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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008782 ID=TCONS_00008782|Name=TCONS_00008782|organism=Clytia hemisphaerica|type=transcript|length=2059bp
AAAAGTTTTACAGATGGCACGAAGTTTGTCAAAAATATTACACATCCATA
GGTCAAAGAATACAGTTATTATAAAGGGCGAAAAAATCAAGAACTTGGTT
TGTTTTTGTGTCACAAAAAGATGACTGAGGGAGATTAGAAAAATAGAGAC
ATAAAACAAACCGAGACGAAATGACATTTTTAGAATGAGTACAGTTTCAG
AAAAAATTTCAAGAAGGACAGGCCATTATCCATACCAGCATGTAGCTTTT
CAAAGTTATATCAAGAATTCATTGACTTCAAATCTGTACCGTCCTAAAAA
TCTGACCTACACAGACAAGAGGATTATAGTTGGTTTTGCGACAGAGGGAA
GTTCTTCCTCAGAAGAAGAAGACTTCACAGAAGATTTCAGTTGGGAGAAT
CTACAACACCGCACTGAAAAACATCAAATCGAGGCTGACCCGACATCATT
CACAATGAAAATAATATCAAGTTTAGAAGAGAATCATTCGTTCGTTTTAA
AGCGACGTCTTCTCATCATGGCCTTCATTTTTCGCATGTTTCTTATCGGA
GTTCAATATTCAGTGATTTTACCAACTTGTATGCTGTATATGAAAAAATT
TGGTGTCGGCGAAACTTTCACCGGGACTGTCATTGCAGCTTATCCGTTCG
CTAGCATGATTTCAGCTTTCGTTGTTGGCTACGCATACAACAAGACAAGA
CGAGTCAAAGAGATCATATTGATTATGAATACTTTTCAGATCATCGGTAA
TATCGTTTACGCGCTACCCTACTCGCCGTTTTTACCACTCGCGGGACGTT
TTATTTGTGGACTTGGGGATAGCTTTATTGGTGCTACCATTGGTGAGATT
TGCGAGTTATATCCAAAGACCCACCGTACGGGTATCATATCCTTGATCGA
GTTTGGCCGTATCTTTGGTTTTATGTTAGGTCCATTACTCCATATGGTCA
TACAACGAAAGCGGTATCAGCTTGGTGGTATCGAATTCGATAGTACCACG
TTCCCAGGGCTTGCCATGACTTGTTTTTGGATCATCATGCAGTTGGTGAC
GCTATTCTGGGTCCGCAATCTTGCAAAATCCATTCGCGAGAATCCTGAGT
TGATGGATGAAAGAGATAAAGAGTTTTCCTTCACCGATAAAGCaacagaa
gaagaaaaaaagcttCTGTCTGAAGAAAATGTAAAGTCACGTGATCAAAA
AATGTCTAATCACCATGGCAacaaggaggaagaaaaaccaACTTATCTTA
ATAATAACAACAAAGAGAGACGCACGCAaccaaatatttttgaagagATT
TCACGTCTCTGTACGGCTAATGTCATCGTCATATTCTACCTGGATACGGT
GCTATGGCTTGCTCAATCCGTTTTCGAATTCTTGTTACCACTTATTGCGG
AATTTGAATACGGTTGGACACCTTTCCAAACGGGCGTGGTTTACATGGCA
GGTGGCATCGAACTCATCATGGTTTTCGGCTACTTGTATTACATCAGTAA
ACGTAATAATTTTCGCGATACTTATCTCATTTTATGGTCGTTGGTAATGA
CTCTATTATCCTTAATGCTGCTCATTTTTGAGCGTTTAATGCCGAAAACA
AGTCAAAAAATTGGTATGTTTGTCACAATTTGCGGGTTGATGTTCGTCGC
TGTCCCGTTAAACCTGACCGGTGTAAAATCTCTACTCTCCAAAATCACAC
GACCTGAGTTTCAAGGTATCACTCAAGGTCTTTACGGTTCGGTTTGTAGT
TTTTCACTCATCATAGGGCCTATGTTGGGTAGTCTCATTTATAAGCATCG
AGCGGAATATGGCGGAGTGACAGCCATGTTGTCTATCACCTGCATCTTAG
CATTGTGTGTTTGTATGGAGAAAATCCATGATCGGGAAGATCAAATCACA
ATAGAAACTGAAAACCAAGAATTCCTTAAAGATCTTGCTACCTTTAGAAg
ttgaaatcataaaaaatacgaaaatgacACAACATCAGGCAATGCAGATC
TGTAGTAATACTTGAAGTCAAAACAACGAACATTTGACGTTCATAACGGT
CGTCGAAAT Run BLAST on NCBI transcript from alignment at sc0000087:376084..381067- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008782 ID=TCONS_00008782|Name=TCONS_00008782|organism=Clytia hemisphaerica|type=transcript|length=4984bp|location=Sequence derived from alignment at sc0000087:376084..381067- (Clytia hemisphaerica)
AAAAGTTTTACAGATGGCACGAAGTTTGTCAAAAATATTACACATCCATA
GGTCAAAGAATACAGTTATTATAAAGGGCGAAAAAATCAAGAACTTGGTT
TGTTTTTGTGTCACAAAAAGATGACTGAGGGAGATTAGAAAAATAGAGAC
ATAAAACAAACCGAGACGAAATGACATTTTTAGAATGAGTACAGTTTCAG
AAAAAATTTCAAGAAGGACAGGCCATTATCCATACCAGCATGTAGCTTTT
CAAAGTTATATCAAGAATTCATTGACTTCAAATCTGTACCGTCCTAAAAA
TCTGACCTACACAGACAAGAGGATTATAGTTGGTTTTGCGACAGAGGGAA
GTTCTTCCTCAGAAGAAGAAGACTTCACAGAAGATTTCAGTTGGGAGAAT
CTACAACACCGCACTGAAAAACATCAAATCGAGGCTGACCCGACATCATT
CACAATGAAAATAATATCAAGTTTAGAAGAGAATCATTCGTTCGTTTTAA
AGCGACGTCTTCTCATCATGGCCTTCATTTTTCGCATGTTTCTTATCGGA
GTTCAATATTCAGTGATTTTACCAACTTGTATGCTGTATATGAAAAAATT
TGGTGTCGGCGAAACTTTCACCGGGACTGTCATTGCAGCTTATCCGTTCG
CTAGCATGATTTCAGCTTTCGTTGTTGGCTACGCATACAACAAGACAAGA
CGAGTCAAAGAGATCATATTGATTATGAATACTTTTCAGATCATCGGTAA
TATCGTTTACGCGCTACCCTACTCGCCGTTTTTACCACTCGCGGGACGTT
TTATTTGTGGACTTGGGGATAGCTTTATTGGTGCTACCATTGGTAAGATT
CAATTTAGTATCCATACCTTAGGTCTCTTTNTAGGGAGCAGATTTTTATG
ACACTGTAATTATCTATTCATGGTATTAAAAGATAATTATAATGGCATAA
AAATCTGCTCTCCTACAAAAATTTTGCGCCCCTCTTGGCTACGCTACTGA
ACCAGCTCTTGTTTTTTTGAACGATAAACATACTTATTCATGAGGGTTTT
ACGTGTACATTGATAACATTAAAAAACAGCCTATTTTTAAATAGCTCAGT
CAATCATTGGGACCCTAAAAGCTAATGAATTTTCGATGAAATTTTATAAA
ATGTCAAGCTTACAGTAGACAATAGTTTTTCGAAAAAATTCAAAGTGAGA
ATTTCAAAAAATTTGTAAAAACAAATTTTCTTTTTTTAGTGAATAGGAAA
TAACAGTGAACTGTTCTCGAAAAAAAAAAAAATACATAAAAATGGAATAT
TTAGAAGAAAAAGACAAAACTTTTATAGACTTAAAATTAAACAAAAGTTT
TACAGATGGCACGAAGTTTGTCAAAAATATTACACATCCATAGGTCAAAG
AATACAGTTATTATAAAGGGCGAAAAAATCAAGAACTTGGTTTGTTTTTG
TGTCACAAAAAGATGACTGAGGGAGATTAGAAAAGTAGAGACATAAAACA
AACCGAGACGAAATGACTTTTGTAGAATGGGTACAGTTTCTGAAACAATT
TCAAGAAAGACAGGTCATTATCCATACCAGCATGTAGCTTTTCAAAGTTA
TATCAAGAATTCATTGACTTCAAATCTGTACCGTCCTAAAAATCTGACCT
ACACAAACAAGAGGATTATAGTCGGTTTTGCGACAGAGGGAAGTTCTTCC
TCAGAAGAAGAAGAAGAAGACTTCACAGAAGATTTCAGTTGGGAGAATCT
ACAACACCGCACTGAAAAACACCTAATCGAGGCTGACCCAACATCATTCA
CAATGAAAATAATATCAAGTTTAGAAGAGAATCATTCGTTCGTTTTAAAG
CGACGTCTTCTTATTATGGCCTTCATTTTTCGCATGTTTCTTATCGGAGT
TCAATATTCAGTGATTTTACCAACTTGTATGCTGTATATGAAAAAATTCN
CATTCGAGCCTTATCAATCGTTACTGTAGGGCAAGTTGAACGTGTCAAGT
TCGTGATATCATCGGGTAGTTTTTGATAGGCAATACCATTTAGGTAAAAT
ATATACCAACAGTAGCGTAGCCAAGAGGAGCGCAGAATTTGTGTAGGGAG
CAGATTTTTATGACACTGTAATTATCTATTCATGGTATTAAAAGATAATT
ATAATGGCATAAAAATCTGCTCTCCTACAAAAATTTTGCGCCCCTCTTGG
CTACGCTACTGAACCAGCTCTTGTTTTTTTGAACGATAAACATACTTATT
CATGAGGGTTTTACGTGTACATTGATAACATTAAAAAACAGCCTATTTTT
AAATAGCTCAGTCAATCATTGGGACCCTAAAAGCTAATGAATTTTCGATG
AAATTTTATAAAATGTCAAGCTTACAGTAGACAATAGTTTTTCGAAAAAA
TTCAAAGTGAGAATTTCAAAAAATTTGTAAAAACAAATTTTCTTTTTTTA
GTTAATAGGAAATAACAGTGAACTGTTCTCGAAAAAAAAAATACATAAAA
ATGGAATATTTAGAAGAAAAAGACAAAACTTTTATAGACTTAAAATTAAA
CAAAAGTTTTACAGATGGCACGAAGTTTGTCAAAAATATTACACATCCAT
AGGTCAAAGAATACAGTTATTATAAAGGGCGAAAAAATCAAGAACTTGGT
TTGTTTTTGTGTCACAAAAAGATGACTGAGGGAGATTAGAAAAATAGAGA
CATAAAACAAACCGAGACGAAATGACATTTTTAGAATGAGTACAGTTTCA
GAAAAAATTTCAAGAAGGACAGGCCATTATCCATACCAGCATGTAGCTTT
TCAAAGTTATATCAAGAATTCATTGACTTCAAATCTGTACCGTCCTAAAA
ATCTGACCTACACAGACAAGAGGATTATAGTTGGTTTTGCGACAGAGGGA
AGTTCTTCCTCAGAAGAAGAAGACTTCACAGAAGATTTCAGTTGGGAGAA
TCTACAACACCGCACTGAAAAACATCAAATCGAGGCTGACCCGACATCAT
TCACAATGAAAATAATATCAAGTTTAGAAGAGAATCATTCGTTCGTTTTA
AAGCGACGTCTTCTCATCATGGCCTTCATTTTTCGCATGTTTCTTATCGG
AGTTCAATATTCAGTGATTTTACCAACTTGTATGCTGTATATGAAAAAAT
TTGGTGTCGGCGAAACTTTCACCGGGACTGTCATTGCAGCTTATCCGTTC
GCTAGCATGATTTCAGCTTTCGTTGTTGGCTACGCATACAACAAGACAAG
ACGAGTCAAAGAGATCATATTGATTATGAATACTTTTCAGATCATCGGTA
ATATCGTTTACGCGCTACCCTACTCGCCGTTTTTACCACTCGCGGGACGT
TTTATTTGTGGACTTGGGGATAGCTTTATTGGTGCTACCATTGGTAAGAT
TCAATTTAGTATCCATACCTTAGGTCTCTTTATATTTTCTTTAAAAATTC
AATTGGATTCTTAGAAATAAACAGAAATACAGAATGTATGATTAAAAGAA
AAATATATTTTTTTATTTTTATTCTATCGGGTTATTCCAGTAAAAACATT
ACCCCTCCCCATGTTGATGAAGTATAAGTTTTCACCGTCGAGGTTGATGC
CCTCAAATGATTTAACTTTTCTTAGGGTCCCTTAAAACATAGGCAATTCC
ATGGAGGTCTCTCAAAATCTGAGCGAAAATGCAAGTCAAAAAAGTTTAAA
AACACAGAAATTAAGTTTTCCCAGTCGTCTACATTAATTAATTTGAATTT
CTCTTTCCTCTTATAAGGTGAGATTTGCGAGTTATATCCAAAGACCCACC
GTACGGGTATCATATCCTTGATCGAGTTTGGCCGTATCTTTGGTTTTATG
TTAGGTCCATTACTCCATATGGTCATACAACGAAAGCGGTATCAGCTTGG
TGGTATCGAATTCGATAGTACCACGTTCCCAGGGCTTGCCATGACTTGTT
TTTGGATCATCATGCAGTTGGTGACGCTATTCTGGGTCCGCAATCTTGCA
AAATCCATTCGCGAGAATCCTGAGTTGATGGATGAAAGAGATAAAGAGTT
TTCCTTCACCGATAAAGCAACAGAAGAAGAAAAAAAGCTTCTGTCTGAAG
AAAATGTAAAGTCACGTGATCAAAAAATGTCTAATCACCATGGCAACAAG
GAGGAAGAAAAACCAACTTATCTTAATAATAACAACAAAGAGAGACGCAC
GCAACCAAATATTTTTGAAGAGATTTCACGTCTCTGTACGGCTAATGTCA
TCGTCATATTCTACCTGGATACGGTGCTATGGCTTGCTCAATCCGTTTTC
GAATTCTTGTTACCACTTATTGCGGAATTTGAATACGGTTGGACACCTTT
CCAAACGGGCGTGGTTTACATGGCAGGTGGCATCGAACTCATCATGGTTT
TCGGCTACTTGTATTACATCAGTAAACGTAATAATTTTCGCGATACTTAT
CTCATTTTATGGTCGTTGGTAATGACTCTATTATCCTTAATGCTGCTCAT
TTTTGAGCGTTTAATGCCGAAAACAAGTCAAAAAATTGGTATGTTTGTCA
CAATTTGCGGGTTGATGTTCGTCGCTGTCCCGTTAAACCTGACCGGTGTA
AAATCTCTACTCTCCAAAATCACACGACCTGAGTTTCAAGGTATCACTCA
AGGTCTTTACGGTTCGGTTTGTAGTTTTTCACTCATCATAGGGCCTATGT
TGGGTAGTCTCATTTATAAGCATCGAGCGGAATATGGCGGAGTGACAGCC
ATGTTGTCTATCACCTGCATCTTAGCATTGTGTGTTTGTATGGAGAAAAT
CCATGATCGGGAAGATCAAATCACAATAGAAACTGAAAACCAAGAATTCC
TTAAAGATCTTGCTACCTTTAGAAGTTGAAATCATAAAAAATACGAAAAT
GACACAACATCAGGCAATGCAGATCTGTAGTAATACTTGAAGTCAAAACA
ACGAACATTTGACGTTCATAACGGTCGTCGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008782-exon-sc0000087-1575043694:380226..381067 | TCONS_00008782-exon-sc0000087-1575043694:380226..381067 | Clytia hemisphaerica | exon |
| TCONS_00008782-exon-sc0000087-1575043694:376084..377300 | TCONS_00008782-exon-sc0000087-1575043694:376084..377300 | Clytia hemisphaerica | exon |
| TCONS_00008782-exon-sc0000087-1510915933:380226..381067 | TCONS_00008782-exon-sc0000087-1510915933:380226..381067 | Clytia hemisphaerica | exon |
| TCONS_00008782-exon-sc0000087-1510915933:376084..377300 | TCONS_00008782-exon-sc0000087-1510915933:376084..377300 | Clytia hemisphaerica | exon |
| TCONS_00008782-exon-sc0000087-1491911889:380226..381067 | TCONS_00008782-exon-sc0000087-1491911889:380226..381067 | Clytia hemisphaerica | exon |
| TCONS_00008782-exon-sc0000087-1491911889:376084..377300 | TCONS_00008782-exon-sc0000087-1491911889:376084..377300 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:376084..381067 - |
Blast
The following BLAST results are available for this feature:
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