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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008758 ID=TCONS_00008758|Name=TCONS_00008758|organism=Clytia hemisphaerica|type=transcript|length=2020bp
atcatccgcacatacccagcatctGTTTATGTTTTTTAAGTACCCCTTCG
GGATTCCTTCCctatttttcctcatttttctatgtcttttttatttttca
gattttaaataataaaaaaaaagaaacaatattATGAAATCCAGAATCTG
GTTTATGCTTTTTGGACTTGCATCTACTGTCGCCCTCTTGGTGAACAAGT
ATGTCCTCTGGAAATTGAAATTCACTTATCCAACAGTCTATCAAAGCTGG
CAAATGTCTTTCGCATCTGTGATGTTCTTCTCGGCTCACATGTTTGGTAA
AATGCCTTCCAAAGCTTTAAATAGTGGAATTATTTATCCCTGGTTTCCAG
CCATACTTCTTTTCTCTACCAGTATTTATAGTGGTTCAGTAAGTCTATCA
CGGCTGCCTATccctgtttttttatttttgcaacaAGGGGTTTTACAAAG
CATAATAGTATTGatgaaatttcaacaacaaaatggACCTGAAAAGTTGG
TATCCCTTTTAATGAATTCAAAGAAAGGTTTATTAATGATAGTTAATTGT
TTTTGTATTGTTGGCATAATTTTTCTAATGAAAACTGAACTGGTATTCAA
TTTTAAGTGGATGTTGATACACTGTATAGCAAGTTGCAGTTATTCGGTGT
TTGCCATCAGACATCAACATTTAGAACTTCAAGAATCGGATAAACTTCTG
ATCAACTCTATATTCAGCATAATAGTGTTGTTAACAGTTGGCATGACTAC
TGGGGAAACGAGCGTCGTCTTTAAATTTCCGTTTTTATATCACCGTATAT
TTTTGTTGGCTTGTCTTTGTAGTGGAGTATTTGGTGCACTTCTTATGGTC
AGTTATTCTAAGCTATGTAGCGAACTCAAGATCGAAAAAGTACGATTTGG
GAATACTATAATCATGTTATGGGTGTCCGGTatatccttttttgtttttg
agaatGAATTGACTGCTCAATTGACATTCTTGGCTTTCTTTGGACTGTGC
TCTACTTGTTACTTGTGTTATTTGATTCAAAATGAATTGCAGCAACAATC
TACACCTATTCCTATAAAGGAAATTGTTATATGATGGTGGTTTtgtaatt
atttctttaaatattAGTTTTTCTATTCAACCCTATTATAGTTTTGCCTA
CTAAAAGAGCCTcgaattcaaattttgactagTTTTTTGACTAGTTTTGC
TCTTCTATCTTTGTAGGTATCCAGTAACTTAGTTTACTATTAAAATTCTT
ATCTTTAAAACTAGATCAGCTATATTGATGGAATTTTCAGGGAATGCTCC
AAATAGGTTATTGGTTGAGTACACCTGTATAGTTTAAAGAGGGGACTTTA
ACGAGTATAatctagcaaaaaaaaatctacatCCAATTTCAATTTAAGAG
GCTTTTTTGGCACACCCTGGTAATCTATAATTATTAGCTGTAGCTATAAA
TATTATAAGGTAGTTGGTTTTATACAACCATTGCCCTGGaaagtttaaaa
caaaaactgaaactttgattgaatatttttgttgtttttcctaCGCCAGG
ATTATGGAACTTTTTTAGAAATAGCATTCAACACAACTTGTATTAATATC
ATCAAGATAGTGtatttatttttggaaattatttattatttattaaatCC
ATTTTTCAGATCATTTTTCTTCTAGTAGGGAGAATTCTGTTTCACTAGCT
ACCTGGGGAAGGGGCACTGGATTTAAGAACGATCGTATGCGCGACTCAAA
ATTATTCCTTTAAAACGGACCCACTATGCCTCGTaacaaagtgaaatttt
tcaaagatcaTTTACTATGACATAAAAATTCGTTCATTTTCCAGCTTTTT
TACTTGAGTTTAGACCCCTTTTCAGAGTTTTAGAACTATTCCTTACCATT
AtaccaaatttttcatttgttttaaaaCGCAATTAAAATAATGGTTTTCG
TCTAAACAGCCTACATCACTTTATGCAGCTTAAAAATAGCCTGAATCATG
GTCAGCATGTTTCACCAGGG Run BLAST on NCBI transcript from alignment at sc0000087:100573..102592- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008758 ID=TCONS_00008758|Name=TCONS_00008758|organism=Clytia hemisphaerica|type=transcript|length=2020bp|location=Sequence derived from alignment at sc0000087:100573..102592- (Clytia hemisphaerica)
ATCATCCGCACATACCCAGCATCTGTTTATGTTTTTTAAGTACCCCTTCG
GGATTCCTTCCCTATTTTTCCTCATTTTTCTATGTCTTTTTTATTTTTCA
GATTTTAAATAATAAAAAAAAAGAAACAATATTATGAAATCCAGAATCTG
GTTTATGCTTTTTGGACTTGCATCTACTGTCGCCCTCTTGGTGAACAAGT
ATGTCCTCTGGAAATTGAAATTCACTTATCCAACAGTCTATCAAAGCTGG
CAAATGTCTTTCGCATCTGTGATGTTCTTCTCGGCTCACATGTTTGGTAA
AATGCCTTCCAAAGCTTTAAATAGTGGAATTATTTATCCCTGGTTTCCAG
CCATACTTCTTTTCTCTACCAGTATTTATAGTGGTTCAGTAAGTCTATCA
CGGCTGCCTATCCCTGTTTTTTTATTTTTGCAACAAGGGGTTTTACAAAG
CATAATAGTATTGATGAAATTTCAACAACAAAATGGACCTGAAAAGTTGG
TATCCCTTTTAATGAATTCAAAGAAAGGTTTATTAATGATAGTTAATTGT
TTTTGTATTGTTGGCATAATTTTTCTAATGAAAACTGAACTGGTATTCAA
TTTTAAGTGGATGTTGATACACTGTATAGCAAGTTGCAGTTATTCGGTGT
TTGCCATCAGACATCAACATTTAGAACTTCAAGAATCGGATAAACTTCTG
ATCAACTCTATATTCAGCATAATAGTGTTGTTAACAGTTGGCATGACTAC
TGGGGAAACGAGCGTCGTCTTTAAATTTCCGTTTTTATATCACCGTATAT
TTTTGTTGGCTTGTCTTTGTAGTGGAGTATTTGGTGCACTTCTTATGGTC
AGTTATTCTAAGCTATGTAGCGAACTCAAGATCGAAAAAGTACGATTTGG
GAATACTATAATCATGTTATGGGTGTCCGGTATATCCTTTTTTGTTTTTG
AGAATGAATTGACTGCTCAATTGACATTCTTGGCTTTCTTTGGACTGTGC
TCTACTTGTTACTTGTGTTATTTGATTCAAAATGAATTGCAGCAACAATC
TACACCTATTCCTATAAAGGAAATTGTTATATGATGGTGGTTTTGTAATT
ATTTCTTTAAATATTAGTTTTTCTATTCAACCCTATTATAGTTTTGCCTA
CTAAAAGAGCCTCGAATTCAAATTTTGACTAGTTTTTTGACTAGTTTTGC
TCTTCTATCTTTGTAGGTATCCAGTAACTTAGTTTACTATTAAAATTCTT
ATCTTTAAAACTAGATCAGCTATATTGATGGAATTTTCAGGGAATGCTCC
AAATAGGTTATTGGTTGAGTACACCTGTATAGTTTAAAGAGGGGACTTTA
ACGAGTATAATCTAGCAAAAAAAAATCTACATCCAATTTCAATTTAAGAG
GCTTTTTTGGCACACCCTGGTAATCTATAATTATTAGCTGTAGCTATAAA
TATTATAAGGTAGTTGGTTTTATACAACCATTGCCCTGGAAAGTTTAAAA
CAAAAACTGAAACTTTGATTGAATATTTTTGTTGTTTTTCCTACGCCAGG
ATTATGGAACTTTTTTAGAAATAGCATTCAACACAACTTGTATTAATATC
ATCAAGATAGTGTATTTATTTTTGGAAATTATTTATTATTTATTAAATCC
ATTTTTCAGATCATTTTTCTTCTAGTAGGGAGAATTCTGTTTCACTAGCT
ACCTGGGGAAGGGGCACTGGATTTAAGAACGATCGTATGCGCGACTCAAA
ATTATTCCTTTAAAACGGACCCACTATGCCTCGTAACAAAGTGAAATTTT
TCAAAGATCATTTACTATGACATAAAAATTCGTTCATTTTCCAGCTTTTT
TACTTGAGTTTAGACCCCTTTTCAGAGTTTTAGAACTATTCCTTACCATT
ATACCAAATTTTTCATTTGTTTTAAAACGCAATTAAAATAATGGTTTTCG
TCTAAACAGCCTACATCACTTTATGCAGCTTAAAAATAGCCTGAATCATG
GTCAGCATGTTTCACCAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008758-exon-sc0000087-1575043694:100573..102592 | TCONS_00008758-exon-sc0000087-1575043694:100573..102592 | Clytia hemisphaerica | exon |
| TCONS_00008758-exon-sc0000087-1510915933:100573..102592 | TCONS_00008758-exon-sc0000087-1510915933:100573..102592 | Clytia hemisphaerica | exon |
| TCONS_00008758-exon-sc0000087-1491911889:100573..102592 | TCONS_00008758-exon-sc0000087-1491911889:100573..102592 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:100573..102592 - |
Blast
BLAST of TCONS_00008758 vs. Swiss-Prot (Human)
Match: TM241 (Transmembrane protein 241 OS=Homo sapiens GN=TMEM241 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.671e-23 Identity = 82/266 (30.83%), Postives = 124/266 (46.62%), Query Frame = 2
Query: 188 LVNKYVLWKLKFTYPTVYQSWQMSFASVMFFSAHMFGKMPSKALNSGIIYPWFPAILLFSTSIYSGSVSLSRLPIPVFLFLQQGVLQSIIVLMKFQQQNGPEKLVSLLMNSKKGLLMIVNCFCIVGIIFLMKTELVFN---FKWMLIHCIASCSYSVFAIRHQHLELQESDKLLINSIFSIIVLLTVGMTTGETSVVFKFPFLYHRIFLLACLCSGVFGALLMVSYSKLCSELKIEKVRFGNTIIMLWVSGISFFVFENELTAQLT 976
L NKYVL LKFTYPT++Q WQ ++ + G + + + + W PA +LF IY+GS +LSRL IPVFL L + +++ +Q+ EK + S LL C L + FN + W +IH + +Y + + L + D+ +N IFS+++L TG+ V FPFLY F +C SG G LM S KL + L + + +G+S +F+ LT+ T
Sbjct: 21 LTNKYVLSVLKFTYPTLFQGWQTLIGGLLLHVSWKLGWVEINSSSRSHVLVWLPASVLFVGIIYAGSRALSRLAIPVFLTLHN---VAEVIICGYQKCFQKEKTSPAKICSALLLLAAAGC--------LPFNDSQFNPDGYFWAIIHLLCVGAYKILQKSQKPSALSDIDQQYLNYIFSVVLLAFASHPTGDLFSVLDFPFLYFYRFHGSCCASGFLGFFLMFSTVKLKNLLAPGQCAAWIFFAKIITAGLSILLFDAILTSATT 275
The following BLAST results are available for this feature:
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