TCONS_00008788 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008788
Unique NameTCONS_00008788
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008788 ID=TCONS_00008788|Name=TCONS_00008788|organism=Clytia hemisphaerica|type=transcript|length=1387bp
ATTGAAAaaggtaaaagaaaaattaaaaacacaaCATCGATTTCAACTTC
AACAAAATCAGTGCACCAGCAATACATGACCAAGAGAGACAGTATCAACA
TCACTTAATATGAAACTTGAGAACGGTAGAATCGATTTGGATTCACCAAG
ATGGCCACAAGACACATTTTCTGGccgttttcaacatttttggtcAATCA
CTGATTGGAGAAATGGTTTACATTCTGAACAAACTTTAGATGATTCCAAA
AAACTTCTTGAGTTATACAGATCAGGTCTAGAACCACCAGGTACGACTGA
GGAACAGATCTGGCAAGCCAAAAGGTTATATGAGTCAGCATTCCATCCTG
ATACTGGTGAAAAGATGAATGTGATTGGTCGAATGTCGTTCCAGGTCCCT
GGAGGAATGTTGATCACTGGTGGTATGCTCCAATATTACAAAACTGTACC
ACAAGTAGTTTTATGGCAATGGATCAATCAATCGTTCAATGCTCTTGTCA
ATTTCACCAACAGAAATGCAAAATCTGATATCACCAATAAACAAATAATG
ACGGCATATGTATCAGCAACAAGTGGAGCCATGGCTGTTGCTTTAGGTTT
GAATTCACTGGTTAAGGCAGCACCACCATTGATGGCCCGCTACGTTCCTT
TTGCGGCTGTGGCGGCCGCCAATTGTATAAACATACCTTTGATGAGACAG
AGTGAGATTCTGAACGGAATTAGAGTGTACAGTGAAAACGGCGAAGAGTT
AGGATCGTCACAAAGGGCTGCTTACACTAGCATTGTACAAGTCACGGCTT
CTAGAATCACAATGGCTGCACCAGGAATGTTACTAGCACCAATCATCATG
GAGAAACTTGAAACATACAACTGGATGAAACGCATCAAACCATTACATGG
ACCCATCCAGATCTTATTATGTGGTATCAGtttgactTTGATGGTACCTG
TAGCTTGCTCCATCTTCCCTCAAAGGAGCTCACTCTCCATTGGTTCATTA
GAAAAAGAATTACAGGAGAACATTATGACGAGAAGTGATGCCTCTAATAT
CCAACGAGTCTATTTCAATAAAGGCTTGTAAAAGCAAAATGCATTGCGAA
CTTTAATTGCTGGCAATACATTTTAGAAACGAATGAACCGTGAAGCTTCC
GGTAGTGTAAACTTTGAAGCATTTTTTGAGAGGTAGGGGATTTACTTTAC
CAAATGGAGGACCCACCCTTTTTATCGGGTTGAATATATCAAAAGATTTT
GTACTgtacattttttaaaacataattttttttagaatttttatgaaaaa
tgatttttagaaatttatagatttttctttggtttaGCAATAGAATTAAT
GAAATAAAAGGGATATATTTTTTTACTCGTtgcaaat
Run BLAST on NCBI

protein sequence of TCONS_00008788-protein

>TCONS_00008788-protein ID=TCONS_00008788-protein|Name=TCONS_00008788-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MKLENGRIDLDSPRWPQDTFSGRFQHFWSITDWRNGLHSEQTLDDSKKLL
ELYRSGLEPPGTTEEQIWQAKRLYESAFHPDTGEKMNVIGRMSFQVPGGM
LITGGMLQYYKTVPQVVLWQWINQSFNALVNFTNRNAKSDITNKQIMTAY
VSATSGAMAVALGLNSLVKAAPPLMARYVPFAAVAAANCINIPLMRQSEI
LNGIRVYSENGEELGSSQRAAYTSIVQVTASRITMAAPGMLLAPIIMEKL
ETYNWMKRIKPLHGPIQILLCGISLTLMVPVACSIFPQRSSLSIGSLEKE
LQENIMTRSDASNIQRVYFNKGL
Run BLAST on NCBI

transcript from alignment at sc0000087:492832..497889-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008788 ID=TCONS_00008788|Name=TCONS_00008788|organism=Clytia hemisphaerica|type=transcript|length=5058bp|location=Sequence derived from alignment at sc0000087:492832..497889- (Clytia hemisphaerica)
ATTGAAAAAGGTAAAAGAAAAATTAAAAACACAACATCGATTTCAACTTC
AACAAAATCAGTGCACCAGCAATACATGACCAAGAGAGACAGTATCAACA
TCACTTAATATGAAACTTGAGAACGGTAGAATCGATTTGGATTCACCAAG
ATGGCCACAAGACACATTTTCTGGCCGTTTTCAACATTTTTGGTCAATCA
CTGATTGGAGAAATGGTTTACATTCTGAACAAACTTTAGATGATTCCAAA
AAACTTCTTGAGTTATACAGGTATTCTACTGGCAAAGCTATGTATGAAGT
ACAATTAATCTCTTTTTTTAATACTGTAAATTGCTTTCCAGGCTTCTTAT
TATTTCATCATTTGTCTAGAATTGTTCTTGTTTTTTTTTATGGTAAATGA
TTTAATCATATGGTATGGATAAAAATAACAGAAAAGGTATGATACCTCAG
CTTTGCGCCTTGAATAAGATTAAGTTTTAAAGTGCAAGTTAACTGATTTA
TACAGAGAAAAACTTTCTAAATCATAATAGTTCTTAAAACTTATTTGCAG
ATCAGGTCTAGAACCACCAGGTACGACTGAGGAACAGATCTGGCAAGCCA
AAAGGTTATATGAGTCAGCATTCCATCCTGATACTGGTGAAAAGATGAAT
GTGATTGGTCGAATGTCGTTCCAGGTCCCTGGAGGAATGTTGATCACTGG
TGGTATGCTCCAATATTACAAGTAAGGCTTCTCTTTCTTGAATCATTGCA
GGCTACGTCATATCTTCCTTAGTTTCGAGCGTAGAACTCCTACTCTAAAA
GTAAGGCCTAAAATCCTGTACCTGTCTTTTGTGTAGACTAGAATCATTGT
GGATTAATTTCTGATTGTGAACCAAACAGGCACACAATTGTTTTTGAACG
TTCATATAACTTTACATGGATGTTAGAGACGTTAGAAGGATGCTGTTCTG
ACGTTCGATGGGGATAACTTAACTTAATTTGTTCTCTAAAAAAATATAGT
AGTGTCTTTAGATTTTTGTATTCAAACCCGTTGATAAGTCATTCTCTAAA
ATTGTCCATTAGAACTGTACCACAAGTAGTTTTATGGCAATGGATCAATC
AATCGTTCAATGCTCTTGTCAATTTCACCAACAGAAATGCAAAATCTGAT
ATCACCAATAAGTAAGCAATTTACTACCGCTTGCTATCTTCAACCTTACC
TTTTTATACCAAACATGGGTTGACGTCAATTTTCTTATATTGACGCTTTT
GTAAAACTTCCACTAGCGCGAGGTGGATGTTTTTTTTTGGACAAGGTTTT
TTCTAATTAATGAAGGAGAACGGCTGCTATTAAAAAACCTTTTCTTTCGA
CAGTCAATTAATTCCAAGTATCTTCCAAGTTTTTAAATTTTGGCTTTAGG
GGCGCGTGAACCCCTCCATCTTGCAGCTATTCCAGGATCAAGGTTTCTCT
GAAAAATCCTTCTTGTCAAACGGTGTATTTTTCTATCTTTTATGTTTTTG
TAGACAAATAATGACGGCATATGTATCAGCAACAAGTGGAGCCATGGCTG
TTGCTTTAGGTTTGAATTCACTGGTTAAGGTAAGTCAGCGTTGGAGTCTT
TATAAACTGAGACTGAAGTATTGCCAGTTTCTTCCAGGCATCTATGTCTT
GCCAGAGATTTCGAGTCTTTCATTCAATATTATAGAGTCAATTTTCTACT
ATTACTAAGAATCTTTTCAACATTTTCTAAAAATAGATAACTTTTCAACA
ACATTATACTAATAAGCTCAAGGTTGGTTTTCGACTTCTGTACTTTTTTC
AAATTACAGCAATAAATTTTCTTGGTCCTTCTTTGGAGTTGCTTAATTTT
CCCATGGAATAATTAAGTAAAACATAAACACATATGCCTACCCCTTTAGC
ATTTTATAGTAGCTGTCTGATATTTAATCGCCAATTGATTATATAATTGA
CACTCTATAATTCGACGTTCTACTACGATATGCTCGTAAACGACGCTATA
CTTTTCCATACACTCCGTTTTTCGATAAAAATCCAATTCCCCTCGAAAAG
TGAATTATAGAGCGTCAACTGTAATTCAAATTAATCTTTTCTCTTCAAGG
CAGCACCACCATTGATGGCCCGCTACGTTCCTTTTGCGGCTGTGGCGGCC
GCCAATTGTATAAACATACCTTTGATGAGACAGAGTGAGATTCTGAACGG
AATTAGAGTGTACAGTGAAAACGGCGAAGAGTTAGGATCGTCACAAAGGG
CTGCTTACACTAGCATTGTACAAGTCACGGCTTCTAGAATCACAATGGCT
GCACCAGGAATGTGTAAGAAGATTATCTTTCGTGCATTCTGATAAGCTTT
TTCATAAATCATTTTGAGTGTAACAAATGCCTCATTTTGAAGCCATTAAC
AAGGGGATTAAATCTTTGAGTGTTACTTTTATAAATAGAGTCAACCTCTT
ATCGTTTTCAAAATATTTGTAATAAACTGATTCCCAGATGAGTTACTAAT
AATCAATTACCTTAGAAACTTTTTGAAAGCGAGGCAAGCGTTGTTCGTGA
TGCATTTTATGAAAATGTCTGCTCCCCACGTATAATTCACTTCGCTTTTT
TAATAAGTTTAGCCTGCCAGCTGAACACCAGCACCATTTTGACGTTGACT
CGACATTATATCAAACTACTTTCTCCATAATGTTACAACTGTCTAGAACG
AACGTCTTCCTAAAAACTTCAAACATCTACAACCAATGATCATTTTCAAC
AGTACATTTTACGTTCGTTCACATGTTCACAATCACGTGAAAATAGGTTG
GCTGATTACCGTATTACTTCGAATTAGTGCTCCCTTCTTTTGAAGGCCTC
CCTCGAATAAACACCCCTCCTAAAATCCAAAAAATAAAAAAATAAACGCC
CGGGGCGTTAATTCGAAGTAATACGGTATAAGGAATATCACGTGGTTCTA
TGCTTAGATTTCCAGATATCATTGGGCTTTACTCCTTTTATTACAGTACT
AGCACCAATCATCATGGAGAAACTTGAAACATACAACTGGATGAAAGTAT
GATTCTTATCTTTATGTTTTGTTAAAAAAACTTTAAAAATAATCTTAAGA
TATTGTATCTTATTTTGGGGCCTCGTATTCATAGAGAAGCTCAACCTACT
GAACTCTCCATTAGTTTCTAAAGATTTAAGATTTAAGCATTCAATGATAT
TTCCAGGGGTATTTCAAACTCTGTAAGATGGGACCTCGTCCTTCTCCTGA
TGGGGATTGGGCGCTAAAAGCTCACCCCTACACTGGCACCATTTTCCCCT
GAACTCTATTATTAGCAACTTTTATTTAGGCGACACCTAAATGATAGGAC
ACCCCTGTGTCACAGAATCCGCTGGGACCCCAGCCCCACTGGAAAGATTG
ACAAAAATTTCGTCCCCGGTGGGAAAATACCCTAAAATTTCACTTGGAAA
CTGACTTTGATTTTATCCCCATTCAAAATTCAATGTTTAAAAATTGCACT
CCAAACCCATCCCCACTAGATTTTTAACCTTGGAAAGATAGAATTTCTAT
CCCCATTGGTTTTTCTATCTATAGATTATTGCTATCTCCACTGAGGAAAA
AAGTTCCACCGGGGCTGTGAGACAGGGGTGTGATTTCTCTACAACTTGCG
CCTAAGCTAGGGAACACGGTGTAGGCTATACGGTTGACTCGATCTTCAAG
GAACCATGAATTTTCTTTGAATAAAAGAAAGATTTGAACAATTACGAGGA
GTATTTCACACGACTCTCCAGCTGACGAAAAAATGCATCAGGTCTAATTA
TAAAGGTTTAAATTAGTGAAACTCTGTAATATCAAAAACATTTTTTACTC
ATCATCTTTTAGCGCATCAAACCATTACATGGACCCATCCAGATCTTATT
ATGTGGTATCAGGTGTGAATTTGTCATTTCTTGAGATCATAATCATTCGA
TTGTAAATGTACATTATGTTTTCTATTTCACCTTTCGGAACTAAACTACT
ATGTGAAGTGGTGTGGAAACGACCAATCACTACAGTGGAATCTATATAAC
TCGAACCCGCATGGGGAACTCAAATTTCTTCGAATTATGGAAATCTCTTG
TTATTAAGTAAGGGTTAAAAGGCATTGTTTACTGGAGGGACCATAAAACT
TGTTATAGAGTTATAGAGGTTTGAGTTTCACTATTTTACTATTAGAAGGT
CTGAAGTTTCTCCCTGAAATATACAACGCTTGAAAAACGAAATTGAAAAA
AAATTTCGGACTAATGCTTACTGTACCAATTTTTTTGACATGCTTTATAT
TCCTCAATTTTTAGTTTGACTTTGATGGTACCTGTAGCTTGCTCCATCTT
CCCTCAAAGGAGGTATGTATCATAAATCACCGGATCTGAATTTTTCAAGA
TTAATATACGTAGACATCTCCAGGCTTTTGGTGCGCATAGTGATATAAAC
TGAAAAATTCAATATTCGAATCAAGAGCATTGCGCATATATCCCGAAGAG
TAACAGTAGTTTTACACTCGAAACGAAGGAAGATATGACATAGCCTAAGA
CAAGACTTTGTTCTTTTGTTCTTTTATATTGTTTGATAAAATCTTTTAGG
AACAAGTCATTTTCCATCACCAAATTCAATCTTTTCCTTTTCATTTCAGC
TCACTCTCCATTGGTTCATTAGAAAAAGAATTACAGGAGAACATTATGAC
GAGAAGTGATGCCTCTAATATCCAACGAGTCTATTTCAATAAAGGCTTGT
AAAAGCAAAATGCATTGCGAACTTTAATTGCTGGCAATACATTTTAGAAA
CGAATGAACCGTGAAGCTTCCGGTAGTGTAAACTTTGAAGCATTTTTTGA
GAGGTAGGGGATTTACTTTACCAAATGGAGGACCCACCCTTTTTATCGGG
TTGAATATATCAAAAGATTTTGTACTGTACATTTTTTAAAACATAATTTT
TTTTAGAATTTTTATGAAAAATGATTTTTAGAAATTTATAGATTTTTCTT
TGGTTTAGCAATAGAATTAATGAAATAAAAGGGATATATTTTTTTACTCG
TTGCAAAT

Coding sequence (CDS) from alignment at sc0000087:492832..497889-

>TCONS_00008788 ID=TCONS_00008788|Name=TCONS_00008788|organism=Clytia hemisphaerica|type=CDS|length=8748bp|location=Sequence derived from alignment at sc0000087:492832..497889- (Clytia hemisphaerica)
CTCACTCTCCATTGGTTCATTAGAAAAAGAATTACAGGAGAACATTATGA
CGAGAAGTGATGCCTCTAATATCCAACGAGTCTATTTCAATAAAGGCTTG
TAATTTGACTTTGATGGTACCTGTAGCTTGCTCCATCTTCCCTCAAAGGA
GCGCATCAAACCATTACATGGACCCATCCAGATCTTATTATGTGGTATCA
GTACTAGCACCAATCATCATGGAGAAACTTGAAACATACAACTGGATGAA
AGCAGCACCACCATTGATGGCCCGCTACGTTCCTTTTGCGGCTGTGGCGG
CCGCCAATTGTATAAACATACCTTTGATGAGACAGAGTGAGATTCTGAAC
GGAATTAGAGTGTACAGTGAAAACGGCGAAGAGTTAGGATCGTCACAAAG
GGCTGCTTACACTAGCATTGTACAAGTCACGGCTTCTAGAATCACAATGG
CTGCACCAGGAATGTACAAATAATGACGGCATATGTATCAGCAACAAGTG
GAGCCATGGCTGTTGCTTTAGGTTTGAATTCACTGGTTAAGAACTGTACC
ACAAGTAGTTTTATGGCAATGGATCAATCAATCGTTCAATGCTCTTGTCA
ATTTCACCAACAGAAATGCAAAATCTGATATCACCAATAAATCAGGTCTA
GAACCACCAGGTACGACTGAGGAACAGATCTGGCAAGCCAAAAGGTTATA
TGAGTCAGCATTCCATCCTGATACTGGTGAAAAGATGAATGTGATTGGTC
GAATGTCGTTCCAGGTCCCTGGAGGAATGTTGATCACTGGTGGTATGCTC
CAATATTACAAATGAAACTTGAGAACGGTAGAATCGATTTGGATTCACCA
AGATGGCCACAAGACACATTTTCTGGCCGTTTTCAACATTTTTGGTCAAT
CACTGATTGGAGAAATGGTTTACATTCTGAACAAACTTTAGATGATTCCA
AAAAACTTCTTGAGTTATACAGCTCACTCTCCATTGGTTCATTAGAAAAA
GAATTACAGGAGAACATTATGACGAGAAGTGATGCCTCTAATATCCAACG
AGTCTATTTCAATAAAGGCTTGTAATTTGACTTTGATGGTACCTGTAGCT
TGCTCCATCTTCCCTCAAAGGAGCGCATCAAACCATTACATGGACCCATC
CAGATCTTATTATGTGGTATCAGTACTAGCACCAATCATCATGGAGAAAC
TTGAAACATACAACTGGATGAAAGCAGCACCACCATTGATGGCCCGCTAC
GTTCCTTTTGCGGCTGTGGCGGCCGCCAATTGTATAAACATACCTTTGAT
GAGACAGAGTGAGATTCTGAACGGAATTAGAGTGTACAGTGAAAACGGCG
AAGAGTTAGGATCGTCACAAAGGGCTGCTTACACTAGCATTGTACAAGTC
ACGGCTTCTAGAATCACAATGGCTGCACCAGGAATGTACAAATAATGACG
GCATATGTATCAGCAACAAGTGGAGCCATGGCTGTTGCTTTAGGTTTGAA
TTCACTGGTTAAGAACTGTACCACAAGTAGTTTTATGGCAATGGATCAAT
CAATCGTTCAATGCTCTTGTCAATTTCACCAACAGAAATGCAAAATCTGA
TATCACCAATAAATCAGGTCTAGAACCACCAGGTACGACTGAGGAACAGA
TCTGGCAAGCCAAAAGGTTATATGAGTCAGCATTCCATCCTGATACTGGT
GAAAAGATGAATGTGATTGGTCGAATGTCGTTCCAGGTCCCTGGAGGAAT
GTTGATCACTGGTGGTATGCTCCAATATTACAAATGAAACTTGAGAACGG
TAGAATCGATTTGGATTCACCAAGATGGCCACAAGACACATTTTCTGGCC
GTTTTCAACATTTTTGGTCAATCACTGATTGGAGAAATGGTTTACATTCT
GAACAAACTTTAGATGATTCCAAAAAACTTCTTGAGTTATACAGCTCACT
CTCCATTGGTTCATTAGAAAAAGAATTACAGGAGAACATTATGACGAGAA
GTGATGCCTCTAATATCCAACGAGTCTATTTCAATAAAGGCTTGTAATTT
GACTTTGATGGTACCTGTAGCTTGCTCCATCTTCCCTCAAAGGAGCGCAT
CAAACCATTACATGGACCCATCCAGATCTTATTATGTGGTATCAGTACTA
GCACCAATCATCATGGAGAAACTTGAAACATACAACTGGATGAAAGCAGC
ACCACCATTGATGGCCCGCTACGTTCCTTTTGCGGCTGTGGCGGCCGCCA
ATTGTATAAACATACCTTTGATGAGACAGAGTGAGATTCTGAACGGAATT
AGAGTGTACAGTGAAAACGGCGAAGAGTTAGGATCGTCACAAAGGGCTGC
TTACACTAGCATTGTACAAGTCACGGCTTCTAGAATCACAATGGCTGCAC
CAGGAATGTACAAATAATGACGGCATATGTATCAGCAACAAGTGGAGCCA
TGGCTGTTGCTTTAGGTTTGAATTCACTGGTTAAGAACTGTACCACAAGT
AGTTTTATGGCAATGGATCAATCAATCGTTCAATGCTCTTGTCAATTTCA
CCAACAGAAATGCAAAATCTGATATCACCAATAAATCAGGTCTAGAACCA
CCAGGTACGACTGAGGAACAGATCTGGCAAGCCAAAAGGTTATATGAGTC
AGCATTCCATCCTGATACTGGTGAAAAGATGAATGTGATTGGTCGAATGT
CGTTCCAGGTCCCTGGAGGAATGTTGATCACTGGTGGTATGCTCCAATAT
TACAAATGAAACTTGAGAACGGTAGAATCGATTTGGATTCACCAAGATGG
CCACAAGACACATTTTCTGGCCGTTTTCAACATTTTTGGTCAATCACTGA
TTGGAGAAATGGTTTACATTCTGAACAAACTTTAGATGATTCCAAAAAAC
TTCTTGAGTTATACAGCTCACTCTCCATTGGTTCATTAGAAAAAGAATTA
CAGGAGAACATTATGACGAGAAGTGATGCCTCTAATATCCAACGAGTCTA
TTTCAATAAAGGCTTGTAATTTGACTTTGATGGTACCTGTAGCTTGCTCC
ATCTTCCCTCAAAGGAGCGCATCAAACCATTACATGGACCCATCCAGATC
TTATTATGTGGTATCAGTACTAGCACCAATCATCATGGAGAAACTTGAAA
CATACAACTGGATGAAAGCAGCACCACCATTGATGGCCCGCTACGTTCCT
TTTGCGGCTGTGGCGGCCGCCAATTGTATAAACATACCTTTGATGAGACA
GAGTGAGATTCTGAACGGAATTAGAGTGTACAGTGAAAACGGCGAAGAGT
TAGGATCGTCACAAAGGGCTGCTTACACTAGCATTGTACAAGTCACGGCT
TCTAGAATCACAATGGCTGCACCAGGAATGTACAAATAATGACGGCATAT
GTATCAGCAACAAGTGGAGCCATGGCTGTTGCTTTAGGTTTGAATTCACT
GGTTAAGAACTGTACCACAAGTAGTTTTATGGCAATGGATCAATCAATCG
TTCAATGCTCTTGTCAATTTCACCAACAGAAATGCAAAATCTGATATCAC
CAATAAATCAGGTCTAGAACCACCAGGTACGACTGAGGAACAGATCTGGC
AAGCCAAAAGGTTATATGAGTCAGCATTCCATCCTGATACTGGTGAAAAG
ATGAATGTGATTGGTCGAATGTCGTTCCAGGTCCCTGGAGGAATGTTGAT
CACTGGTGGTATGCTCCAATATTACAAATGAAACTTGAGAACGGTAGAAT
CGATTTGGATTCACCAAGATGGCCACAAGACACATTTTCTGGCCGTTTTC
AACATTTTTGGTCAATCACTGATTGGAGAAATGGTTTACATTCTGAACAA
ACTTTAGATGATTCCAAAAAACTTCTTGAGTTATACAGCTCACTCTCCAT
TGGTTCATTAGAAAAAGAATTACAGGAGAACATTATGACGAGAAGTGATG
CCTCTAATATCCAACGAGTCTATTTCAATAAAGGCTTGTAATTTGACTTT
GATGGTACCTGTAGCTTGCTCCATCTTCCCTCAAAGGAGCGCATCAAACC
ATTACATGGACCCATCCAGATCTTATTATGTGGTATCAGTACTAGCACCA
ATCATCATGGAGAAACTTGAAACATACAACTGGATGAAAGCAGCACCACC
ATTGATGGCCCGCTACGTTCCTTTTGCGGCTGTGGCGGCCGCCAATTGTA
TAAACATACCTTTGATGAGACAGAGTGAGATTCTGAACGGAATTAGAGTG
TACAGTGAAAACGGCGAAGAGTTAGGATCGTCACAAAGGGCTGCTTACAC
TAGCATTGTACAAGTCACGGCTTCTAGAATCACAATGGCTGCACCAGGAA
TGTACAAATAATGACGGCATATGTATCAGCAACAAGTGGAGCCATGGCTG
TTGCTTTAGGTTTGAATTCACTGGTTAAGAACTGTACCACAAGTAGTTTT
ATGGCAATGGATCAATCAATCGTTCAATGCTCTTGTCAATTTCACCAACA
GAAATGCAAAATCTGATATCACCAATAAATCAGGTCTAGAACCACCAGGT
ACGACTGAGGAACAGATCTGGCAAGCCAAAAGGTTATATGAGTCAGCATT
CCATCCTGATACTGGTGAAAAGATGAATGTGATTGGTCGAATGTCGTTCC
AGGTCCCTGGAGGAATGTTGATCACTGGTGGTATGCTCCAATATTACAAA
TGAAACTTGAGAACGGTAGAATCGATTTGGATTCACCAAGATGGCCACAA
GACACATTTTCTGGCCGTTTTCAACATTTTTGGTCAATCACTGATTGGAG
AAATGGTTTACATTCTGAACAAACTTTAGATGATTCCAAAAAACTTCTTG
AGTTATACAGCTCACTCTCCATTGGTTCATTAGAAAAAGAATTACAGGAG
AACATTATGACGAGAAGTGATGCCTCTAATATCCAACGAGTCTATTTCAA
TAAAGGCTTGTAATTTGACTTTGATGGTACCTGTAGCTTGCTCCATCTTC
CCTCAAAGGAGCGCATCAAACCATTACATGGACCCATCCAGATCTTATTA
TGTGGTATCAGTACTAGCACCAATCATCATGGAGAAACTTGAAACATACA
ACTGGATGAAAGCAGCACCACCATTGATGGCCCGCTACGTTCCTTTTGCG
GCTGTGGCGGCCGCCAATTGTATAAACATACCTTTGATGAGACAGAGTGA
GATTCTGAACGGAATTAGAGTGTACAGTGAAAACGGCGAAGAGTTAGGAT
CGTCACAAAGGGCTGCTTACACTAGCATTGTACAAGTCACGGCTTCTAGA
ATCACAATGGCTGCACCAGGAATGTACAAATAATGACGGCATATGTATCA
GCAACAAGTGGAGCCATGGCTGTTGCTTTAGGTTTGAATTCACTGGTTAA
GAACTGTACCACAAGTAGTTTTATGGCAATGGATCAATCAATCGTTCAAT
GCTCTTGTCAATTTCACCAACAGAAATGCAAAATCTGATATCACCAATAA
ATCAGGTCTAGAACCACCAGGTACGACTGAGGAACAGATCTGGCAAGCCA
AAAGGTTATATGAGTCAGCATTCCATCCTGATACTGGTGAAAAGATGAAT
GTGATTGGTCGAATGTCGTTCCAGGTCCCTGGAGGAATGTTGATCACTGG
TGGTATGCTCCAATATTACAAATGAAACTTGAGAACGGTAGAATCGATTT
GGATTCACCAAGATGGCCACAAGACACATTTTCTGGCCGTTTTCAACATT
TTTGGTCAATCACTGATTGGAGAAATGGTTTACATTCTGAACAAACTTTA
GATGATTCCAAAAAACTTCTTGAGTTATACAGCTCACTCTCCATTGGTTC
ATTAGAAAAAGAATTACAGGAGAACATTATGACGAGAAGTGATGCCTCTA
ATATCCAACGAGTCTATTTCAATAAAGGCTTGTAATTTGACTTTGATGGT
ACCTGTAGCTTGCTCCATCTTCCCTCAAAGGAGCGCATCAAACCATTACA
TGGACCCATCCAGATCTTATTATGTGGTATCAGTACTAGCACCAATCATC
ATGGAGAAACTTGAAACATACAACTGGATGAAAGCAGCACCACCATTGAT
GGCCCGCTACGTTCCTTTTGCGGCTGTGGCGGCCGCCAATTGTATAAACA
TACCTTTGATGAGACAGAGTGAGATTCTGAACGGAATTAGAGTGTACAGT
GAAAACGGCGAAGAGTTAGGATCGTCACAAAGGGCTGCTTACACTAGCAT
TGTACAAGTCACGGCTTCTAGAATCACAATGGCTGCACCAGGAATGTACA
AATAATGACGGCATATGTATCAGCAACAAGTGGAGCCATGGCTGTTGCTT
TAGGTTTGAATTCACTGGTTAAGAACTGTACCACAAGTAGTTTTATGGCA
ATGGATCAATCAATCGTTCAATGCTCTTGTCAATTTCACCAACAGAAATG
CAAAATCTGATATCACCAATAAATCAGGTCTAGAACCACCAGGTACGACT
GAGGAACAGATCTGGCAAGCCAAAAGGTTATATGAGTCAGCATTCCATCC
TGATACTGGTGAAAAGATGAATGTGATTGGTCGAATGTCGTTCCAGGTCC
CTGGAGGAATGTTGATCACTGGTGGTATGCTCCAATATTACAAATGAAAC
TTGAGAACGGTAGAATCGATTTGGATTCACCAAGATGGCCACAAGACACA
TTTTCTGGCCGTTTTCAACATTTTTGGTCAATCACTGATTGGAGAAATGG
TTTACATTCTGAACAAACTTTAGATGATTCCAAAAAACTTCTTGAGTTAT
ACAGCTCACTCTCCATTGGTTCATTAGAAAAAGAATTACAGGAGAACATT
ATGACGAGAAGTGATGCCTCTAATATCCAACGAGTCTATTTCAATAAAGG
CTTGTAATTTGACTTTGATGGTACCTGTAGCTTGCTCCATCTTCCCTCAA
AGGAGCGCATCAAACCATTACATGGACCCATCCAGATCTTATTATGTGGT
ATCAGTACTAGCACCAATCATCATGGAGAAACTTGAAACATACAACTGGA
TGAAAGCAGCACCACCATTGATGGCCCGCTACGTTCCTTTTGCGGCTGTG
GCGGCCGCCAATTGTATAAACATACCTTTGATGAGACAGAGTGAGATTCT
GAACGGAATTAGAGTGTACAGTGAAAACGGCGAAGAGTTAGGATCGTCAC
AAAGGGCTGCTTACACTAGCATTGTACAAGTCACGGCTTCTAGAATCACA
ATGGCTGCACCAGGAATGTACAAATAATGACGGCATATGTATCAGCAACA
AGTGGAGCCATGGCTGTTGCTTTAGGTTTGAATTCACTGGTTAAGAACTG
TACCACAAGTAGTTTTATGGCAATGGATCAATCAATCGTTCAATGCTCTT
GTCAATTTCACCAACAGAAATGCAAAATCTGATATCACCAATAAATCAGG
TCTAGAACCACCAGGTACGACTGAGGAACAGATCTGGCAAGCCAAAAGGT
TATATGAGTCAGCATTCCATCCTGATACTGGTGAAAAGATGAATGTGATT
GGTCGAATGTCGTTCCAGGTCCCTGGAGGAATGTTGATCACTGGTGGTAT
GCTCCAATATTACAAATGAAACTTGAGAACGGTAGAATCGATTTGGATTC
ACCAAGATGGCCACAAGACACATTTTCTGGCCGTTTTCAACATTTTTGGT
CAATCACTGATTGGAGAAATGGTTTACATTCTGAACAAACTTTAGATGAT
TCCAAAAAACTTCTTGAGTTATACAGCTCACTCTCCATTGGTTCATTAGA
AAAAGAATTACAGGAGAACATTATGACGAGAAGTGATGCCTCTAATATCC
AACGAGTCTATTTCAATAAAGGCTTGTAATTTGACTTTGATGGTACCTGT
AGCTTGCTCCATCTTCCCTCAAAGGAGCGCATCAAACCATTACATGGACC
CATCCAGATCTTATTATGTGGTATCAGTACTAGCACCAATCATCATGGAG
AAACTTGAAACATACAACTGGATGAAAGCAGCACCACCATTGATGGCCCG
CTACGTTCCTTTTGCGGCTGTGGCGGCCGCCAATTGTATAAACATACCTT
TGATGAGACAGAGTGAGATTCTGAACGGAATTAGAGTGTACAGTGAAAAC
GGCGAAGAGTTAGGATCGTCACAAAGGGCTGCTTACACTAGCATTGTACA
AGTCACGGCTTCTAGAATCACAATGGCTGCACCAGGAATGTACAAATAAT
GACGGCATATGTATCAGCAACAAGTGGAGCCATGGCTGTTGCTTTAGGTT
TGAATTCACTGGTTAAGAACTGTACCACAAGTAGTTTTATGGCAATGGAT
CAATCAATCGTTCAATGCTCTTGTCAATTTCACCAACAGAAATGCAAAAT
CTGATATCACCAATAAATCAGGTCTAGAACCACCAGGTACGACTGAGGAA
CAGATCTGGCAAGCCAAAAGGTTATATGAGTCAGCATTCCATCCTGATAC
TGGTGAAAAGATGAATGTGATTGGTCGAATGTCGTTCCAGGTCCCTGGAG
GAATGTTGATCACTGGTGGTATGCTCCAATATTACAAATGAAACTTGAGA
ACGGTAGAATCGATTTGGATTCACCAAGATGGCCACAAGACACATTTTCT
GGCCGTTTTCAACATTTTTGGTCAATCACTGATTGGAGAAATGGTTTACA
TTCTGAACAAACTTTAGATGATTCCAAAAAACTTCTTGAGTTATACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004924XLOC_004924Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008788-exon-sc0000087-1575043694:497620..497889TCONS_00008788-exon-sc0000087-1575043694:497620..497889Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1575043694:497169..497339TCONS_00008788-exon-sc0000087-1575043694:497169..497339Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1575043694:496729..496827TCONS_00008788-exon-sc0000087-1575043694:496729..496827Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1575043694:496311..496386TCONS_00008788-exon-sc0000087-1575043694:496311..496386Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1575043694:495577..495790TCONS_00008788-exon-sc0000087-1575043694:495577..495790Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1575043694:494844..494893TCONS_00008788-exon-sc0000087-1575043694:494844..494893Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1575043694:493978..494027TCONS_00008788-exon-sc0000087-1575043694:493978..494027Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1575043694:493528..493575TCONS_00008788-exon-sc0000087-1575043694:493528..493575Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1575043694:492832..493240TCONS_00008788-exon-sc0000087-1575043694:492832..493240Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1510915933:497620..497889TCONS_00008788-exon-sc0000087-1510915933:497620..497889Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1510915933:497169..497339TCONS_00008788-exon-sc0000087-1510915933:497169..497339Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1510915933:496729..496827TCONS_00008788-exon-sc0000087-1510915933:496729..496827Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1510915933:496311..496386TCONS_00008788-exon-sc0000087-1510915933:496311..496386Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1510915933:495577..495790TCONS_00008788-exon-sc0000087-1510915933:495577..495790Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1510915933:494844..494893TCONS_00008788-exon-sc0000087-1510915933:494844..494893Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1510915933:493978..494027TCONS_00008788-exon-sc0000087-1510915933:493978..494027Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1510915933:493528..493575TCONS_00008788-exon-sc0000087-1510915933:493528..493575Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1510915933:492832..493240TCONS_00008788-exon-sc0000087-1510915933:492832..493240Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1491911889:497620..497889TCONS_00008788-exon-sc0000087-1491911889:497620..497889Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1491911889:497169..497339TCONS_00008788-exon-sc0000087-1491911889:497169..497339Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1491911889:496729..496827TCONS_00008788-exon-sc0000087-1491911889:496729..496827Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1491911889:496311..496386TCONS_00008788-exon-sc0000087-1491911889:496311..496386Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1491911889:495577..495790TCONS_00008788-exon-sc0000087-1491911889:495577..495790Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1491911889:494844..494893TCONS_00008788-exon-sc0000087-1491911889:494844..494893Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1491911889:493978..494027TCONS_00008788-exon-sc0000087-1491911889:493978..494027Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1491911889:493528..493575TCONS_00008788-exon-sc0000087-1491911889:493528..493575Clytia hemisphaericaexon
TCONS_00008788-exon-sc0000087-1491911889:492832..493240TCONS_00008788-exon-sc0000087-1491911889:492832..493240Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008788-proteinTCONS_00008788-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:492832..497889 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
65.3537	60.8521	21.0738	13.8116	73.1871	55.5547	48.7098	54.1564	56.6458	46.8395	39.4526	37.6884	41.7021	39.4182	75.9302	83.0814	69.2956	60.899	24.4594	22.4459	41.2322	40.0102	70.8586	65.237	39.74	42.8259	60.21	57.2061	63.813	57.08
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004686Mtc
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0015075ion transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0015075 ion transmembrane transporter activity
Blast
[Close]
BLAST of TCONS_00008788 vs. Swiss-Prot (Human)
Match: SFXN2 (Sideroflexin-2 OS=Homo sapiens GN=SFXN2 PE=1 SV=2)

HSP 1 Score: 355.91 bits (912), Expect = 2.533e-119
Identity = 180/323 (55.73%), Postives = 238/323 (73.68%), Query Frame = 2 
Query:  110 MKLENGRIDLDSPRWPQDTFSGRFQHFWSITDWRNGLHSEQTLDDSKKLLELYRSGLEPPGTTEEQIWQAKRLYESAFHPDTGEKMNVIGRMSFQVPGGMLITGGMLQYYKTVPQVVLWQWINQSFNALVNFTNRNAKSDITNKQIMTAYVSATSGAMAVALGLNSLVKAAPPLMARYVPFXXXXXXNCINIPLMRQSEILNGIRVYSENGEELGSSQRAAYTSIVQVTASRITMAAPGMLLAPIIMEKLETYNWMKRIKPLHGPIQILLCGISLTLMVPVACSIFPQRSSLSIGSLEKELQENIMTRSDASNIQRVYFNKGL 1078
            M+ +    ++D+PRW Q TF GR +HF +ITD R    SE+ LD +K ++E  R G+ PPGT  EQ+  AK+LY+SAFHPDTGEKMNVIGRMSFQ+PGGM+ITG MLQ+Y+T+P V+ WQW+NQSFNALVN+TNRNA S  + +Q+  +Y +AT+ A+A A+G+N L K APPL+ R+VPFAAVAAANC+NIP+MRQ E++ GI V   N  E+G S+RAA   I QV  SRITM+APGM+L P+IME+LE  ++M+++K LH P+Q++L G  L  MVPVAC +FPQ+  L +  LE +LQ+ I  +        VYFNKGL
Sbjct:    1 MEADLSGFNIDAPRWDQRTFLGRVKHFLNITDPRTVFVSERELDWAKVMVEKSRMGVVPPGTQVEQLLYAKKLYDSAFHPDTGEKMNVIGRMSFQLPGGMIITGFMLQFYRTMPAVIFWQWVNQSFNALVNYTNRNAASPTSVRQMALSYFTATTTAVATAVGMNMLTKKAPPLVGRWVPFAAVAAANCVNIPMMRQQELIKGICVKDRNENEIGHSRRAAAIGITQVVISRITMSAPGMILLPVIMERLEKLHFMQKVKVLHAPLQVMLSGCFLIFMVPVACGLFPQKCELPVSYLEPKLQDTIKAKYGELE-PYVYFNKGL 322
The following BLAST results are available for this feature:
BLAST of TCONS_00008788 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SFXN22.533e-11955.73Sideroflexin-2 OS=Homo sapiens GN=SFXN2 PE=1 SV=2[more]
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