TCONS_00008778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008778
Unique NameTCONS_00008778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008778 ID=TCONS_00008778|Name=TCONS_00008778|organism=Clytia hemisphaerica|type=transcript|length=688bp
ctatgcAACTTTCTCAAAGTAAAGTTCAATTTTATCGAGTGGTCGAATTG
GGAGGAGGATGTTTCTTGCCTGGAATAAAATATTTCGCTAAACTATAATT
GGACTTTATCCTACTTTGAGCACAAAAGGTGTTTTTTCAATATACTTTTT
TCTAGAGCTCAATAATAttagaaatttaataaaaatcaacGAGAAGCAAC
AATATGGAATAATAAAACATTGTGATCTAGAATGAAAAATTcatcagaat
ttgaaagaaaacatacCAGAAAATGAATTGTTCCTTATATCTGGTACACG
ATACTGTCACTATGGTAATGTGTGGTTTTGGTATCATAGTTACCATAATG
GCCTTCCTTAGCAACCTGGTGATGGCGTTGTATTTTGCTCAAATGAAAAG
ACACCCTGGTGGAATGATTTATTACAAAGCGATAATCGGTATCTCTATGA
CAGCTTCTATCATAGGTAGGTAGAATAGTTTTCTTTTAACTTGGGTTTCA
ACAAAGTTTGTCTTGGTTTCTTTTTAACGAACTTTACTTTTGTGGGATTA
TTACCTTGAAACCGATTGAAGAATGTGGTTTCTTTTCTGCACTTATTCTA
TTCGAACGTTTGGTTTCATAAGTAAAATTCGTATCCGTATCGAAGTAAAG
TTCCATATCTAATCAAGGACCATCGTCGACTATTAACA
Run BLAST on NCBI

transcript from alignment at sc0000087:321498..322185-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008778 ID=TCONS_00008778|Name=TCONS_00008778|organism=Clytia hemisphaerica|type=transcript|length=688bp|location=Sequence derived from alignment at sc0000087:321498..322185- (Clytia hemisphaerica)
CTATGCAACTTTCTCAAAGTAAAGTTCAATTTTATCGAGTGGTCGAATTG
GGAGGAGGATGTTTCTTGCCTGGAATAAAATATTTCGCTAAACTATAATT
GGACTTTATCCTACTTTGAGCACAAAAGGTGTTTTTTCAATATACTTTTT
TCTAGAGCTCAATAATATTAGAAATTTAATAAAAATCAACGAGAAGCAAC
AATATGGAATAATAAAACATTGTGATCTAGAATGAAAAATTCATCAGAAT
TTGAAAGAAAACATACCAGAAAATGAATTGTTCCTTATATCTGGTACACG
ATACTGTCACTATGGTAATGTGTGGTTTTGGTATCATAGTTACCATAATG
GCCTTCCTTAGCAACCTGGTGATGGCGTTGTATTTTGCTCAAATGAAAAG
ACACCCTGGTGGAATGATTTATTACAAAGCGATAATCGGTATCTCTATGA
CAGCTTCTATCATAGGTAGGTAGAATAGTTTTCTTTTAACTTGGGTTTCA
ACAAAGTTTGTCTTGGTTTCTTTTTAACGAACTTTACTTTTGTGGGATTA
TTACCTTGAAACCGATTGAAGAATGTGGTTTCTTTTCTGCACTTATTCTA
TTCGAACGTTTGGTTTCATAAGTAAAATTCGTATCCGTATCGAAGTAAAG
TTCCATATCTAATCAAGGACCATCGTCGACTATTAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004919XLOC_004919Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008778-exon-sc0000087-1575043694:321498..322185TCONS_00008778-exon-sc0000087-1575043694:321498..322185Clytia hemisphaericaexon
TCONS_00008778-exon-sc0000087-1510915933:321498..322185TCONS_00008778-exon-sc0000087-1510915933:321498..322185Clytia hemisphaericaexon
TCONS_00008778-exon-sc0000087-1491911889:321498..322185TCONS_00008778-exon-sc0000087-1491911889:321498..322185Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:321498..322185 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000256774	0.144437	0.380383	0.411935	0	0.000283721	0	0	0	0	0	0.183999	0.000240518	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0822078	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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