TCONS_00008780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008780
Unique NameTCONS_00008780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2040

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008780 ID=TCONS_00008780|Name=TCONS_00008780|organism=Clytia hemisphaerica|type=transcript|length=2040bp
CGAagtttgtcaaaaatattacacaTCCATAGGTCAAAGAATACAGTTAT
TATAAAGGGCGAAAAAATCAAGAACTTGGTTTGTTTTTGTGTCACAAAAA
GATGACTGAGGGAGATTAGAAAAATAGAGACATAAAACAAACCGAGACGA
AATGACATTTTTAGAATGAGTACAGtttcagaaaaaatttcaagaaggAC
AGGCCATTATCCATACCAGCATGTAGCTTTTCAAAGTTATATCAAGAATT
CATTGACTTCAAATCTGTACCGTCCTAAAAATCTGACCTACACAGACAAG
AGGATTATAGTTGGTTTTGCGACAGAGGGAAGTTCTTCCTCAGAAGAAGA
AGACTTCACAGAAGATTTCAGTTGGGAGAATCTACAACACCGCACTGAAA
AACATCAAATCGAGGCTGACCCGACATCATTCACAATGAAAATAATATCA
AGTTTAGAAGAGAATCATTCGTTCGTTTTAAAGCGACGTCTTCTCATCAT
GGCCTTCATTTTTCGCATGTTTCTTATCGGAGTTCAATATTCAGTGATTT
TACCAACTTGTATGCTGTATATGAAAAAATTTGGTGTCGGCGAAACTTTC
ACCGGGACTGTCATTGCAGCTTATCCGTTCGCTAGCATGATTTCAGCTTT
CGTTGTTGGCTACGCATACAACAAGACAAGACGAGTCAAAGAGATCATAT
TGATTATGAATACTTTTCAGATCATCGGTAATATCGTTTACGCGCTACCC
TACTCGCCGTTTTTACCACTCGCGGGACGTTTTATTTGTGGACTTGGGGA
TAGCTTTATTGGTGCTACCATTGGTGAGATTTGCGAGTTATATCCAAAGA
CCCACCGTACGGGTATCATATCCTTGATCGAGTTTGGCCGTATCTTTGGT
TTTATGTTAGGTCCATTACTCCATATGGTCATACAACGAAAGCGGTATCA
GCTTGGTGGTATCGAATTCGATAGTACCACGTTCCCAGGGCTTGCCATGA
CTTGTTTTTGGATCATCATGCAGTTGGTGACGCTATTCTGGGTCCGCAAT
CTTGCAAAATCCATTCGCGAGAATCCTGAGTTGATGGATGAAAGAGATAA
AGAGTTTTCCTTCACCGATAAAGCaacagaagaagaaaaaaagcttCTGT
CTGAAGAAAATGTAAAGTCACGTGATCAAAAAATGTCTAATCACCATGGC
AacaaggaggaagaaaaaccaACTTATCTTAATAATAACAACAAAGAGAG
ACGCACGCAaccaaatatttttgaagagATTTCACGTCTCTGTACGGCTA
ATGTCATCGTCATATTCTACCTGGATACGGTGCTATGGCTTGCTCAATCC
GTTTTCGAATTCTTGTTACCACTTATTGCGGAATTTGAATACGGTTGGAC
ACCTTTCCAAACGGGCGTGGTTTACATGGCAGGTGGCATCGAACTCATCA
TGGTTTTCGGCTACTTGTATTACATCAGTAAACGTAATAATTTTCGCGAT
ACTTATCTCATTTTATGGTCGTTGGTAATGACTCTATTATCCTTAATGCT
GCTCATTTTTGAGCGTTTAATGCCGAAAACAAGTCAAAAAATTGGTATGT
TTGTCACAATTTGCGGGTTGATGTTCGTCGCTGTCCCGTTAAACCTGACC
GGTGTAAAATCTCTACTCTCCAAAATCACACGACCTGAGTTTCAAGGTAT
CACTCAAGGTCTTTACGGTTCGGTTTGTAGTTTTTCACTCATCATAGGGC
CTATGTTGGGTAGTCTCATTTATAAGCATCGAGCGGAATATGGCGGAGTG
ACAGCCATGTTGTCTATCACCTGCATCTTAGCATTGTGTGTTTGTATGGA
GAAAATCCATGATCGGGAAGATCAAATCACAATAGAAACTGAAAACCAAG
AATTCCTTAAAGATCTTGCTACCTTTAGAAgttgaaatcataaaaaatac
gaaaatgacACAACATCAGGCAATGCAGATCTGTAGTAATACTTGAAGTC
AAAACAACGAACATTTGACGTTCATAACGGTCGTCGAAAT
Run BLAST on NCBI

transcript from alignment at sc0000087:376084..378497-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008780 ID=TCONS_00008780|Name=TCONS_00008780|organism=Clytia hemisphaerica|type=transcript|length=2414bp|location=Sequence derived from alignment at sc0000087:376084..378497- (Clytia hemisphaerica)
CGAAGTTTGTCAAAAATATTACACATCCATAGGTCAAAGAATACAGTTAT
TATAAAGGGCGAAAAAATCAAGAACTTGGTTTGTTTTTGTGTCACAAAAA
GATGACTGAGGGAGATTAGAAAAATAGAGACATAAAACAAACCGAGACGA
AATGACATTTTTAGAATGAGTACAGTTTCAGAAAAAATTTCAAGAAGGAC
AGGCCATTATCCATACCAGCATGTAGCTTTTCAAAGTTATATCAAGAATT
CATTGACTTCAAATCTGTACCGTCCTAAAAATCTGACCTACACAGACAAG
AGGATTATAGTTGGTTTTGCGACAGAGGGAAGTTCTTCCTCAGAAGAAGA
AGACTTCACAGAAGATTTCAGTTGGGAGAATCTACAACACCGCACTGAAA
AACATCAAATCGAGGCTGACCCGACATCATTCACAATGAAAATAATATCA
AGTTTAGAAGAGAATCATTCGTTCGTTTTAAAGCGACGTCTTCTCATCAT
GGCCTTCATTTTTCGCATGTTTCTTATCGGAGTTCAATATTCAGTGATTT
TACCAACTTGTATGCTGTATATGAAAAAATTTGGTGTCGGCGAAACTTTC
ACCGGGACTGTCATTGCAGCTTATCCGTTCGCTAGCATGATTTCAGCTTT
CGTTGTTGGCTACGCATACAACAAGACAAGACGAGTCAAAGAGATCATAT
TGATTATGAATACTTTTCAGATCATCGGTAATATCGTTTACGCGCTACCC
TACTCGCCGTTTTTACCACTCGCGGGACGTTTTATTTGTGGACTTGGGGA
TAGCTTTATTGGTGCTACCATTGGTAAGATTCAATTTAGTATCCATACCT
TAGGTCTCTTTATATTTTCTTTAAAAATTCAATTGGATTCTTAGAAATAA
ACAGAAATACAGAATGTATGATTAAAAGAAAAATATATTTTTTTATTTTT
ATTCTATCGGGTTATTCCAGTAAAAACATTACCCCTCCCCATGTTGATGA
AGTATAAGTTTTCACCGTCGAGGTTGATGCCCTCAAATGATTTAACTTTT
CTTAGGGTCCCTTAAAACATAGGCAATTCCATGGAGGTCTCTCAAAATCT
GAGCGAAAATGCAAGTCAAAAAAGTTTAAAAACACAGAAATTAAGTTTTC
CCAGTCGTCTACATTAATTAATTTGAATTTCTCTTTCCTCTTATAAGGTG
AGATTTGCGAGTTATATCCAAAGACCCACCGTACGGGTATCATATCCTTG
ATCGAGTTTGGCCGTATCTTTGGTTTTATGTTAGGTCCATTACTCCATAT
GGTCATACAACGAAAGCGGTATCAGCTTGGTGGTATCGAATTCGATAGTA
CCACGTTCCCAGGGCTTGCCATGACTTGTTTTTGGATCATCATGCAGTTG
GTGACGCTATTCTGGGTCCGCAATCTTGCAAAATCCATTCGCGAGAATCC
TGAGTTGATGGATGAAAGAGATAAAGAGTTTTCCTTCACCGATAAAGCAA
CAGAAGAAGAAAAAAAGCTTCTGTCTGAAGAAAATGTAAAGTCACGTGAT
CAAAAAATGTCTAATCACCATGGCAACAAGGAGGAAGAAAAACCAACTTA
TCTTAATAATAACAACAAAGAGAGACGCACGCAACCAAATATTTTTGAAG
AGATTTCACGTCTCTGTACGGCTAATGTCATCGTCATATTCTACCTGGAT
ACGGTGCTATGGCTTGCTCAATCCGTTTTCGAATTCTTGTTACCACTTAT
TGCGGAATTTGAATACGGTTGGACACCTTTCCAAACGGGCGTGGTTTACA
TGGCAGGTGGCATCGAACTCATCATGGTTTTCGGCTACTTGTATTACATC
AGTAAACGTAATAATTTTCGCGATACTTATCTCATTTTATGGTCGTTGGT
AATGACTCTATTATCCTTAATGCTGCTCATTTTTGAGCGTTTAATGCCGA
AAACAAGTCAAAAAATTGGTATGTTTGTCACAATTTGCGGGTTGATGTTC
GTCGCTGTCCCGTTAAACCTGACCGGTGTAAAATCTCTACTCTCCAAAAT
CACACGACCTGAGTTTCAAGGTATCACTCAAGGTCTTTACGGTTCGGTTT
GTAGTTTTTCACTCATCATAGGGCCTATGTTGGGTAGTCTCATTTATAAG
CATCGAGCGGAATATGGCGGAGTGACAGCCATGTTGTCTATCACCTGCAT
CTTAGCATTGTGTGTTTGTATGGAGAAAATCCATGATCGGGAAGATCAAA
TCACAATAGAAACTGAAAACCAAGAATTCCTTAAAGATCTTGCTACCTTT
AGAAGTTGAAATCATAAAAAATACGAAAATGACACAACATCAGGCAATGC
AGATCTGTAGTAATACTTGAAGTCAAAACAACGAACATTTGACGTTCATA
ACGGTCGTCGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004921XLOC_004921Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008780-exon-sc0000087-1575043694:377675..378497TCONS_00008780-exon-sc0000087-1575043694:377675..378497Clytia hemisphaericaexon
TCONS_00008780-exon-sc0000087-1575043694:376084..377300TCONS_00008780-exon-sc0000087-1575043694:376084..377300Clytia hemisphaericaexon
TCONS_00008780-exon-sc0000087-1510915933:377675..378497TCONS_00008780-exon-sc0000087-1510915933:377675..378497Clytia hemisphaericaexon
TCONS_00008780-exon-sc0000087-1510915933:376084..377300TCONS_00008780-exon-sc0000087-1510915933:376084..377300Clytia hemisphaericaexon
TCONS_00008780-exon-sc0000087-1491911889:377675..378497TCONS_00008780-exon-sc0000087-1491911889:377675..378497Clytia hemisphaericaexon
TCONS_00008780-exon-sc0000087-1491911889:376084..377300TCONS_00008780-exon-sc0000087-1491911889:376084..377300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:376084..378497 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0282179	0	0	0.236099	0	0	0	0	0	0.0202246	0	0	0.0257729	0	0	0	0.659232	0.902959	0.0823889	0	0.427168	1.97376	0.799787	1.21187	0.0120499	0.424693	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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