TCONS_00008744 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008744
Unique NameTCONS_00008744
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008744 ID=TCONS_00008744|Name=TCONS_00008744|organism=Clytia hemisphaerica|type=transcript|length=1439bp
CTCTATTCCCGTAGGACGTAATCTTCACGTCTCCCGTGAGGTTTAATTAA
ATCTTAACTGTctaatatctttttattcagttttgtctttaaaaattGGT
ACATGTGCATTAGTTGGTACAGCATTCAGTTGTAGTTAAGACGTTACAAG
CTTGGAGAAGTACAAACTGAAATCATGTTAAGAACAGCCATTTTCTTGAT
CTGTGCTGTGAACGTTGTGGTTGATGCAACAACATGCCCaACCCTTGGCA
ACGCCATCACACAAAAAGACATTTTGCATGCAGTCCGAGCATCCCAAGAA
GTTTACAATGACAATGTGGTCGAAGGATCAACTATCAACCAAACTCCTTT
CACAGTTGTCaagaaaattcatgaaaatttacACACTGATGCTGGAATAA
GAGTTTTAGTGGCTGACCATGGGAACACCAGAATGATCATCTATAGAGGA
ACTGACGGTGGAGCGCAACTTCTCATCGAAGGTGGAAGCGTGTTTCAAAG
GAAAACCGTTGTTCGGTACGGAAATCAAGACGTTAAAATCCTGAAATTCT
TCTGGGAAGCTTTTGAGCTTGTTTCGTACGGTTTAAGACCTTATATCACG
GATCCATCAAAGAAATATATTATTACTGGTCATTCTCTTGGTGGTGCTAT
GGCTTCGATTATGGCTCTCAATGGAACACAATTGTATCAAGGATCGATGT
GGGCGAATCCTCAATCAAGTTTGATTACTTTTGGTCAACCAAGAACAGGC
GAACAAACATATGCCAACCTACATGATTCTTTGATCTCCACATATCGCAA
ATTACGTTTTGTTTACATGGGTGATATTGTTGCTCGAAATCCAGGACATG
AATTCGGATGGCGTCATCATTCAAGAGCCGTTTACATGGGCGAAGAGAAA
ACTGGTGGTTGGTTCGGTGGTTGGTTTGGCGACGAAATGGAAGACCAAGA
TATGAACGCAATTGATGAAGAGTTAGAAGATTTCCTTGACTCAGATGAGG
ATGAAATTCAAGATGAATTCGAGACTACAGAGGACGAAAACGAGGCTGAA
TTCAAAGCACTAGAAGCATTAACATTGAAAAGTGTTGAGGATGAAGAAGT
TCAAGATTCCAACATGAGAAAATTCTGGACAATCTGTTCAACGCAGAGGG
CTTACAAATGCATCACTTACTTAAAGCATTTTATACCCAGTATCAACCAT
CATGCTATtgctaattatgtcaaaagtgCCGAAGAAACACATGTGTTTAG
AACGATGAAAGGAACAGAGAAAAGTAACTTTAATAGAGCTCTCATCGCTG
CTTGCCAAGAATTGGAAGGGTAGATTTTGTCTCGTTTGTAAAATCGTACA
ATATTCGATAAATGAAGTTTTCGTAGCACTATGAATATTATTTTGCACAC
AATTAAAGATAATATGACATGAATTCAATAAAATACTTC
Run BLAST on NCBI

transcript from alignment at sc0000087:535897..540692+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008744 ID=TCONS_00008744|Name=TCONS_00008744|organism=Clytia hemisphaerica|type=transcript|length=4796bp|location=Sequence derived from alignment at sc0000087:535897..540692+ (Clytia hemisphaerica)
CTCTATTCCCGTAGGACGTAATCTTCACGTCTCCCGTGAGGTTTAATTAA
ATCTTAACTGTctaatatctttttattcagttttgtctttaaaaattGGT
ACATGTGCATTAGTTGGTACAGCATTCAGTTGTAGTTAAGACGTTACAAG
CTTGGAGAAGTACAAACTGAAATCATGTTAAGAACAGCCATTTTCTTGAT
CTGTGCTGTGAACGTTGTGGTTGATGCAACAACATGCCCGTAAGTCACTC
ATTTCGTTGGAAGAATCTTGTATTGAAATATCCTTTTTATTATACTTTCC
GAGTTCGAGTGTACAAAGACGTTTTTCTTTTAAccctttcttttgataca
tttttcaCCGGAACGTTTCATACTTAAAAAGCCCAATACTTTGCCTCCCA
ACAAAGTCCATCGGGATGAGGTCAATAGACAGCCTAATTCTCGATTTTCT
AAAAGCTTGGTTCTTTTCGTTATGAAAAGATGACAATTTCAACAGTTAAA
AGATGGTATTGAATTTGGACAGTTCTGGAAAAAGAATGTCCATATGATCA
CTTTATACAAATTTGTCTTATGTAATGACACCCcgtatttcttttttctc
agaACCCTTGGCAACGCCATCACACAAAAAGACATTTTGCATGCAGTCCG
AGCATCCCAAGAAGTTTACAATGACAATGTGGTCGAAGGATCAACTATCA
ACCAAACTCCTTTCACAGTTGTCaagaaaattcatgaaaatttacACACT
GATGCTGGAATAAGAGTTTTAGTGGCTGACCATGGGAACACCAGAATGAT
CATCTATAGAGGAACTGACGGGTAAGTATGACAAGTTCGTTTGCCACCTC
TTCAAGATCTGTTTTTGGTAGAGTTATTTCTATTGATTGACATCCAAATC
ACAATTTAGGTTCAAATTAAGAACCAAATTTGGTCCGATGTgccaaaaaa
aaagacaaactcAACAATTTAATTGCGGAAATGATAATTACTTCTTTTGA
GGTCTGCTGTCATTCTCAATGCATTTCTCCCGATGAATCTTGTCTTAGAT
ATGAACGAAAGTAACAAAATCTTGATTTATTTTagattctttcaaaattt
ttatcaaattctatTCCTATGCCTACCGACGATGAATTTAAACCTCATTT
TTACAGTGGAGCGCAACTTCTCATCGAAGGTGGAAGCGTGTTTCAAAGGA
AAACCGTTGTTCGGTACGGAAATCAAGACGTTAAAATCCTGAAATTCTTC
TGGGAAGCTTTTGAGCTTGTTTCGTACGGTTTAAGACCTTATATCACGGA
TCCATCAAAGAAATATATTATTACTGGTCATTCTCTTGGTGGTGCTATGG
CTTCGATTATGGCTCTCAATGGAACACAATTGTATCAAGTGAGTTTAATA
AAAACGACATTGAAGTACTTTCCAAATTTGTTCTCTGATATATTGTGGAC
TTGAAAAAGGAATTAGacaaaacactttttggcaaatgatatatttttca
gatcCTGGCCTTGATATTCAAGAAGTAAATGTTTTATGAGGTTTAGATCT
Tgtctctactttccaactgcagcttaaggcgcttaaaaatcatttgtggt
gttaaAAATTTCGCCGGGAAGTCCCCTTTGTTTCAAATATattgtccatg
attgtacttCAGGCTAAACTTTGCATTCTGATGTAACCGAGTTTGGTGAA
TTTATATTAATCGCATCTTCCATTCTATATAGCCTAAGTAGCCTTCACAC
CTTTATGTCTTTACTTCTCAGGGATCGATGTGGGCGAATCCTCAATCAAG
TTTGATTACTTTTGGTCAACCAAGAACAGGCGAACAAACATATGCCAACC
TACATGATTCTTTGATCTCCACATATCGCAAATTACGTTTTGTTTACATG
GGTGATATTGTTGCTCGAAATCCAGGACATGAATTCGGATGGCGTCATCA
TTCAAGGTAGGAATACCAAGACTTGATGCAATGATTCTTTATCTTGTTTg
gcgtcaaatatttttcttttgtcaacaacactaacacccctgtctcacag
cctcagtggaacttttttcctcagtggggataaaaattcNAACTCGATGC
AATGATTCTTTATCTTGTTtggtgtcaaatatttttcttttgtcaacaac
acgaacacccctgtctcacagccccagtggaacttttttcctcagtgggg
ataaaattcctattgaaatcctaacggggatagaaattctattgctcaaa
agttaaaaacccagtggggattgttttggagtgcaattttaaacatggaa
tttcgattggggatgaaatcaaagtcgattTTCCAGTGAGACTGAAATTT
AAGGGTATTTTCCCagtggggacgaaatttttacttagtttccagtgggt
ctgtgggTGTGTGACATAGGGGTGTACACTATCACTGATTAAGCTATTGA
ATTGCATTTATCTCTGTCCAAAAGAGCCGTTTACATGGGCGAAGAGAAAA
CTGGTGGTTGGTTCGGTGGTTGGTTTGGCGACGAAATGGAAGACCAAGAT
ATGAACGCAATTGATGAAGAGTTAGAAGATTTCCTTGACTCAGATGAGGA
TGAAATTCAAGATGAATTCGAGACTACAGAGGACGAAAACGAGGCTGAAN
GAAACTGTGTTTAGTATTTTGGGaattacacaatttttttttttataaga
acaaactatataagaacataaggcttcaaggcccaaaaatttaagaacat
tctaagaacatcctaaggctttggagacttaaaaacatgcattttcttaa
gaaattacatcgaaatgctcaaaaaaagctgaaaataagaacattttaag
aacattcttaggcttcaaatccaaaaaactaagaatatccgaaggcttcg
aaaatttttgacgttcttataaaaaaaaaacgtgtagcaaagttctttaa
tgacttaaaaataacaaaggtaatataagttcatgcttatcttttcaata
aaaacaattatactgtgatttgacttcgtttcgaaataatcaatgatacc
aataataccaatgcacaaacacttaacattttccaacttttaattgcact
gttcaaaaaagataacataaccttcgtttttagtaataagttagagattt
gatatttcacagaaaagtgctaccaaggggcgTATTTCGGATCCCAAtac
ttccgaaggacttttctgtttgccttgaaatttaacaaacttcttaacct
aaggttgaaccaccactggtgtaaaaatgaacgttatagcatNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNttgtccatgattgtacttCAGGCTAAACTTT
GCATTCTGGTGTAACCGAGTTTGGTGAATTTATATTAATCGCATCTTCCA
TTCTATATAGCCTAAGTAGCCTTCACACCTTTATGTCTTTACTTCTCAGG
GATCGATGTGGGCGAATCCTCAATCAAGTTTGATTACTTTTGGTCAACCA
AGAACAGGCGAACAAACATATGCCAACCTACATGATTCTTTGATCTCCAC
ATATCGCAAATTACGTTTTGTTTACATGGGTGATATTGTTGCTCGAAATC
CAGGACATGAATTCGGATGGCGTCATCATTCAAGGTAGGAATACCAAGAC
TTGATGCAATGATTCTTTATCTTGTTTggcgtcaaatatttttcttttgt
caacaacactaacacccctgtctcacagcctcagtggaacttttttcctc
agtggggataaaaattcttattgaaatcctaacggggatagaaattctat
tgttcaaaagttaaaaacccagtggggatagttttggagtgcaattttaa
acatggaatttcgattggggatgaaatcaaagtcgattttccagtggggc
tgaaatttaagggtattttcccagcggggacgaaatttttacttagtttc
cagtgggtctgtgggTGTGTGACATAGGGGTGTACACTATCACTGATTAA
GCTATTGAATTACATTTATCTCTGTCCAATAGAGCCGTTTACATGGGCGA
AGAGAAAACTGGTGGTTGGTTCGGTGGTTGGTTTGGCGACGAAATGGAAG
ACCAAGATATGAACGCAATTGATGAAGAGTTAGAAGATTTCCTTGACTCA
GATGAGGATGAAATTCAAGATGAATTCGAGACTACAGAGGACGAAAACGA
GGCTGAATTCAAAGCACTAGAAGCATTAACATTGAAAAGTGTTGAGGATG
AAGAAGTTCAAGATTCCAACATGAGAAAATTCTGGACAATCTGTTCAACG
CAGAGGGCTTACAAATGCATCACTTACTTAAAGCATTTTATACCCAGTAT
CAACCATCATGCTATtgctaattatgtcaaaagtgCCGAAGAAACACATG
TGTTTAGAACGATGAAAGGAACAGAGAAAAGTAACTTTAATAGAGCTCTC
ATCGCTGCTTGCCAAGAATTGGAAGGGTAGATTTTGTCTCGTTTGTAAAA
TCGTACAATATTCGATAAATGAAGTTTTCGTAGCACTATGAATATTATTT
TGCACACAATTAAAGATAATATGACATGAATTCAATAAAATACTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004902XLOC_004902Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008744-exon-sc0000087-1491911889:535897..536135TCONS_00008744-exon-sc0000087-1491911889:535897..536135Clytia hemisphaericaexon
TCONS_00008744-exon-sc0000087-1510915933:535897..536135TCONS_00008744-exon-sc0000087-1510915933:535897..536135Clytia hemisphaericaexon
TCONS_00008744-exon-sc0000087-1575043694:535897..536135TCONS_00008744-exon-sc0000087-1575043694:535897..536135Clytia hemisphaericaexon
TCONS_00008744-exon-sc0000087-1491911889:536499..536717TCONS_00008744-exon-sc0000087-1491911889:536499..536717Clytia hemisphaericaexon
TCONS_00008744-exon-sc0000087-1510915933:536499..536717TCONS_00008744-exon-sc0000087-1510915933:536499..536717Clytia hemisphaericaexon
TCONS_00008744-exon-sc0000087-1575043694:536499..536717TCONS_00008744-exon-sc0000087-1575043694:536499..536717Clytia hemisphaericaexon
TCONS_00008744-exon-sc0000087-1491911889:537053..537284TCONS_00008744-exon-sc0000087-1491911889:537053..537284Clytia hemisphaericaexon
TCONS_00008744-exon-sc0000087-1510915933:537053..537284TCONS_00008744-exon-sc0000087-1510915933:537053..537284Clytia hemisphaericaexon
TCONS_00008744-exon-sc0000087-1575043694:537053..537284TCONS_00008744-exon-sc0000087-1575043694:537053..537284Clytia hemisphaericaexon
TCONS_00008744-exon-sc0000087-1491911889:537668..537852TCONS_00008744-exon-sc0000087-1491911889:537668..537852Clytia hemisphaericaexon
TCONS_00008744-exon-sc0000087-1510915933:537668..537852TCONS_00008744-exon-sc0000087-1510915933:537668..537852Clytia hemisphaericaexon
TCONS_00008744-exon-sc0000087-1575043694:537668..537852TCONS_00008744-exon-sc0000087-1575043694:537668..537852Clytia hemisphaericaexon
TCONS_00008744-exon-sc0000087-1491911889:540129..540692TCONS_00008744-exon-sc0000087-1491911889:540129..540692Clytia hemisphaericaexon
TCONS_00008744-exon-sc0000087-1510915933:540129..540692TCONS_00008744-exon-sc0000087-1510915933:540129..540692Clytia hemisphaericaexon
TCONS_00008744-exon-sc0000087-1575043694:540129..540692TCONS_00008744-exon-sc0000087-1575043694:540129..540692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:535897..540692 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
697.017	682.238	394.278	314.715	9.16624	5.26927	0.638432	1.8729e-05	3.25543	8.46096	17.2406	1.94737	1.12525	1.43256	0.8945	0.964508	3.1553	4.25133	2.26404	3.63632	10.3335	11.5707	213.934	171.324	5.12859	6.78093	6.6413	7.33632	110.224	123.497
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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