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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008776 ID=TCONS_00008776|Name=TCONS_00008776|organism=Clytia hemisphaerica|type=transcript|length=1402bpRun BLAST on NCBI transcript from alignment at sc0000087:285498..301084- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008776 ID=TCONS_00008776|Name=TCONS_00008776|organism=Clytia hemisphaerica|type=transcript|length=15587bp|location=Sequence derived from alignment at sc0000087:285498..301084- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008776 vs. Swiss-Prot (Human)
Match: SUCA (Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens GN=SUCLG1 PE=1 SV=4) HSP 1 Score: 362.073 bits (928), Expect = 2.440e-121 Identity = 219/303 (72.28%), Postives = 259/303 (85.48%), Query Frame = 3
Query: 171 RNASYDATRPALAINKNTKVICQGFTGRQGTFHSEQAIAYGTNMVGGVNPKKAGSEHIGLPVFASVREAREATNCDATXXXXXXXXXXXXXXXXXXXXXXXXTCITEGIPQQDMVKVKHVLERQSKSRLIGPNCPGIIKPGECKIGIMPGHIHRPGSVGIVSRSGTLTYEAVHQTTHVALGQSLCVGIGGDPFNGTNFVDCLDVFLKDPETKXXXXXXXXXXXXXXRAAEFLKQNNVGENKKPIVGFIAGLTAPPGRRMXXXXXXXXXXXXXXEDKIKALEDAGVVVTRSPAQLGSTLRRVFD 1079
R+ SY A+R L ++KNTK+ICQGFTG+QGTFHS+QA+ YGT +VGG P K G H+GLPVF +V+EA+E T A+VIYVPPP AAAAI EA+EAE+PL+ CITEGIPQQDMV+VKH L RQ K+RLIGPNCPG+I PGECKIGIMPGHIH+ G +GIVSRSGTLTYEAVHQTT V LGQSLCVGIGGDPFNGT+F+DCL++FL D T+ +I+IGEIGG AEE AAEFLKQ+N G N KP+V FIAGLTAPPGRRMGHAGAII+GGKGGA++KI AL+ AGVVV+ SPAQLG+T+ + F+
Sbjct: 39 RHCSYTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVRVKHKLLRQEKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHNSGPNSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFE 341 The following BLAST results are available for this feature:
BLAST of TCONS_00008776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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