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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008777 ID=TCONS_00008777|Name=TCONS_00008777|organism=Clytia hemisphaerica|type=transcript|length=1885bp
ttcatttttcttttaccaAAGTTGGAAGTAACCTTTAACAGTTGAATATA
GGGTTTCAGCCCCTAGGAAGGTGAAATTACTTTTATTTCTGAATGTTGAA
CAAACTATATTTACTTTACAATCCTCAGTTGGTAAGCTTCTTAAATCCAC
AGGGGATTGGTTTCACATATACTTAGACAAATGAATTCACAGCGAAATTC
TTTGAAGGATTTCATATGTCAAACTGCCAGGCAACTGTAATGAaacgttt
ttaaaaataattttctatgcAACTTTCTCAAAGTAAAGTTCAATTTTATC
GAGTGGTCGAATTGGGAGGAGGATGTTTCTTGCCTGGAATAAAATATTTC
GCTAAACTATAATTGGACTTTATCCTACTTTGAGCACAAAAGGTGTTTTT
TCAATATACTTTTTTCTAGAGCTCAATAATAttagaaatttaataaaaat
caacGAGAAGCAACAATATGGAATAATAAAACATTGTGATCTAGAATGAA
AAATTcatcagaatttgaaagaaaacatacCAGAAAATGAATTGTTCCTT
ATATCTGGTACACGATACTGTCACTATGGTAATGTGTGGTTTTGGTATCA
TAGTTACCATAATGGCCTTCCTTAGCAACCTGGTGATGGCGTTGTATTTT
GCTCAAATGAAAAGACACCCTGGTGGAATGATTTATTACAAAGCGATAAT
CGGTATCTCTATGACAGCTTCTATCATAGGTCAACCGTTGGAGACGGCAA
ACACTCTCTTCAAGACATCCAGACTGTATCTCAACCTATCCAGTAACTTT
TGtttgttcttcttcttctgcGCAACCTATCATTGTATCGCTGGGTTGAC
GTTCGAGCGTTATTTCGCGATCAAGCTCGAAGGTCACAAGaagaaaatgg
agaaaaatgTACTGACCATTGTCCTCGTATTCTTAGTAATAGCAATGTGT
ATACCGAAATTTTATAACTTGTATCATATCATATTGGCCAGGGATCATTG
CAAGAAACCACCTGCGTCTTGGATGACGATCACTGCTATGTGTACATGGC
TATTGTACTGTAGCTTCTCCATAAACTTTCTGACCAAAAAAGCGATCCGC
TTCGTAGAATCATATGATgaaattcgaaaaagaaaacTAGGGAAAACACA
AAAGACAAATTTACGGCGCCTCATTGTAGCGAAACGTATGTGGCTTATCT
TTTCTATCATTTGGCTACCATACGGACTCGTCAACATCTTACAGACTATC
ATGAGCGAAAAAATATACGAACATCTGAATGCCGTTTCCCGGGGCATCAC
ATTTTGCTCTTTCGTGGTAATACCCTGGGTTTATTACTTCATGGACAAGA
ACTATGCTCAGTTTATCAATAAAAGAACTGAATGTTTTAGGAGGTGGATT
CCGTGCCCTAGAAAGACACGGATCGAGGAAATGAGACGCGGAAGGGCCAG
CACGATATCTACAGTAGGAGCGTCACGTATCGTCGTCAGCACGTCCGATT
TCCCATCTTATGAGAATGAGAAAACTCAACCAATATAATGGACTCAAGTT
CAttgaataaatttaaattaaagattagattttttttattgtattttaga
gagagtattttgtaaatatatatttttttaattaaggAGTAGattagaat
tttatttttagaaaataatgTAGTGTCAATTGTTTAACATTAGAACCAAT
CGAATCAGAAGGAAATAGACTAAAATGAAATAAGGCATAACTTTAACGTT
GTAGAGTTTTCCCAGCTATTCAAAATCTAATAATGATTGTAGCTAAAAAC
TTGTTCCAAATGGTccaagaaaactttttgaaaaaaacagccTTTGATGT
TCAACCACAAGAAGAAAATGCACAGATTATGATGC Run BLAST on NCBI protein sequence of TCONS_00008777-protein >TCONS_00008777-protein ID=TCONS_00008777-protein|Name=TCONS_00008777-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MNCSLYLVHDTVTMVMCGFGIIVTIMAFLSNLVMALYFAQMKRHPGGMIY
YKAIIGISMTASIIGQPLETANTLFKTSRLYLNLSSNFCLFFFFCATYHC
IAGLTFERYFAIKLEGHKKKMEKNVLTIVLVFLVIAMCIPKFYNLYHIIL
ARDHCKKPPASWMTITAMCTWLLYCSFSINFLTKKAIRFVESYDEIRKRK
LGKTQKTNLRRLIVAKRMWLIFSIIWLPYGLVNILQTIMSEKIYEHLNAV
SRGITFCSFVVIPWVYYFMDKNYAQFINKRTECFRRWIPCPRKTRIEEMR
RGRASTISTVGASRIVVSTSDFPSYENEKTQPI Run BLAST on NCBI transcript from alignment at sc0000087:320205..322449- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008777 ID=TCONS_00008777|Name=TCONS_00008777|organism=Clytia hemisphaerica|type=transcript|length=2245bp|location=Sequence derived from alignment at sc0000087:320205..322449- (Clytia hemisphaerica)
TTCATTTTTCTTTTACCAAAGTTGGAAGTAACCTTTAACAGTTGAATATA
GGGTTTCAGCCCCTAGGAAGGTGAAATTACTTTTATTTCTGAATGTTGAA
CAAACTATATTTACTTTACAATCCTCAGTTGGTAAGCTTCTTAAATCCAC
AGGGGATTGGTTTCACATATACTTAGACAAATGAATTCACAGCGAAATTC
TTTGAAGGATTTCATATGTCAAACTGCCAGGCAACTGTAATGAAACGTTT
TTAAAAATAATTTTCTATGCAACTTTCTCAAAGTAAAGTTCAATTTTATC
GAGTGGTCGAATTGGGAGGAGGATGTTTCTTGCCTGGAATAAAATATTTC
GCTAAACTATAATTGGACTTTATCCTACTTTGAGCACAAAAGGTGTTTTT
TCAATATACTTTTTTCTAGAGCTCAATAATATTAGAAATTTAATAAAAAT
CAACGAGAAGCAACAATATGGAATAATAAAACATTGTGATCTAGAATGAA
AAATTCATCAGAATTTGAAAGAAAACATACCAGAAAATGAATTGTTCCTT
ATATCTGGTACACGATACTGTCACTATGGTAATGTGTGGTTTTGGTATCA
TAGTTACCATAATGGCCTTCCTTAGCAACCTGGTGATGGCGTTGTATTTT
GCTCAAATGAAAAGACACCCTGGTGGAATGATTTATTACAAAGCGATAAT
CGGTATCTCTATGACAGCTTCTATCATAGGTAGGTAGAATAGTTTTCTTT
TAACTTGGGTTTCAACAAAGTTTGTCTTGGTTTCTTTTTAACGAACTTTA
CTTTTGTGGGATTATTACCTTGAAACCGATTGAAGAATGTGGTTTCTTTT
CTGCACTTATTCTATTCGAACGTTTGGTTTCATAAGTAAAATTCGTATCC
GTATCGAAGTAAAGTTCCATATCTAATCAAGGACCATCGTCGACTATTAA
CACAAAACTAAAGATCAAAGCTAATTTCTCAAGCAATCANAAGTTCCATA
TCTAATCAAGGACCATCGTCGACTATTAACACAAAACTAAAGATCAAAGT
TAATTTCTCAAGCAATCAACACTAATTATTCCATTCCAGGTCAACCGTTG
GAGACGGCAAACACTCTCTTCAAGACATCCAGACTGTATCTCAACCTATC
CAGTAACTTTTGTTTGTTCTTCTTCTTCTGCGCAACCTATCATTGTATCG
CTGGGTTGACGTTCGAGCGTTATTTCGCGATCAAGCTCGAAGGTCACAAG
AAGAAAATGGAGAAAAATGTACTGACCATTGTCCTCGTATTCTTAGTAAT
AGCAATGTGTATACCGAAATTTTATAACTTGTATCATATCATATTGGCCA
GGGATCATTGCAAGAAACCACCTGCGTCTTGGATGACGATCACTGCTATG
TGTACATGGCTATTGTACTGTAGCTTCTCCATAAACTTTCTGACCAAAAA
AGCGATCCGCTTCGTAGAATCATATGATGAAATTCGAAAAAGAAAACTAG
GGAAAACACAAAAGACAAATTTACGGCGCCTCATTGTAGCGAAACGTATG
TGGCTTATCTTTTCTATCATTTGGCTACCATACGGACTCGTCAACATCTT
ACAGACTATCATGAGCGAAAAAATATACGAACATCTGAATGCCGTTTCCC
GGGGCATCACATTTTGCTCTTTCGTGGTAATACCCTGGGTTTATTACTTC
ATGGACAAGAACTATGCTCAGTTTATCAATAAAAGAACTGAATGTTTTAG
GAGGTGGATTCCGTGCCCTAGAAAGACACGGATCGAGGAAATGAGACGCG
GAAGGGCCAGCACGATATCTACAGTAGGAGCGTCACGTATCGTCGTCAGC
ACGTCCGATTTCCCATCTTATGAGAATGAGAAAACTCAACCAATATAATG
GACTCAAGTTCATTGAATAAATTTAAATTAAAGATTAGATTTTTTTTATT
GTATTTTAGAGAGAGTATTTTGTAAATATATATTTTTTTAATTAAGGAGT
AGATTAGAATTTTATTTTTAGAAAATAATGTAGTGTCAATTGTTTAACAT
TAGAACCAATCGAATCAGAAGGAAATAGACTAAAATGAAATAAGGCATAA
CTTTAACGTTGTAGAGTTTTCCCAGCTATTCAAAATCTAATAATGATTGT
AGCTAAAAACTTGTTCCAAATGGTCCAAGAAAACTTTTTGAAAAAAACAG
CCTTTGATGTTCAACCACAAGAAGAAAATGCACAGATTATGATGC Coding sequence (CDS) from alignment at sc0000087:320205..322449- >TCONS_00008777 ID=TCONS_00008777|Name=TCONS_00008777|organism=Clytia hemisphaerica|type=CDS|length=2004bp|location=Sequence derived from alignment at sc0000087:320205..322449- (Clytia hemisphaerica)
GTCAACCGTTGGAGACGGCAAACACTCTCTTCAAGACATCCAGACTGTAT
CTCAACCTATCCAGTAACTTTTGTTTGTTCTTCTTCTTCTGCGCAACCTA
TCATTGTATCGCTGGGTTGACGTTCGAGCGTTATTTCGCGATCAAGCTCG
AAGGTCACAAGAAGAAAATGGAGAAAAATGTACTGACCATTGTCCTCGTA
TTCTTAGTAATAGCAATGTGTATACCGAAATTTTATAACTTGTATCATAT
CATATTGGCCAGGGATCATTGCAAGAAACCACCTGCGTCTTGGATGACGA
TCACTGCTATGTGTACATGGCTATTGTACTGTAGCTTCTCCATAAACTTT
CTGACCAAAAAAGCGATCCGCTTCGTAGAATCATATGATGAAATTCGAAA
AAGAAAACTAGGGAAAACACAAAAGACAAATTTACGGCGCCTCATTGTAG
CGAAACGTATGTGGCTTATCTTTTCTATCATTTGGCTACCATACGGACTC
GTCAACATCTTACAGACTATCATGAGCGAAAAAATATACGAACATCTGAA
TGCCGTTTCCCGGGGCATCACATTTTGCTCTTTCGTGGTAATACCCTGGG
TTTATTACTTCATGGACAAGAACTATGCTCAGTTTATCAATAAAAGAACT
GAATGTTTTAGGAGGTGGATTCCGTGCCCTAGAAAGACACGGATCGAGGA
AATGAGACGCGGAAGGGCCAGCACGATATCTACAGTAGGAGCGTCACGTA
TCGTCGTCAGCACGTCCGATTTCCCATCTTATGAGAATGAGAAAACTCAA
CCAATATAAATGAATTGTTCCTTATATCTGGTACACGATACTGTCACTAT
GGTAATGTGTGGTTTTGGTATCATAGTTACCATAATGGCCTTCCTTAGCA
ACCTGGTGATGGCGTTGTATTTTGCTCAAATGAAAAGACACCCTGGTGGA
ATGATTTATTACAAAGCGATAATCGGTATCTCTATGACAGCTTCTATCAT
AGGTCAACCGTTGGAGACGGCAAACACTCTCTTCAAGACATCCAGACTGT
ATCTCAACCTATCCAGTAACTTTTGTTTGTTCTTCTTCTTCTGCGCAACC
TATCATTGTATCGCTGGGTTGACGTTCGAGCGTTATTTCGCGATCAAGCT
CGAAGGTCACAAGAAGAAAATGGAGAAAAATGTACTGACCATTGTCCTCG
TATTCTTAGTAATAGCAATGTGTATACCGAAATTTTATAACTTGTATCAT
ATCATATTGGCCAGGGATCATTGCAAGAAACCACCTGCGTCTTGGATGAC
GATCACTGCTATGTGTACATGGCTATTGTACTGTAGCTTCTCCATAAACT
TTCTGACCAAAAAAGCGATCCGCTTCGTAGAATCATATGATGAAATTCGA
AAAAGAAAACTAGGGAAAACACAAAAGACAAATTTACGGCGCCTCATTGT
AGCGAAACGTATGTGGCTTATCTTTTCTATCATTTGGCTACCATACGGAC
TCGTCAACATCTTACAGACTATCATGAGCGAAAAAATATACGAACATCTG
AATGCCGTTTCCCGGGGCATCACATTTTGCTCTTTCGTGGTAATACCCTG
GGTTTATTACTTCATGGACAAGAACTATGCTCAGTTTATCAATAAAAGAA
CTGAATGTTTTAGGAGGTGGATTCCGTGCCCTAGAAAGACACGGATCGAG
GAAATGAGACGCGGAAGGGCCAGCACGATATCTACAGTAGGAGCGTCACG
TATCGTCGTCAGCACGTCCGATTTCCCATCTTATGAGAATGAGAAAACTC
AACCAATATAAATGAATTGTTCCTTATATCTGGTACACGATACTGTCACT
ATGGTAATGTGTGGTTTTGGTATCATAGTTACCATAATGGCCTTCCTTAG
CAACCTGGTGATGGCGTTGTATTTTGCTCAAATGAAAAGACACCCTGGTG
GAATGATTTATTACAAAGCGATAATCGGTATCTCTATGACAGCTTCTATC
ATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008777-exon-sc0000087-1575043694:321721..322449 | TCONS_00008777-exon-sc0000087-1575043694:321721..322449 | Clytia hemisphaerica | exon |
| TCONS_00008777-exon-sc0000087-1575043694:320205..321360 | TCONS_00008777-exon-sc0000087-1575043694:320205..321360 | Clytia hemisphaerica | exon |
| TCONS_00008777-exon-sc0000087-1510915933:321721..322449 | TCONS_00008777-exon-sc0000087-1510915933:321721..322449 | Clytia hemisphaerica | exon |
| TCONS_00008777-exon-sc0000087-1510915933:320205..321360 | TCONS_00008777-exon-sc0000087-1510915933:320205..321360 | Clytia hemisphaerica | exon |
| TCONS_00008777-exon-sc0000087-1491911889:321721..322449 | TCONS_00008777-exon-sc0000087-1491911889:321721..322449 | Clytia hemisphaerica | exon |
| TCONS_00008777-exon-sc0000087-1491911889:320205..321360 | TCONS_00008777-exon-sc0000087-1491911889:320205..321360 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:320205..322449 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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