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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008752 ID=TCONS_00008752|Name=TCONS_00008752|organism=Clytia hemisphaerica|type=transcript|length=2101bpRun BLAST on NCBI transcript from alignment at sc0000087:1820..25571- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008752 ID=TCONS_00008752|Name=TCONS_00008752|organism=Clytia hemisphaerica|type=transcript|length=23752bp|location=Sequence derived from alignment at sc0000087:1820..25571- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008752 vs. Swiss-Prot (Human)
Match: TRUA (tRNA pseudouridine synthase A, mitochondrial OS=Homo sapiens GN=PUS1 PE=1 SV=3) HSP 1 Score: 310.071 bits (793), Expect = 3.581e-97 Identity = 157/325 (48.31%), Postives = 212/325 (65.23%), Query Frame = 3
Query: 570 VALLLSYCGAKYHGMQKN---PDVETIELKLLQALVKIGSIPEMHMQYYLDDNVNQLSFQRAARTDKGVSAVRQVASLKLIANDNFIEELNQALPKDIRSYGYERVTKTFDSKCACSGRSYEYLCPSFAFA-PDKNTMDSSYRISDEHLAFLNSLLAQYLGTHNFHNFTSGKHPSDKSANRYITKCEAKKPFECRAHEFIAIGITGQSFMIHQIRKMIGLCIAICRGFCSKEHIEAAWGFNKLDIPRAPGLGLLLERVEYQQYNEKYGNDGLHNPLTWQDVELEVERFKIECIWQSIMEEEIKKSPMVIWLKTLANHTYSTVGMN 1532
+ LL++Y G YHGMQ+N +TIE L+ ALV+ G IPE H +++ ++SFQR ARTDKGVSA QV SLK+ D+ +E++N LP IR G +RVT F+SK C R+Y YL P+FAFA D++ D +YR+S E L +N LLA Y GTHNFHNFTS K P D SA RYI + ++PF EF I + GQSFM+HQIRKM+GL +AI +G+ + +E +WG K+D+P+APGLGL+LERV +++YN+++GNDGLH PL W E +V FK E I+ +I+ E + M WL TL H +S +
Sbjct: 86 IVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENH-----GEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYPTIIGTERDERSMAQWLSTLPIHNFSATALT 405 The following BLAST results are available for this feature:
BLAST of TCONS_00008752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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