TCONS_00008790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008790
Unique NameTCONS_00008790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008790 ID=TCONS_00008790|Name=TCONS_00008790|organism=Clytia hemisphaerica|type=transcript|length=1482bp
ATTAATGGCTGTTTTTTTAGAATGTTGGTCTTGAGTCAAAAGAGTTACCA
TGTTTGATTGCTGTCAGCAAAACAAAACCATCGACAATGATTGAAGATGC
ACATGCTAATGGTCAAAGAGATTTCGGTGAGAACTAtGTACAAGAATTAA
TTGAAAAAGCAAATGAGTTCAAGAATAAAGATGGTTATGGAGATATCAGG
TGGCATTTCATTGGAAAACTTCAGCGAAATAAAGTCAACAATTTGTTAGG
GGCACCAAACTTGGAATGTATCCAGACAGTCGAAAGTATCAAGCTAGCCA
CAGCCATCAACAGTTCGTGTCAGAAGAAATTGCAACCAGACGCTAAACTC
AAAGTGTTTGCTCAAGTCAACAGTAGTGGTGAAGAAGcaaaatctgGTTG
TGAACCGAGCGAATGTTCAGAGCTGGTACGTCACATCATAACCCAATGTG
ATTGTCTTCATTTCGAAGGTCTAATGACAATCGGATCTTTCTCACATGAT
TATTCAGCGGGACCGAATCCTGATTTCGAGTGTTTGGTACGGTGTCGTGA
TCAATTGGAAAGTGACTTAGAactaaaaaaagaagacatcaAATTGAGTA
TGGGAATGTCAAATGATTACCAACAAGCTattttagcTGGTGCGACAACT
GTCCGCGTTGGAAGTACTATTTTCGGACAAAGAGAAGTTAAGAAATGATC
ATTCATTGTATTAAAATCGTTGGTTGGATTTGTATGTTGGGGTCTTATGG
TCACTCTAAACTCAAGTCAAAATGTTGTACTTTTTGGAGTTTCGAAGATC
TCTGTTTCGGGGACTGTATAAAGATATTATACTTTGCTGATATTGTTTCT
AGTCGAATGGTTTTTGGGTGAAAATTAATAGCAGCTTTTCTTAAACTTTG
TAAACCCAAATAGAGTATACTAAATGTCCTGGTTTTGCATGGTTTTACTG
GGTATCTTTTACGTAAATACCTGTCCATTAATTTTGAGTGGTTGGGCTTG
AAATGACTTTTCTCTAAAGTGAGCGcattttatgttttgaaaattaactt
tgttactaattcgattttttgaaatcactCAATAGAATGAATGTTATGTC
ACAGATGATCATAGAATCGCTTAGAAtagataaagtttttttttaagacg
gTACCCCAAAGCGTCCGCTTGCTCAGTTCCGGAAATATTGCTAGTCAAAG
ATGATTCGGTATTTCGTCAagtacccagctgacacacaacgttgtttata
cgttcatctaatgttatatggacgtagtgaacgttaaataaacgttgaaa
caacgttgtgtgctaacTGGGTAAAGAAACAGTTGATTCGTGatcttatt
ttatatttgtttgaAATTCTTTAGCGTTAATCATATCGAGTTCTataaag
atattttcagttattcaTAGAATATTGTTAAATTTATATAGAGTAtatta
aattttgtaaaaatttaagtgtaaaaataaaa
Run BLAST on NCBI

protein sequence of TCONS_00008790-protein

>TCONS_00008790-protein ID=TCONS_00008790-protein|Name=TCONS_00008790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MIEDAHANGQRDFGENYVQELIEKANEFKNKDGYGDIRWHFIGKLQRNKV
NNLLGAPNLECIQTVESIKLATAINSSCQKKLQPDAKLKVFAQVNSSGEE
AKSGCEPSECSELVRHIITQCDCLHFEGLMTIGSFSHDYSAGPNPDFECL
VRCRDQLESDLELKKEDIKLSMGMSNDYQQAILAGATTVRVGSTIFGQRE
VKK
Run BLAST on NCBI

transcript from alignment at sc0000087:546724..557161-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008790 ID=TCONS_00008790|Name=TCONS_00008790|organism=Clytia hemisphaerica|type=transcript|length=10438bp|location=Sequence derived from alignment at sc0000087:546724..557161- (Clytia hemisphaerica)
ATTAATGGCTGTTTTTTTAGAATGTTGGTCTTGAGTCAAAAGAGTTACCA
TGTTTGATTGCTGTCAGCAAAACAAAACCATCGACAATGATTGAAGATGC
ACATGCTAATGGTCAAAGAGATTTCGGTGAGAACTATGTATGTTTTATTA
TATATTGTGTGCAGTGACTATAGAGGGTCAGTATTTTAAATTCTCAGATT
CAGCTGAGCTAAAATCTTACAATCTATATCTGTTTATACATTTTTTTAAT
AAGCAACCGATTTACTAAGGGTCCAGCCTTGAAGCTGAGCATGAACTGGG
AAAGCAACCAAAAATGTACATGAAAAAGAGGCATTTTCAGCATTACCTTA
TTGGCCCTTTTTACGCCACGAGCCCAAAAATAACGGCAATAAGGGCCGAT
AAGGTATTTGGCATCAAAATGTGTACCGATGGTATTTGAATACCTAATTT
GAGGCGGTATTTTGGACATAAAACGAGCCAAAAGCCAAAAGTTTTGAAGT
TGATTGACATTTTTAGCTTAAAACTCATAAGCAATTTNGCCATAAGTTTT
GAAGTTGCTTGACATTTTTAGCTTAAAATTCATAAGCAATTTCTTGGCTG
AAATCCGGAAAATCCTTAGCAACTCCAGCCCTGAGCCGAAAATTGGGATT
GCTTGTAAAAAAAGGTGTATATCTTAAAAAATTTGTGGCAGCCTTTAGAC
TTTGCCTGATTATGTGATCCTTTGGTGTATATGGGTTGCTTTTCATATTT
CGAAAAATTTAAAATTTTGGGCCTGGGGACATTTTTAATTTCGCATAGCG
AAAGTATTACGATAGTCTTTCTGTGTGTGTGTGTGGCGAGAAAATTTTTT
GGGCGCAAATTATGGCGTGGGCGTTTGGCTACGGGCGGAATACGGCCAAT
ATTCTAAAGGTGGACTCACTCACAAAGATAAAAAACAGCGCTTTTCTTGA
TAATTAAAATACTCTAGTGCAATACGTGTAACCAAGCCTTTGTAAACATT
CATCTTCATCATGAGAACTTTTTAATGGCTGCTTGATCANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTCT
TTTGTAGAGTATTTAAAGAGGTTTATTATTCGTTTACTACTAAGTATTTT
ATGTTTGTGTAGTTAGTGAATGCACCAATAGTTGATAATGCTCAGTAAGT
AGTACAAAAAGAGTTAATTTTACATAACAACAAACATATAAACCCTCTTC
TTCAAAAAACTACAAACAGCACAGGTATGATNAAAATGTATAACATGCCA
TAGTTTTGTTGGTTACATCAGTCAGAAAACACATTTTAAACACGGCAATT
ATGAAAAATTCACTATGGTCAGAGCCCTTAAAGCTGAGCATGAACCGGGA
AAGCAACCAAAAATACATGAAAAAGAGGCATTTTCAGCATTACCTTATCG
GCCCTTTTTACGCTGGCCCTTATTACGCCACGAGCCCAAAAATAACGCCA
ATAAGAGCCGGTGTAAAAAGGGCCGATAAGGTATTTGGCATTAAAATGTG
TACCGATGGTATTTGAATACCTAATTTGAGGCGGTATTTTGGACATAAAA
CGAGCCAAAAGCCATAAGTTTTGAAGTTGCTTGACATTTTTAGCTTAAAA
TTCATAAGCAATTTCTTGGCTGAAATCNTTTGATGACAGTTTTTTATCTG
ATGAAGTTTGATTGTTGTTCGATGAGTTTGGATTAAGAAAAAGTTTCAGC
TTTTCCTCCCCGATGCCAGGGCAGGCAGGCGATGATGTCAACCGAACCCT
ATCAAACCAATTTTGGTAATTGAACCATCAAATTTCATCAAACAAAATCG
AACAATAGGTGTTCGATTNCCTTATCGGCCCTTTTTACGCTGGCCCTTAT
TACGCCACGAGCCCAAAAATAACGCCAATAAGAGCCGGTGTAAAAAGGGC
CGATAAGGTATTTGGCATTAAAATGTGTACCGATGGTATTTGAATACCTA
ATTTGAGGCGGTATTTTGGACATAAAACGAGCCAAAAGCCATAAGTTTTG
AAGTTGCTTGACATTTTTAGCTTAAAATTCATAAGCAATTTCTTGGCTGA
AATCCGGAAAATCCTTAGCAACTCCAGCCCTGAGCCGAAAATTGGGATTG
CTTGTAAAAAAAGGTGTATATCTTAAAAAATTTGTGGCAGCCTTTAGACT
TTGTCTGATTACTGTATGTGATCCTTTGGTGTATCTGGGTTGATTTTCAT
GTTTCGGAAATTCAAAAATTTGGGCCATTGAGCCTCTGGTACAACTGGAC
AAATACTGAATATGCGCCAAGTTCGGTGCGCACGTTCGACGATTCATTTC
TAGTCATTTTAAAATAATGGTCGTTTTACTTGTGTTAATGGGTAATTATA
ATGAAAACTGTTTTAAAGCATTACTAAAGCCTGCTTATTCTTTAACCCAG
CAAAATTAGTATTTAAAAATAGTGATTCGAGAATTTCGGATTTTTTGTTT
TTTAAATTTCGAAACTTTTTTATTCTTCAATACCATAGGTACAAGAATTA
ATTGAAACTTTTTTATTCTTCAATACCATCAGGGGGTGAAAATAGAAGGG
ACCCTTACACTGCTTTTTTCCGGTCAAGTGTATGTAACCCCCATTGTTTG
AGTTGATAATGTTATTGTTCTATAAACAGCCAATCAAAAGCCAAGAAGAA
AATAAATAAGCCAATCAGCGAGCAGGGATAAATTTTTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTT
TGGATTTCCAAAGTCCCGCTAAGGGTCGGAAAAATCAGAAAATCAAATTT
CAGTCCCACTAAGGGTTGGAAAAATAGGAAAATTTCAACTTTCTACCCCT
ACCTAAAGATCGAAGGTCAAACTTGGTCAAATTTGTCCCGCTAAGGGTCA
TTGAGTCCAATCCTTTTTAAACCAGCAACTAGTTTCTCGTTAATGATTTT
GGTTGGCCTTCCTCTCCTTCTTAACGCCATGTTTATTTGAAACGCTGTTA
TTGCGTTCAATGTGTGTCACTCTACCACAAGGTACCCACTCTCCACCGTA
GCCCCTATGATTTGGGTAAAAAAACCTTACTCGACATTTGAAAAAAATAT
ATTTTCACTCGTTAAACTGTTAACTCGGCTTTTCAAACCGTAAGTTTCTT
TTTAGATGAGATCGTATGTTTTTAAACGAAGATAGTATGTTTTTAAAAAA
CAAAGTATTCTTTTAAAAGATAATATGTTTTTAAAAGAAGATAGTATTGT
TTTAAAAAGATAGTATGTTTTTAAACAAAGATAGTATTGTTTTAAGAAGA
TAGTATGCTTTCAAACGAAGATAGTATTGGGTCTGATTAGGGGTCTCTTC
AAAGTCAATGAAGTTTACTTTCGATTAAAGCAAAAATGAAGCAAGTCTTT
TCAACAGTGAGAAATCGCCCTGCAACAAACTTTCTCATTTGTCAATTGCT
AGAATCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGAATA
TGAAGGGTACTATGATGTAGTTTCTAGCCTGATGTGTAACCTAATTGTTT
TTTCGCTAATTTTCGCGAAAAACCGTAAAAACTGATTATGACGTCGTAAT
CGATGACGTCATCAAAACTAAAAATTGAATTTCTCAACGATTGTTTATCC
AATTGTCTTCAAACTTTCACCAAAGATGTATCCCACTAAAGTCGATCATT
TGAAAAAAAAACTTTTTCGAAATTTTGATTATGTCAGCAAAAAATATGAT
TTCTTGTTTTTTTGCTAATTTCTGATGACGTCATCAAAATTTCGAAAAAA
TTTCTTTTTTAAATGGTCGACTTTAGTGAGATATATCTTTGGTGAAAGTT
TGAAGACAATTGGATAAACCGTTTTTGAGAAATTCAATTTTTAATTTTGA
TGACGTCATCGATTATGACGTCATAATCAGTTTTTGCTGTTTTTCACGAA
AATCAGCGAAAAAACAATTAGGTTACACATCAGGTTAGAAACTTCATTAT
AGTACCCTTCATGTTCAGTCATTTGTTTGGTCATTTTCTGTCGACTAATG
CGATCTAAAAATTATGGTAATTTTCAGTTTTTGAGACATGCCATAACTTA
CCCGAGGACCCACGGGACCCACGAGGGCACGGGACCCACGTAAATAATCA
CACTCTTTTCCAAGCCAGTAAACTAAATCATGATTCAAAATAAATAAACA
ACACAAAAATTTGATTTTATTCAAACAAAGCTTTTCGAGTCTTAACTGCT
CATCATCAGGTTAAAAATGAAATTTCTANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATGGATTATTGCGT
TGAGATTTTGGAAAATCTCAAAGAGTATTATTTCTTTAAAGTTGGCTAGT
TTTTACCCTGCCATTTTCTAGTTCAGAAGCTGGAGTTCAACTACTGTCCA
TGGGGTCAACTGATGCTTGTCTGAAGGTTAGACCTGCTGTTTGTGGGTCA
CAGGGTAAATTTCCAAAAAAATTTATATCCTCAAACAATATTCAAATTTG
TTCTGGAAGAGCCCAATGATTTTGATGGTGGTGTACCATCATTCATATCA
GAAAGATACAACAGATTTTTCTGACTAATGTAGCCGTTTTCTCAATTTTA
GAAAAATTCTACTGTTTATAGAAAGAAGTTGATATAAACTTTGCGCAAGT
GAAATCACAAGTGTCATTTTTTCTTCTTCATTTTCAAAAAACTTTAAAAT
TTATCACACGTTTTCGTCGTTGATGTTCTAATATTATGCGAAATTTTCGA
CTTTAAGTCGTCTTGTTTTCTATCTATTTCTCCGATTGAGCCTCTGGTAC
AGCTGGATAAATACTGAAATGCGCCAAGTTCGGTGCGCACGTTCGACGAT
CCATTTCTAGTCATTTTAAAGTAATGGACGTTTTATTTGTCTTAATGAGT
AATTATAATGAAAACTGTTTTAAAACATTTCTAAAGCCTGCTTATTCTTT
AACCCAGCAAAATTAGTATTTAAAAATAGTGATTCGAGAATTTCGGATTT
TTTGTTTTTTAAATTTTGAAACTTTTTTATTCTTCAATACCATAGGTACA
AGAATTAATTGAAAAAGCAAATGAGTTCAAGGTAAGTGTCTGTAAATTTT
GATTTAGACGTTTAATCTTGTGCAATCTCGCTGACGCCTTAGAATTTGTA
AAACAGCGGGTTATGCTTTGTCTTTGGTACACTTAGTTTTAAGACACTTT
AAAAAAAGCTTTCATAAATGTTTATCGATACACACAATTTTGTGTATTTT
GCAGAATAAAGATGGTTATGGAGATATCAGGTGGCATTTCATTGGAAAAC
TTCAGCGAAATAAAGTCAACAATTTGTTAGGTAAGCATCCTTGAAACATT
AAATTTAGCGACGGCTACATTTGCTTGTTTTTTGATAAAGTCGTTAATAA
AAATGTTTTGTTCTTGATACGTTTGTCAACCCTTGGATTAAAAGGGATTG
GACTTCGTTTTACCGTCATTGCTTAGCGTCAAATGTAAAAAAATTACATC
AGGAGAAAGTTTGATTAGAATCATTTTCACTTTCAGGGGCACCAAACTTG
GAATGTATCCAGACAGTCGAAAGTATCAAGCTAGCCACAGCCATCAACAG
TTCGTGTCAGAAGAAATTGCAACCAGACGCTAAACTCAAAGTGTTTGCTC
AAGTCAACAGTAGTGGTGAAGAAGGTATGAAGAAAAAACATCTAATAACA
ACTTTTCACTATTGCACAAATGGACACAGGGGCGAGACGAATAAATCATC
CGGTTGGAACGTGAATGATTTTCCTACCCGAGTGAAATTCTGCATGTTCC
AAGGAATGAAATGCATTTTATACACCCAGTTGATTCACTTTCTACTGTGG
AAAAATTCTACTGTACTCGTAGACTGCATTCACTATTGGACTCGTGCTAC
CTATACTACCTCTTGAAAAGAATGTCAGACTTAAATATTCAATCATTTTG
ATTCAAACATTTTACGTTATCTTCGGACTCTTCTTGAAAATCTTGGATAA
CAAAAAAGACTTTAGTGGTCTACAAGTGAACTACAGTACTGGATACTCCT
TGAAAAAGGAGGTCAACTAAATCTTTTTAACTTTCGTTTTTAAGCAAAAT
CTGGTTGTGAACCGAGCGAATGTTCAGAGCTGGTACGTCACATCATAACC
CAATGTGATTGTCTTCATTTCGAAGGTCTAATGACAATCGGATCTTTCTC
ACATGATTATTCAGCGGGACCGAATCCTGATTTCGAGGTATGTTTTCTTT
TCGACTTTTGCATCAGTAAAGTCAGCCTCATTCAATTAAAGGATCTACTG
TACCTTGACGATGTCGTTAAAATTGCCATTCGCTACTATCAGGGGGATTC
CTGGTATGTAAGTAAGTCTGCGACCGTAGTCGGAGGCGACGCGAAGGCTC
CTCTTTCAATAGTAGGGGAGGGCTCCACTATTGCTGAGCATCAAGCATAG
AGGGCTCATGTAGGATTTTGGAGAATCTTTGGTATGACCTGGCTGAGGGT
TGAACCCACAACCTTGCGCATCGTAGCCGGATGCCCTACCACTGCACTAC
GGATGATAAGACAGATACAAGTTAAGTTTCTGACTAGAAGTTACAGGTAC
AGTCAAGTCTCTACAGGGTGTCCGAAAAGTGTGGTACAAATTTTAATTAT
TTATCTATTTATGGGTTTAAATAGATAAATAATTAAAATTTGTACCACAC
TTTTCGGACACCCTGTAGAGACTTGACGGTACCTGTAACTTCTAGTCAGA
AACTTAACTTGTATCTGTCTTATCATAAAGATGTTATATTATCAGATTGA
TTTTTCTGGATAAAAACTGTGTTTAATGAAGGAAGGTACAAACTCATGAA
TATTGGTTTCTTTTGACTAAATAACTAAAAGTGTAACAACTTTATCTTCC
CAGTGTTTGGTACGGTGTCGTGATCAATTGGAAAGTGACTTAGAACTAAA
AAAAGAAGACATCAAATTGAGTATGGGAATGTCAAATGATTACCAACAAG
CTGTAAGTCTCGTTCTTTCTCTCAGCGTGATCGTCTACAATCGGCGCCGA
AATATTTGGCACAAAAGGGGAATTCCATCAAAACTTTAAAACCGCAAATG
ATTTTTAAGCGCTTTGAAGTACAGCTCGGAAGTAGAGTTTTAACGTTAGA
CTTATAACTTGGGACCTTAGGATCTCAGGATCTAAAAGCTCAAAAATGTT
CCAATATGGCTGAGAACATAGCCTGGAAGGCACGTGACCCTTCCAAAATC
GAAATATTCAATGAAAGAAAGTGGAAGTACTGAAATTGCGATTCTCGCCC
GAGCTTTAAACTCTGAAAAACGTTAAAATACCCTAATTTGCTAATATATT
TCGGTACTGATTGTAGTCTGACTCGCCGTCCTATGCCGTCTTTGTCCATA
AGAAGATTGTCCATGCAAGTTGTCTGTACACAAACCCTGTTCTACGGCTA
ATTTCAAAATTCATTGCCGTAGAGGGTCTGTTGTCATTGTCTTTTGTCAT
TTGAGATTTTTCAAACCGACCGCTGGAGTGTTTGTGAGAGAGGGGAGACG
ACGAGATAAGTGTTGATATTTACAAATCCTACTTCATCGCAGAGGTCGGA
GACTGGGAATTTTTTTTTATCAAACAGACAATGCGCACAGAGTGTACTAC
GAAACGATAAACGTGAGATACACTCTGGTACAGAGAACTCTGCAAGGGGA
TGAGAGCTGCTTTTCTTTCTTTTGAAACAAATACTGGCGCTGTAGCTGCT
CAAAATGTTTCAAATTTTCATCTAAAAGAAAGAAATTGGCACTGAATCTG
TAGCACTCGTTAATAAATTACTTCTTTCATTTTAGATTTTAGCTGGTGCG
ACAACTGTCCGCGTTGGAAGTACTATTTTCGGACAAAGAGAAGTTAAGAA
ATGATCATTCATTGTATTAAAATCGTTGGTTGGATTTGTATGTTGGGGTC
TTATGGTCACTCTAAACTCAAGTCAAAATGTTGTACTTTTTGGAGTTTCG
AAGATCTCTGTTTCGGGGACTGTATAAAGATATTATACTTTGCTGATATT
GTTTCTAGTCGAATGGTTTTTGGGTGAAAATTAATAGCAGCTTTTCTTAA
ACTTTGTAAACCCAAATAGAGTATACTAAATGTCCTGGTTTTGCATGGTT
TTACTGGGTATCTTTTACGTAAATACCTGTCCATTAATTTTGAGTGGTTG
GGCTTGAAATGACTTTTCTCTAAAGTGAGCGCATTTTATGTTTTGAAAAT
TAACTTTGTTACTAATTCGATTTTTTGAAATCACTCAATAGAATGAATGT
TATGTCACAGATGATCATAGAATCGCTTAGAATAGATAAAGTTTTTTTTT
AAGACGGTACCCCAAAGCGTCCGCTTGCTCAGTTCCGGAAATATTGCTAG
TCAAAGATGATTCGGTATTTCGTCAAGTACCCAGCTGACACACAACGTTG
TTTATACGTTCATCTAATGTTATATGGACGTAGTGAACGTTAAATAAACG
TTGAAACAACGTTGTGTGCTAACTGGGTAAAGAAACAGTTGATTCGTGAT
CTTATTTTATATTTGTTTGAAATTCTTTAGCGTTAATCATATCGAGTTCT
ATAAAGATATTTTCAGTTATTCATAGAATATTGTTAAATTTATATAGAGT
ATATTAAATTTTGTAAAAATTTAAGTGTAAAAATAAAA

Coding sequence (CDS) from alignment at sc0000087:546724..557161-

>TCONS_00008790 ID=TCONS_00008790|Name=TCONS_00008790|organism=Clytia hemisphaerica|type=CDS|length=4284bp|location=Sequence derived from alignment at sc0000087:546724..557161- (Clytia hemisphaerica)
ATTTTAGCTGGTGCGACAACTGTCCGCGTTGGAAGTACTATTTTCGGACA
AAGAGAAGTTAAGAAATGATGTTTGGTACGGTGTCGTGATCAATTGGAAA
GTGACTTAGAACTAAAAAAAGAAGACATCAAATTGAGTATGGGAATGTCA
AATGATTACCAACAAGCTCAAAATCTGGTTGTGAACCGAGCGAATGTTCA
GAGCTGGTACGTCACATCATAACCCAATGTGATTGTCTTCATTTCGAAGG
TCTAATGACAATCGGATCTTTCTCACATGATTATTCAGCGGGACCGAATC
CTGATTTCGAGGGGCACCAAACTTGGAATGTATCCAGACAGTCGAAAGTA
TCAAGCTAGCCACAGCCATCAACAGTTCGTGTCAGAAGAAATTGCAACCA
GACGCTAAACTCAAAGTGTTTGCTCAAGTCAACAGTAGTGGTGAAGAAGA
ATAAAGATGGTTATGGAGATATCAGGTGGCATTTCATTGGAAAACTTCAG
CGAAATAAAGTCAACAATTTGTTAGGTACAAGAATTAATTGAAAAAGCAA
ATGAGTTCAAGATGATTGAAGATGCACATGCTAATGGTCAAAGAGATTTC
GGTGAGAACTATATTTTAGCTGGTGCGACAACTGTCCGCGTTGGAAGTAC
TATTTTCGGACAAAGAGAAGTTAAGAAATGATGTTTGGTACGGTGTCGTG
ATCAATTGGAAAGTGACTTAGAACTAAAAAAAGAAGACATCAAATTGAGT
ATGGGAATGTCAAATGATTACCAACAAGCTCAAAATCTGGTTGTGAACCG
AGCGAATGTTCAGAGCTGGTACGTCACATCATAACCCAATGTGATTGTCT
TCATTTCGAAGGTCTAATGACAATCGGATCTTTCTCACATGATTATTCAG
CGGGACCGAATCCTGATTTCGAGGGGCACCAAACTTGGAATGTATCCAGA
CAGTCGAAAGTATCAAGCTAGCCACAGCCATCAACAGTTCGTGTCAGAAG
AAATTGCAACCAGACGCTAAACTCAAAGTGTTTGCTCAAGTCAACAGTAG
TGGTGAAGAAGAATAAAGATGGTTATGGAGATATCAGGTGGCATTTCATT
GGAAAACTTCAGCGAAATAAAGTCAACAATTTGTTAGGTACAAGAATTAA
TTGAAAAAGCAAATGAGTTCAAGATGATTGAAGATGCACATGCTAATGGT
CAAAGAGATTTCGGTGAGAACTATATTTTAGCTGGTGCGACAACTGTCCG
CGTTGGAAGTACTATTTTCGGACAAAGAGAAGTTAAGAAATGATGTTTGG
TACGGTGTCGTGATCAATTGGAAAGTGACTTAGAACTAAAAAAAGAAGAC
ATCAAATTGAGTATGGGAATGTCAAATGATTACCAACAAGCTCAAAATCT
GGTTGTGAACCGAGCGAATGTTCAGAGCTGGTACGTCACATCATAACCCA
ATGTGATTGTCTTCATTTCGAAGGTCTAATGACAATCGGATCTTTCTCAC
ATGATTATTCAGCGGGACCGAATCCTGATTTCGAGGGGCACCAAACTTGG
AATGTATCCAGACAGTCGAAAGTATCAAGCTAGCCACAGCCATCAACAGT
TCGTGTCAGAAGAAATTGCAACCAGACGCTAAACTCAAAGTGTTTGCTCA
AGTCAACAGTAGTGGTGAAGAAGAATAAAGATGGTTATGGAGATATCAGG
TGGCATTTCATTGGAAAACTTCAGCGAAATAAAGTCAACAATTTGTTAGG
TACAAGAATTAATTGAAAAAGCAAATGAGTTCAAGATGATTGAAGATGCA
CATGCTAATGGTCAAAGAGATTTCGGTGAGAACTATATTTTAGCTGGTGC
GACAACTGTCCGCGTTGGAAGTACTATTTTCGGACAAAGAGAAGTTAAGA
AATGATGTTTGGTACGGTGTCGTGATCAATTGGAAAGTGACTTAGAACTA
AAAAAAGAAGACATCAAATTGAGTATGGGAATGTCAAATGATTACCAACA
AGCTCAAAATCTGGTTGTGAACCGAGCGAATGTTCAGAGCTGGTACGTCA
CATCATAACCCAATGTGATTGTCTTCATTTCGAAGGTCTAATGACAATCG
GATCTTTCTCACATGATTATTCAGCGGGACCGAATCCTGATTTCGAGGGG
CACCAAACTTGGAATGTATCCAGACAGTCGAAAGTATCAAGCTAGCCACA
GCCATCAACAGTTCGTGTCAGAAGAAATTGCAACCAGACGCTAAACTCAA
AGTGTTTGCTCAAGTCAACAGTAGTGGTGAAGAAGAATAAAGATGGTTAT
GGAGATATCAGGTGGCATTTCATTGGAAAACTTCAGCGAAATAAAGTCAA
CAATTTGTTAGGTACAAGAATTAATTGAAAAAGCAAATGAGTTCAAGATG
ATTGAAGATGCACATGCTAATGGTCAAAGAGATTTCGGTGAGAACTATAT
TTTAGCTGGTGCGACAACTGTCCGCGTTGGAAGTACTATTTTCGGACAAA
GAGAAGTTAAGAAATGATGTTTGGTACGGTGTCGTGATCAATTGGAAAGT
GACTTAGAACTAAAAAAAGAAGACATCAAATTGAGTATGGGAATGTCAAA
TGATTACCAACAAGCTCAAAATCTGGTTGTGAACCGAGCGAATGTTCAGA
GCTGGTACGTCACATCATAACCCAATGTGATTGTCTTCATTTCGAAGGTC
TAATGACAATCGGATCTTTCTCACATGATTATTCAGCGGGACCGAATCCT
GATTTCGAGGGGCACCAAACTTGGAATGTATCCAGACAGTCGAAAGTATC
AAGCTAGCCACAGCCATCAACAGTTCGTGTCAGAAGAAATTGCAACCAGA
CGCTAAACTCAAAGTGTTTGCTCAAGTCAACAGTAGTGGTGAAGAAGAAT
AAAGATGGTTATGGAGATATCAGGTGGCATTTCATTGGAAAACTTCAGCG
AAATAAAGTCAACAATTTGTTAGGTACAAGAATTAATTGAAAAAGCAAAT
GAGTTCAAGATGATTGAAGATGCACATGCTAATGGTCAAAGAGATTTCGG
TGAGAACTATATTTTAGCTGGTGCGACAACTGTCCGCGTTGGAAGTACTA
TTTTCGGACAAAGAGAAGTTAAGAAATGATGTTTGGTACGGTGTCGTGAT
CAATTGGAAAGTGACTTAGAACTAAAAAAAGAAGACATCAAATTGAGTAT
GGGAATGTCAAATGATTACCAACAAGCTCAAAATCTGGTTGTGAACCGAG
CGAATGTTCAGAGCTGGTACGTCACATCATAACCCAATGTGATTGTCTTC
ATTTCGAAGGTCTAATGACAATCGGATCTTTCTCACATGATTATTCAGCG
GGACCGAATCCTGATTTCGAGGGGCACCAAACTTGGAATGTATCCAGACA
GTCGAAAGTATCAAGCTAGCCACAGCCATCAACAGTTCGTGTCAGAAGAA
ATTGCAACCAGACGCTAAACTCAAAGTGTTTGCTCAAGTCAACAGTAGTG
GTGAAGAAGAATAAAGATGGTTATGGAGATATCAGGTGGCATTTCATTGG
AAAACTTCAGCGAAATAAAGTCAACAATTTGTTAGGTACAAGAATTAATT
GAAAAAGCAAATGAGTTCAAGATGATTGAAGATGCACATGCTAATGGTCA
AAGAGATTTCGGTGAGAACTATATTTTAGCTGGTGCGACAACTGTCCGCG
TTGGAAGTACTATTTTCGGACAAAGAGAAGTTAAGAAATGATGTTTGGTA
CGGTGTCGTGATCAATTGGAAAGTGACTTAGAACTAAAAAAAGAAGACAT
CAAATTGAGTATGGGAATGTCAAATGATTACCAACAAGCTCAAAATCTGG
TTGTGAACCGAGCGAATGTTCAGAGCTGGTACGTCACATCATAACCCAAT
GTGATTGTCTTCATTTCGAAGGTCTAATGACAATCGGATCTTTCTCACAT
GATTATTCAGCGGGACCGAATCCTGATTTCGAGGGGCACCAAACTTGGAA
TGTATCCAGACAGTCGAAAGTATCAAGCTAGCCACAGCCATCAACAGTTC
GTGTCAGAAGAAATTGCAACCAGACGCTAAACTCAAAGTGTTTGCTCAAG
TCAACAGTAGTGGTGAAGAAGAATAAAGATGGTTATGGAGATATCAGGTG
GCATTTCATTGGAAAACTTCAGCGAAATAAAGTCAACAATTTGTTAGGTA
CAAGAATTAATTGAAAAAGCAAATGAGTTCAAGATGATTGAAGATGCACA
TGCTAATGGTCAAAGAGATTTCGGTGAGAACTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004926XLOC_004926Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008790-proteinTCONS_00008790-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008790-exon-sc0000087-1575043694:557025..557161TCONS_00008790-exon-sc0000087-1575043694:557025..557161Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1575043694:550331..550366TCONS_00008790-exon-sc0000087-1575043694:550331..550366Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1575043694:550082..550157TCONS_00008790-exon-sc0000087-1575043694:550082..550157Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1575043694:549738..549875TCONS_00008790-exon-sc0000087-1575043694:549738..549875Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1575043694:549175..549317TCONS_00008790-exon-sc0000087-1575043694:549175..549317Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1575043694:548410..548508TCONS_00008790-exon-sc0000087-1575043694:548410..548508Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1575043694:546724..547576TCONS_00008790-exon-sc0000087-1575043694:546724..547576Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1510915933:557025..557161TCONS_00008790-exon-sc0000087-1510915933:557025..557161Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1510915933:550331..550366TCONS_00008790-exon-sc0000087-1510915933:550331..550366Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1510915933:550082..550157TCONS_00008790-exon-sc0000087-1510915933:550082..550157Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1510915933:549738..549875TCONS_00008790-exon-sc0000087-1510915933:549738..549875Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1510915933:549175..549317TCONS_00008790-exon-sc0000087-1510915933:549175..549317Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1510915933:548410..548508TCONS_00008790-exon-sc0000087-1510915933:548410..548508Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1510915933:546724..547576TCONS_00008790-exon-sc0000087-1510915933:546724..547576Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1491911889:557025..557161TCONS_00008790-exon-sc0000087-1491911889:557025..557161Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1491911889:550331..550366TCONS_00008790-exon-sc0000087-1491911889:550331..550366Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1491911889:550082..550157TCONS_00008790-exon-sc0000087-1491911889:550082..550157Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1491911889:549738..549875TCONS_00008790-exon-sc0000087-1491911889:549738..549875Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1491911889:549175..549317TCONS_00008790-exon-sc0000087-1491911889:549175..549317Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1491911889:548410..548508TCONS_00008790-exon-sc0000087-1491911889:548410..548508Clytia hemisphaericaexon
TCONS_00008790-exon-sc0000087-1491911889:546724..547576TCONS_00008790-exon-sc0000087-1491911889:546724..547576Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:546724..557161 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.494	14.7602	10.318	9.01057	0.000183562	8.35127e-05	0.000272946	3.88255	8.79771	6.6259	7.19159	8.25063	8.8825	7.68206	6.75517	3.81685	14.1961	15.4522	7.17097	8.91719	14.64	15.0289	11.2215	12.0862	6.93044	9.29215	14.8502	10.2364	14.1575	10.6623
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011078PyrdxlP_homeostasis
IPR029066PLP-binding_barrel
IPR001608Ala_racemase_N
Blast
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BLAST of TCONS_00008790 vs. Swiss-Prot (Human)
Match: PLPHP (Pyridoxal phosphate homeostasis protein OS=Homo sapiens GN=PROSC PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.590e-74
Identity = 115/216 (53.24%), Postives = 154/216 (71.30%), Query Frame = 3 
Query:   48 PCLIAVSKTKPSTMIEDAHANGQRDFGENYVQELIEKANEFKNKDGYGDIRWHFIGKLQRNKVNNLLGAPNLECIQTVESIKLATAINSSCQKKLQPDAKLKVFAQVNSSGEEAKSGCEPSECSELVRHIITQCDCLHFEGLMTIGSFSHDYSAGPNPDFECLVRCRDQLESDLELKKEDIKLSMGMSNDYQQAILAGATTVRVGSTIFGQREVKK 695
            P L+AVSKTKP+ M+ +A+ +GQR FGENYVQEL+EKA+  K      +I+WHFIG LQ+  VN L+  PNL  ++TV+S+KLA  +NSS Q+K  P+ +LKV  Q+N+SGEE+K G  PSE   +V HI  +C  L F GLMTIGSF HD S GPNPDF+ L+  R++L   L +  + ++LSMGMS D+Q A+  G+T VR+GSTIFG+R+  K
Sbjct:   40 PRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNSSWQRKGSPE-RLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDYSK 254
The following BLAST results are available for this feature:
BLAST of TCONS_00008790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLPHP1.590e-7453.24Pyridoxal phosphate homeostasis protein OS=Homo sa... [more]
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