATGAAAACTGTTTTAAAGCATTACTAAAGCCTGCTTATTCTTTAACCCAG
CAAAATTAGTATTTAAAAATAGTGATTCGAGAATTTCGGATTTTTTGTTT
TTTAAATTTCGAAACTTTTTTATTCTTCAATACCATAGGTACAAGAATTA
ATTGAAACTTTTTTATTCTTCAATACCATCAGGGGGTGAAAATAGAAGGG
ACCCTTACACTGCTTTTTTCCGGTCAAGTGTATGTAACCCCCATTGTTTG
AGTTGATAATGTTATTGTTCTATAAACAGCCAATCAAAAGCCAAGAAGAA
AATAAATAAGCCAATCAGCGAGCAGGGATAAATTTTTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTT
TGGATTTCCAAAGTCCCGCTAAGGGTCGGAAAAATCAGAAAATCAAATTT
CAGTCCCACTAAGGGTTGGAAAAATAGGAAAATTTCAACTTTCTACCCCT
ACCTAAAGATCGAAGGTCAAACTTGGTCAAATTTGTCCCGCTAAGGGTCA
TTGAGTCCAATCCTTTTTAAACCAGCAACTAGTTTCTCGTTAATGATTTT
GGTTGGCCTTCCTCTCCTTCTTAACGCCATGTTTATTTGAAACGCTGTTA
TTGCGTTCAATGTGTGTCACTCTACCACAAGGTACCCACTCTCCACCGTA
GCCCCTATGATTTGGGTAAAAAAACCTTACTCGACATTTGAAAAAAATAT
ATTTTCACTCGTTAAACTGTTAACTCGGCTTTTCAAACCGTAAGTTTCTT
TTTAGATGAGATCGTATGTTTTTAAACGAAGATAGTATGTTTTTAAAAAA
CAAAGTATTCTTTTAAAAGATAATATGTTTTTAAAAGAAGATAGTATTGT
TTTAAAAAGATAGTATGTTTTTAAACAAAGATAGTATTGTTTTAAGAAGA
TAGTATGCTTTCAAACGAAGATAGTATTGGGTCTGATTAGGGGTCTCTTC
AAAGTCAATGAAGTTTACTTTCGATTAAAGCAAAAATGAAGCAAGTCTTT
TCAACAGTGAGAAATCGCCCTGCAACAAACTTTCTCATTTGTCAATTGCT
AGAATCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGAATA
TGAAGGGTACTATGATGTAGTTTCTAGCCTGATGTGTAACCTAATTGTTT
TTTCGCTAATTTTCGCGAAAAACCGTAAAAACTGATTATGACGTCGTAAT
CGATGACGTCATCAAAACTAAAAATTGAATTTCTCAACGATTGTTTATCC
AATTGTCTTCAAACTTTCACCAAAGATGTATCCCACTAAAGTCGATCATT
TGAAAAAAAAACTTTTTCGAAATTTTGATTATGTCAGCAAAAAATATGAT
TTCTTGTTTTTTTGCTAATTTCTGATGACGTCATCAAAATTTCGAAAAAA
TTTCTTTTTTAAATGGTCGACTTTAGTGAGATATATCTTTGGTGAAAGTT
TGAAGACAATTGGATAAACCGTTTTTGAGAAATTCAATTTTTAATTTTGA
TGACGTCATCGATTATGACGTCATAATCAGTTTTTGCTGTTTTTCACGAA
AATCAGCGAAAAAACAATTAGGTTACACATCAGGTTAGAAACTTCATTAT
AGTACCCTTCATGTTCAGTCATTTGTTTGGTCATTTTCTGTCGACTAATG
CGATCTAAAAATTATGGTAATTTTCAGTTTTTGAGACATGCCATAACTTA
CCCGAGGACCCACGGGACCCACGAGGGCACGGGACCCACGTAAATAATCA
CACTCTTTTCCAAGCCAGTAAACTAAATCATGATTCAAAATAAATAAACA
ACACAAAAATTTGATTTTATTCAAACAAAGCTTTTCGAGTCTTAACTGCT
CATCATCAGGTTAAAAATGAAATTTCTANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATGGATTATTGCGT
TGAGATTTTGGAAAATCTCAAAGAGTATTATTTCTTTAAAGTTGGCTAGT
TTTTACCCTGCCATTTTCTAGTTCAGAAGCTGGAGTTCAACTACTGTCCA
TGGGGTCAACTGATGCTTGTCTGAAGGTTAGACCTGCTGTTTGTGGGTCA
CAGGGTAAATTTCCAAAAAAATTTATATCCTCAAACAATATTCAAATTTG
TTCTGGAAGAGCCCAATGATTTTGATGGTGGTGTACCATCATTCATATCA
GAAAGATACAACAGATTTTTCTGACTAATGTAGCCGTTTTCTCAATTTTA
GAAAAATTCTACTGTTTATAGAAAGAAGTTGATATAAACTTTGCGCAAGT
GAAATCACAAGTGTCATTTTTTCTTCTTCATTTTCAAAAAACTTTAAAAT
TTATCACACGTTTTCGTCGTTGATGTTCTAATATTATGCGAAATTTTCGA
CTTTAAGTCGTCTTGTTTTCTATCTATTTCTCCGATTGAGCCTCTGGTAC
AGCTGGATAAATACTGAAATGCGCCAAGTTCGGTGCGCACGTTCGACGAT
CCATTTCTAGTCATTTTAAAGTAATGGACGTTTTATTTGTCTTAATGAGT
AATTATAATGAAAACTGTTTTAAAACATTTCTAAAGCCTGCTTATTCTTT
AACCCAGCAAAATTAGTATTTAAAAATAGTGATTCGAGAATTTCGGATTT
TTTGTTTTTTAAATTTTGAAACTTTTTTATTCTTCAATACCATAGGTACA
AGAATTAATTGAAAAAGCAAATGAGTTCAAGGTAAGTGTCTGTAAATTTT
GATTTAGACGTTTAATCTTGTGCAATCTCGCTGACGCCTTAGAATTTGTA
AAACAGCGGGTTATGCTTTGTCTTTGGTACACTTAGTTTTAAGACACTTT
AAAAAAAGCTTTCATAAATGTTTATCGATACACACAATTTTGTGTATTTT
GCAGAATAAAGATGGTTATGGAGATATCAGGTGGCATTTCATTGGAAAAC
TTCAGCGAAATAAAGTCAACAATTTGTTAGGTAAGCATCCTTGAAACATT
AAATTTAGCGACGGCTACATTTGCTTGTTTTTTGATAAAGTCGTTAATAA
AAATGTTTTGTTCTTGATACGTTTGTCAACCCTTGGATTAAAAGGGATTG
GACTTCGTTTTACCGTCATTGCTTAGCGTCAAATGTAAAAAAATTACATC
AGGAGAAAGTTTGATTAGAATCATTTTCACTTTCAGGGGCACCAAACTTG
GAATGTATCCAGACAGTCGAAAGTATCAAGCTAGCCACAGCCATCAACAG
TTCGTGTCAGAAGAAATTGCAACCAGACGCTAAACTCAAAGTGTTTGCTC
AAGTCAACAGTAGTGGTGAAGAAGGTATGAAGAAAAAACATCTAATAACA
ACTTTTCACTATTGCACAAATGGACACAGGGGCGAGACGAATAAATCATC
CGGTTGGAACGTGAATGATTTTCCTACCCGAGTGAAATTCTGCATGTTCC
AAGGAATGAAATGCATTTTATACACCCAGTTGATTCACTTTCTACTGTGG
AAAAATTCTACTGTACTCGTAGACTGCATTCACTATTGGACTCGTGCTAC
CTATACTACCTCTTGAAAAGAATGTCAGACTTAAATATTCAATCATTTTG
ATTCAAACATTTTACGTTATCTTCGGACTCTTCTTGAAAATCTTGGATAA
CAAAAAAGACTTTAGTGGTCTACAAGTGAACTACAGTACTGGATACTCCT
TGAAAAAGGAGGTCAACTAAATCTTTTTAACTTTCGTTTTTAAGCAAAAT
CTGGTTGTGAACCGAGCGAATGTTCAGAGCTGGTACGTCACATCATAACC
CAATGTGATTGTCTTCATTTCGAAGGTCTAATGACAATCGGATCTTTCTC
ACATGATTATTCAGCGGGACCGAATCCTGATTTCGAGGTATGTTTTCTTT
TCGACTTTTGCATCAGTAAAGTCAGCCTCATTCAATTAAAGGATCTACTG
TACCTTGACGATGTCGTTAAAATTGCCATTCGCTACTATCAGGGGGATTC
CTGGTATGTAAGTAAGTCTGCGACCGTAGTCGGAGGCGACGCGAAGGCTC
CTCTTTCAATAGTAGGGGAGGGCTCCACTATTGCTGAGCATCAAGCATAG
AGGGCTCATGTAGGATTTTGGAGAATCTTTGGTATGACCTGGCTGAGGGT
TGAACCCACAACCTTGCGCATCGTAGCCGGATGCCCTACCACTGCACTAC
GGATGATAAGACAGATACAAGTTAAGTTTCTGACTAGAAGTTACAGGTAC
AGTCAAGTCTCTACAGGGTGTCCGAAAAGTGTGGTACAAATTTTAATTAT
TTATCTATTTATGGGTTTAAATAGATAAATAATTAAAATTTGTACCACAC
TTTTCGGACACCCTGTAGAGACTTGACGGTACCTGTAACTTCTAGTCAGA
AACTTAACTTGTATCTGTCTTATCATAAAGATGTTATATTATCAGATTGA
TTTTTCTGGATAAAAACTGTGTTTAATGAAGGAAGGTACAAACTCATGAA
TATTGGTTTCTTTTGACTAAATAACTAAAAGTGTAACAACTTTATCTTCC
CAGTGTTTGGTACGGTGTCGTGATCAATTGGAAAGTGACTTAGAACTAAA
AAAAGAAGACATCAAATTGAGTATGGGAATGTCAAATGATTACCAACAAG
CTGTAAGTCTCGTTCTTTCTCTCAGCGTGATCGTCTACAATCGGCGCCGA
AATATTTGGCACAAAAGGGGAATTCCATCAAAACTTTAAAACCGCAAATG
ATTTTTAAGCGCTTTGAAGTACAGCTCGGAAGTAGAGTTTTAACGTTAGA
CTTATAACTTGGGACCTTAGGATCTCAGGATCTAAAAGCTCAAAAATGTT
CCAATATGGCTGAGAACATAGCCTGGAAGGCACGTGACCCTTCCAAAATC
GAAATATTCAATGAAAGAAAGTGGAAGTACTGAAATTGCGATTCTCGCCC
GAGCTTTAAACTCTGAAAAACGTTAAAATACCCTAATTTGCTAATATATT
TCGGTACTGATTGTAGTCTGACTCGCCGTCCTATGCCGTCTTTGTCCATA
AGAAGATTGTCCATGCAAGTTGTCTGTACACAAACCCTGTTCTACGGCTA
ATTTCAAAATTCATTGCCGTAGAGGGTCTGTTGTCATTGTCTTTTGTCAT
TTGAGATTTTTCAAACCGACCGCTGGAGTGTTTGTGAGAGAGGGGAGACG
ACGAGATAAGTGTTGATATTTACAAATCCTACTTCATCGCAGAGGTCGGA
GACTGGGAATTTTTTTTTATCAAACAGACAATGCGCACAGAGTGTACTAC
GAAACGATAAACGTGAGATACACTCTGGTACAGAGAACTCTGCAAGGGGA
TGAGAGCTGCTTTTCTTTCTTTTGAAACAAATACTGGCGCTGTAGCTGCT
CAAAATGTTTCAAATTTTCATCTAAAAGAAAGAAATTGGCACTGAATCTG
TAGCACTCGTTAATAAATTACTTCTTTCATTTTAGATTTTAGCTGGTGCG
ACAACTGTCCGCGTTGGAAGTACTATTTTCGGACAAAGAGAAGTTAAGAA
ATGATCATTCATTGTATTAAAATCGTTGGTTGGATTTGTATGTTGGGGTC
TTATGGTCACTCTAAACTCAAGTCAAAATGTTGTACTTTTTGGAGTTTCG
AAGATCTCTGTTTCGGGGACTGTATAAAGATATTATACTTTGCTGATATT
GTTTCTAGTCGAATGGTTTTTGGGTGAAAATTAATAGCAGCTTTTCTTAA
ACTTTGTAAACCCAAATAGAGTATACTAAATGTCCTGGTTTTGCATGGTT
TTACTGGGTATCTTTTACGTAAATACCTGTCCATTAATTTTGAGTGGTTG
GGCTTGAAATGACTTTTCTCTAAAGTGAGCGCATTTTATGTTTTGAAAAT
TAACTTTGTTACTAATTCGATTTTTTGAAATCACTCAATAGAATGAATGT
TATGTCACAGATGATCATAGAATCGCTTAGAATAGATAAAGTTTTTTTTT
AAGACGGTACCCCAAAGCGTCCGCTTGCTCAGTTCCGGAAATATTGCTAG
TCAAAGATGATTCGGTATTTCGTCAAGTACCCAGCTGACACACAACGTTG
TTTATACGTTCATCTAATGTTATATGGACGTAGTGAACGTTAAATAAACG
TTGAAACAACGTTGTGTGCTAACTGGGTAAAGAAACAGTTGATTCGTGAT
CTTATTTTATATTTGTTTGAAATTCTTTAGCGTTAATCATATCGAGTTCT
ATAAAGATATTTTCAGTTATTCATAGAATATTGTTAAATTTATATAGAGT
ATATTAAATTTTGTAAAAATTTAAGTGTAAAAATAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004926XLOC_004926Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008791-exon-sc0000087-1575043694:557036..557161TCONS_00008791-exon-sc0000087-1575043694:557036..557161Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1575043694:550331..550366TCONS_00008791-exon-sc0000087-1575043694:550331..550366Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1575043694:550082..550157TCONS_00008791-exon-sc0000087-1575043694:550082..550157Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1575043694:549738..549875TCONS_00008791-exon-sc0000087-1575043694:549738..549875Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1575043694:549175..549317TCONS_00008791-exon-sc0000087-1575043694:549175..549317Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1575043694:548410..548508TCONS_00008791-exon-sc0000087-1575043694:548410..548508Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1575043694:546724..547576TCONS_00008791-exon-sc0000087-1575043694:546724..547576Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1510915933:557036..557161TCONS_00008791-exon-sc0000087-1510915933:557036..557161Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1510915933:550331..550366TCONS_00008791-exon-sc0000087-1510915933:550331..550366Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1510915933:550082..550157TCONS_00008791-exon-sc0000087-1510915933:550082..550157Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1510915933:549738..549875TCONS_00008791-exon-sc0000087-1510915933:549738..549875Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1510915933:549175..549317TCONS_00008791-exon-sc0000087-1510915933:549175..549317Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1510915933:548410..548508TCONS_00008791-exon-sc0000087-1510915933:548410..548508Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1510915933:546724..547576TCONS_00008791-exon-sc0000087-1510915933:546724..547576Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1491911889:557036..557161TCONS_00008791-exon-sc0000087-1491911889:557036..557161Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1491911889:550331..550366TCONS_00008791-exon-sc0000087-1491911889:550331..550366Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1491911889:550082..550157TCONS_00008791-exon-sc0000087-1491911889:550082..550157Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1491911889:549738..549875TCONS_00008791-exon-sc0000087-1491911889:549738..549875Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1491911889:549175..549317TCONS_00008791-exon-sc0000087-1491911889:549175..549317Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1491911889:548410..548508TCONS_00008791-exon-sc0000087-1491911889:548410..548508Clytia hemisphaericaexon
TCONS_00008791-exon-sc0000087-1491911889:546724..547576TCONS_00008791-exon-sc0000087-1491911889:546724..547576Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:546724..557161 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.90102	0.764502	1.8467	1.06282	6.06558	5.15482	7.98729	6.77875	2.75725	1.64991	0.922102	1.22784	0.597786	0	0.944021	3.77311	6.383	3.58674	0	2.54425	3.59148	5.48242	1.25162	1.67804	15.4049	10.1115	6.64559	4.23763	2.35368	3.17437
Blast
[Close]
BLAST of TCONS_00008791 vs. Swiss-Prot (Human)
Match: PLPHP (Pyridoxal phosphate homeostasis protein OS=Homo sapiens GN=PROSC PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.558e-58
Identity = 96/186 (51.61%), Postives = 129/186 (69.35%), Query Frame = 1 
Query:  127 VQELIEKANEFKNKDGYGDIRWHFIGKLQRNKVNNLLGAPNLECIQTVESIKLATAINSSCQKKLQPDAKLKVFAQVNSSGEEAKSGCEPSECSELVRHIITQCDCLHFEGLMTIGSFSHDYSAGPNPDFECLVRCRDQLESDLELKKEDIKLSMGMSNDYQQAILAGATTVRVGSTIFGQREVKK 684
            VQEL+EKA+  K      +I+WHFIG LQ+  VN L+  PNL  ++TV+S+KLA  +NSS Q+K  P+ +LKV  Q+N+SGEE+K G  PSE   +V HI  +C  L F GLMTIGSF HD S GPNPDF+ L+  R++L   L +  + ++LSMGMS D+Q A+  G+T VR+GSTIFG+R+  K
Sbjct:   70 VQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNSSWQRKGSPE-RLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDYSK 254
The following BLAST results are available for this feature:
BLAST of TCONS_00008791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLPHP1.558e-5851.61Pyridoxal phosphate homeostasis protein OS=Homo sa... [more]
back to top