TCONS_00008762 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008762
Unique NameTCONS_00008762
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length961

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008762 ID=TCONS_00008762|Name=TCONS_00008762|organism=Clytia hemisphaerica|type=transcript|length=961bp
CGAGAAATCTCCTGTTGTCGAACGTCTCCAGATAAAGGAAAGATGATGCA
AGCAATCTCGAGACGTGTCTTTTCAGTTACTACATCTGCAGCTCGAAGAT
CAAATTTACAGCTCGAAGCAAATTTCCATTCAAGCATTTTATTGGCTTCG
GATACTGGCTCCAAATACGCTATTAAGCTTAAACCTGAATTTGCCAACCC
AAAATGGATCAATAGACATCAGTTCATGTTTAACTTTTTGGACAAAAACG
GCGATGGAAAAATAACATTGGATGAAATTGTCTCCAAGGCTTCAGATGAT
ATTTGTGCTAAACTTGACGCAACACCAGAACAAACCCAACGTCACCAAGA
GGCTgttgagaattttttcaagaaaatgggTATGGATTACGGCAAAGAGG
TTGAATTTCCAGATTTTGTTAAAGGATGGGAAGAATTAGCAAAGCATGAT
TTGAAACTTTGGTCACAAAACAAACGCACTTTAATTCGTGATTGGGGAGA
TGCCGTGTTTGATATTTTCGATAAAGACGGAAGTGGATCGATTAGTTTAG
ACGAATGGAAGGCTTACGGACGAATCTCTGGTATCTGTCCTTCAGACGAA
GACGCTGAGCGAACCTTCGAAATATGCGATTTGGATAATAGTGGAAAACT
TGACGTTGATGAGATGACCAGACAACATTTGGGATTCTGGTACACTTTGG
ATCCTAACGCTGATGGTCTATATGGTGATTTTGTTCCCtaaattttagaa
tattttgtAATATACTGTTTCTGTTCAATCTAGAATTCCTTATGAAATTA
TTAAATATATTGTCTATCCTCAATAAGACTCTAACTGATATTATCTTCTT
TTCTCGTATTTCTTTTACTCCTGTTATTATAGCCTTGAAACGCACTAACT
AAATGGTTTATAGGGTTCcatccattgagtttaaagcccggagggctaga
gtagaatggtt
Run BLAST on NCBI

protein sequence of TCONS_00008762-protein

>TCONS_00008762-protein ID=TCONS_00008762-protein|Name=TCONS_00008762-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
REISCCRTSPDKGKMMQAISRRVFSVTTSAARRSNLQLEANFHSSILLAS
DTGSKYAIKLKPEFANPKWINRHQFMFNFLDKNGDGKITLDEIVSKASDD
ICAKLDATPEQTQRHQEAVENFFKKMGMDYGKEVEFPDFVKGWEELAKHD
LKLWSQNKRTLIRDWGDAVFDIFDKDGSGSISLDEWKAYGRISGICPSDE
DAERTFEICDLDNSGKLDVDEMTRQHLGFWYTLDPNADGLYGDFVP
Run BLAST on NCBI

transcript from alignment at sc0000087:145916..147680-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008762 ID=TCONS_00008762|Name=TCONS_00008762|organism=Clytia hemisphaerica|type=transcript|length=1765bp|location=Sequence derived from alignment at sc0000087:145916..147680- (Clytia hemisphaerica)
CGAGAAATCTCCTGTTGTCGAACGTCTCCAGGTATATGAATTTTTTACAG
ATCGAAAATTATTACGTTGAAGTTTATAGTTTTAGAGTTTGTTCGTGTAG
ATTCTAATGAATATCTATCTATAATTCTTTTCAATGTCTTATCAAATTTG
AAAAACAGTAGTGCCATTTCAGGAAAGCGCATTAGTTTTGGAAACGGGAA
AAATTTAAGAAAAATTTCAAAAGTAATTCAATTAACTGAATTAAGGGCTC
TGACCATAGTGAATTTTCAATTTTTACCACGTACAAAATATAGATTTCTA
CCTGATGTAGCCCACAAAACTGTGGCATTTCAACTTTGAAAAGCTTATTT
TCGACGAAGAAAAAACATATTGAACATTTTTTTACGGTAGATGGTGTACC
GAACCATAACAAGATTTTCGGAAAATTTTTCTAAAAGCTTACTTGTCTCA
ATCTTGAAAATAGTGCTTTTTGAGCAGTTTTTTGATGCATTAATTTAGAA
AAAATTTTCCGAAAAATTTAAAACAGTTCAATTCTTTGCGGACAGTTTGA
AAAAACTCGAAATAAAAAGGTTAATTACTCATTAAAACTTAGCACTTTTT
ATAAAAGAAGGTAATGCAACATATTATTAACGTCTTTTTAAAGTTCATAG
CGTCATTTTTGCAATTAAATTCCTAATTACTCTTAAGGGATTTGATTAAA
CAGCAATTCATAAAGGTCATTCTTTGCTAAAAGTGTTAAAGTTCAAATAC
TGAAGTCAATTTTTCGACTATGGTCAGAGCGCTTAATTGAATTAATTGAA
TTTTAAACTCAATGTCTGAATATCTCATTTTTTAGATAAAGGAAAGATGA
TGCAAGCAATCTCGAGACGTGTCTTTTCAGTTACTACATCTGCAGCTCGA
AGATCAAATTTACAGCTCGAAGCAAATTTCCATTCAAGCATTTTATTGGC
TTCGGATACTGGCTCCAAATACGCTATTAAGCTTAAACCTGAATTTGCCA
ACCCAAAATGGATCAATAGACATCAGTTCATGTTTAACTTTTTGGACAAA
AACGGCGATGGAAAAATAACATTGGATGAAATTGTCTCCAAGGCTTCAGA
TGATATTTGTGCTAAACTTGACGCAACACCAGAACAAACCCAACGTCACC
AAGAGGCTGTTGAGAATTTTTTCAAGAAAATGGGTATGGATTACGGCAAA
GAGGTTGAATTTCCAGATTTTGTTAAAGGATGGGAAGAATTAGCAAAGCA
TGATTTGAAACTTTGGTCACAAAACAAACGCACTTTAATTCGTGATTGGG
GAGATGCCGTGTTTGATATTTTCGATAAAGACGGAAGTGGATCGATTAGT
TTAGACGAATGGAAGGCTTACGGACGAATCTCTGGTATCTGTCCTTCAGA
CGAAGACGCTGAGCGAACCTTCGAAATATGCGATTTGGATAATAGTGGAA
AACTTGACGTTGATGAGATGACCAGACAACATTTGGGATTCTGGTACACT
TTGGATCCTAACGCTGATGGTCTATATGGTGATTTTGTTCCCTAAATTTT
AGAATATTTTGTAATATACTGTTTCTGTTCAATCTAGAATTCCTTATGAA
ATTATTAAATATATTGTCTATCCTCAATAAGACTCTAACTGATATTATCT
TCTTTTCTCGTATTTCTTTTACTCCTGTTATTATAGCCTTGAAACGCACT
AACTAAATGGTTTATAGGGTTCCATCCATTGAGTTTAAAGCCCGGAGGGC
TAGAGTAGAATGGTT

Coding sequence (CDS) from alignment at sc0000087:145916..147680-

>TCONS_00008762 ID=TCONS_00008762|Name=TCONS_00008762|organism=Clytia hemisphaerica|type=CDS|length=1482bp|location=Sequence derived from alignment at sc0000087:145916..147680- (Clytia hemisphaerica)
ATAAAGGAAAGATGATGCAAGCAATCTCGAGACGTGTCTTTTCAGTTACT
ACATCTGCAGCTCGAAGATCAAATTTACAGCTCGAAGCAAATTTCCATTC
AAGCATTTTATTGGCTTCGGATACTGGCTCCAAATACGCTATTAAGCTTA
AACCTGAATTTGCCAACCCAAAATGGATCAATAGACATCAGTTCATGTTT
AACTTTTTGGACAAAAACGGCGATGGAAAAATAACATTGGATGAAATTGT
CTCCAAGGCTTCAGATGATATTTGTGCTAAACTTGACGCAACACCAGAAC
AAACCCAACGTCACCAAGAGGCTGTTGAGAATTTTTTCAAGAAAATGGGT
ATGGATTACGGCAAAGAGGTTGAATTTCCAGATTTTGTTAAAGGATGGGA
AGAATTAGCAAAGCATGATTTGAAACTTTGGTCACAAAACAAACGCACTT
TAATTCGTGATTGGGGAGATGCCGTGTTTGATATTTTCGATAAAGACGGA
AGTGGATCGATTAGTTTAGACGAATGGAAGGCTTACGGACGAATCTCTGG
TATCTGTCCTTCAGACGAAGACGCTGAGCGAACCTTCGAAATATGCGATT
TGGATAATAGTGGAAAACTTGACGTTGATGAGATGACCAGACAACATTTG
GGATTCTGGTACACTTTGGATCCTAACGCTGATGGTCTATATGGTGATTT
TGTTCCCTAACGAGAAATCTCCTGTTGTCGAACGTCTCCAGATAAAGGAA
AGATGATGCAAGCAATCTCGAGACGTGTCTTTTCAGTTACTACATCTGCA
GCTCGAAGATCAAATTTACAGCTCGAAGCAAATTTCCATTCAAGCATTTT
ATTGGCTTCGGATACTGGCTCCAAATACGCTATTAAGCTTAAACCTGAAT
TTGCCAACCCAAAATGGATCAATAGACATCAGTTCATGTTTAACTTTTTG
GACAAAAACGGCGATGGAAAAATAACATTGGATGAAATTGTCTCCAAGGC
TTCAGATGATATTTGTGCTAAACTTGACGCAACACCAGAACAAACCCAAC
GTCACCAAGAGGCTGTTGAGAATTTTTTCAAGAAAATGGGTATGGATTAC
GGCAAAGAGGTTGAATTTCCAGATTTTGTTAAAGGATGGGAAGAATTAGC
AAAGCATGATTTGAAACTTTGGTCACAAAACAAACGCACTTTAATTCGTG
ATTGGGGAGATGCCGTGTTTGATATTTTCGATAAAGACGGAAGTGGATCG
ATTAGTTTAGACGAATGGAAGGCTTACGGACGAATCTCTGGTATCTGTCC
TTCAGACGAAGACGCTGAGCGAACCTTCGAAATATGCGATTTGGATAATA
GTGGAAAACTTGACGTTGATGAGATGACCAGACAACATTTGGGATTCTGG
TACACTTTGGATCCTAACGCTGATGGTCTATATGGTGATTTTGTTCCCTA
ACGAGAAATCTCCTGTTGTCGAACGTCTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004911XLOC_004911Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008762-proteinTCONS_00008762-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008762-exon-sc0000087-1575043694:147650..147680TCONS_00008762-exon-sc0000087-1575043694:147650..147680Clytia hemisphaericaexon
TCONS_00008762-exon-sc0000087-1575043694:145916..146845TCONS_00008762-exon-sc0000087-1575043694:145916..146845Clytia hemisphaericaexon
TCONS_00008762-exon-sc0000087-1510915933:147650..147680TCONS_00008762-exon-sc0000087-1510915933:147650..147680Clytia hemisphaericaexon
TCONS_00008762-exon-sc0000087-1510915933:145916..146845TCONS_00008762-exon-sc0000087-1510915933:145916..146845Clytia hemisphaericaexon
TCONS_00008762-exon-sc0000087-1491911889:147650..147680TCONS_00008762-exon-sc0000087-1491911889:147650..147680Clytia hemisphaericaexon
TCONS_00008762-exon-sc0000087-1491911889:145916..146845TCONS_00008762-exon-sc0000087-1491911889:145916..146845Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:145916..147680 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1799.72	1824.11	959.118	833.97	0.572598	0.754124	0.788509	0.681409	0.238535	2.36371	0.334582	0.157101	2.20044	2.57632	2.87934	2.0484	0.42527	0.94442	0	0	2.82865	1.86916	586.282	505.086	0.101334	0.0904356	30.3397	45.0135	263.699	302.093
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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