|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008730 ID=TCONS_00008730|Name=TCONS_00008730|organism=Clytia hemisphaerica|type=transcript|length=4693bpRun BLAST on NCBI transcript from alignment at sc0000087:397766..410210+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008730 ID=TCONS_00008730|Name=TCONS_00008730|organism=Clytia hemisphaerica|type=transcript|length=12445bp|location=Sequence derived from alignment at sc0000087:397766..410210+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008730 vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3) HSP 1 Score: 172.17 bits (435), Expect = 1.612e-71 Identity = 137/486 (28.19%), Postives = 235/486 (48.35%), Query Frame = 2
Query: 323 DDTIDL-----TIFEAAREGCLEKIITQIEYLKREDDIKRLLEQRNQCEETPLHVAAKYNQENIIRYLVNHNVW--IDVPDQQKNTPLHTAIKNDSKIATKTLVEMGANVHLKNDYGLYPIHFAASRGNKDLCRILVSYKEVDVNVTDHGLCTPLHIAVGSQQAGTVQLLLSHKANPYVQDLEGRYPLHIAASDGSDAIIEILVKAMKRFTVTGPHANVDVQNNEQKTPLHMACLHGHVKSVTKLLEHQADVNCQCSSKITPMHLAAIYGRDDVIKILVKYGSK----LNKRDTFHMTPLHRACLYGRINVISLLYTLGAHLELRNETGFTPLLCAVWSGSIDVVRYLLNCGVNFEAIDNTERNVLHIAAQKKQ--HKLLEVLLQHKGILGLINNTDQNNWTPLHYATYFMSVKCQRILLDHQSTVTARNKRRKTPIHFASCLGKPAAVHMLCEVSRDC--IDQTDDSLKTPLMLAAIN--DKSVR 1729
DDT D +FE + G L+ Q + LKR DD+ LH AA Q ++ + + + D NTPLH A++ + + K L+ GAN +L+N + P+H A N ++ ++L+ ++ +DVN+ T + IA + + +Q+LL A P + G +P+H AA GS +EI+++ + + +++ NN + TPLH+A +G ++ + L++ A ++ + T +H AA G +++K+++ S +N D H T LHRA L+ + L ++GA + + G +PL+ A S S ++V LL+ G + DN RN LH+ Q+ L +Q + I L+ + D + TPLHYA LL ++ +++K +K+P+HFA+ G+ L + D +++ D TPL LAA N DK V+
Sbjct: 27 DDTEDFKESLKVVFEGSAYG-LQNFNKQ-KKLKRCDDMDTFF----------LHYAAAEGQIELMEKITRDSSLEVLHEMDDYGNTPLHCAVEKNQIESVKFLLSRGANPNLRNFNMMAPLHIAVQGMNNEVMKVLLEHRTIDVNLEGENGNTAVIIACTTNNSEALQILLKKGAKPCKSNKWGCFPIHQAAFSGSKECMEIILRFGEEHGYS-RQLHINFMNNGKATPLHLAVQNGDLEMIKMCLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVGADINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYGLKNLRPEFMQMQQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQ 499 HSP 2 Score: 118.627 bits (296), Expect = 1.612e-71 Identity = 111/420 (26.43%), Postives = 204/420 (48.57%), Query Frame = 1
Query: 1717 QICEVLISYGADVEKTDDLKMTVLHYACQNGYPEIVKMLLESSAN-VDATNLNFETPLHLAAKNGKTDCMEALIDSGAQVVIKDKSGKNCLDKAIENYKKNACIYLLRDKHWKQLMQNVDFN--GNR-PMDKMIERMPAVAEIVLDNCIETSNLEKEHIDYSITYYF-------DFVALTPEPGSKSNKVCGPSIMAKNNRETLLAHPVTICFINSQWKLLPRYMXXXXXXXXXXXXXXXXXMIVKEKDWIYRSPENSTSNITNTSFPDYQDAVFVNPTCEATSMMVXXXXXXXXXXXQLF---KEFIQFIMSPFDYIMDLVNYIEIGLYVTSLIFVTTYFMDEHYRCLQMEHYDNEALRVNAGAVAIMLAFCNMLFYMKRAPFVGLIVLMFIEVLKTVISVLLIFGFIIVGFALSFHFI 2934
++ ++L+ GA + +D T LH+A GY + +K++L+++ D + + T LH AA+ G + L+ A +V+ +K + L A+ N +K + ++R K W + ++ N GN+ P+ +MIE +P +++LD C+ S +K DY I Y F +F TP + + M +NNR LL HPV ++ +W + ++L +Y + L +T ++V K + NST I TS D+ + + + T+ +I +I+ + +F KE Q +Y MD+ N +E +Y T +IFV F++ L+ GA+A+ + N L Y++R G+ ++M +LKT++ ++F F+++ F LSF+ +
Sbjct: 496 KVVQLLLKKGA-LFLSDHNGWTALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADIVL-NKQQASFLHLALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGNKCPITEMIEYLPECMKVLLDFCMLHSTEDKSCRDYYIEYNFKYLQCPLEFTKKTPTQDVIYEPLTALNAMVQNNRIELLNHPVCKEYLLMKWLAYGFRAHMMNLGSYCLGLIPMTILVVNIKPGM---AFNSTGIINETS--DHSEIL------DTTNSYLIKTCMILVFLSSIFGYCKEAGQIFQQKRNYFMDISNVLEWIIYTTGIIFVLPLFVE-----------IPAHLQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFIFLLLAFGLSFYIL 891 HSP 3 Score: 106.301 bits (264), Expect = 7.365e-23 Identity = 107/371 (28.84%), Postives = 164/371 (44.20%), Query Frame = 2
Query: 461 PLHVAA----KYNQENIIRYLVNHN----VWIDVPDQQKNTPLHTAIKNDSKIATKTLVEMGANVHLKNDYGLYPIHFAASRGNKDLCRILVSY--KEVD-VNVTDHGLCTPLHIAVGSQQAGTVQLLLSHKANPYVQDLEGRYPLHIAASDGSDAIIEILV-------------KAMKRFTVTGPHANVDV----------------QNNEQKTPLHMACLHGHVKSVTKLLEHQADVNCQCSSKITPMHLAAIYGRDDVIKILVKYGSK---LNKRDTFHMTPLHRACLYGRINVISLLYTLGAHLELRNETGFTPLLCAVWSGSIDVVRYLLNCGVN-FEAIDNTERNVLHIAAQKKQHKLLEVLLQH 1441
P+H AA K E I+R+ H + I+ + K TPLH A++N K ++ GA + IHFAA++G ++ ++++S VD VN TD T LH A L+S A+ D EGR PL +A + S I+ +L+ + TV P+ ++ ++N+ TPLH AC G SV LL ++ + K +P+H AA YGR + + L++ S LN+ D MTPLH A G V+ LL GA L L + G+T L A G ++ +L+ + + +D LH AA++ K + +LL H
Sbjct: 201 PIHQAAFSGSKECMEIILRFGEEHGYSRQLHINFMNNGKATPLHLAVQNGDLEMIKMCLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVGADINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYGLKNLRPEFMQMQQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGA-LFLSDHNGWTALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSH 570 The following BLAST results are available for this feature:
BLAST of TCONS_00008730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.