TCONS_00008725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008725
Unique NameTCONS_00008725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3231

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008725 ID=TCONS_00008725|Name=TCONS_00008725|organism=Clytia hemisphaerica|type=transcript|length=3231bp
NAAAAACGCCCTTGGTTTAACACCCCTTGAAATTGCAGCTAGTAATGGTC
AAACTGACGCAGCTAAAGCTTTGATTTGGGGAGGTGCAGCATCGGGGAGT
CGGTGCGAATCAACGGGTTTGAATGCGTTGCATTACGCCAGTATTGGTGG
CCATAGTGACATGATTGAATATCTATTGGAGTATTGTGATATCGAAGAAA
CTGACTTGACAGGACGGAACGCACTTGATCACGCTATTGATAATCTGAAT
AAAGACGCTGTCTACTCCATATTGAGTCATCGTGATTGGAAGTTAGCATT
ACGTAATAAAACCATTGATGAAGACAAAAAGTTGACCACGCCCTTGCGAA
AATTGATCAAACGAATGCCAGATGTTGCTCAATTTGTGTTTGACCGTTGC
ATCAGTTCACCTGAAGACCTACCCGTGGATAATCCAGATTATGAATTAGT
ATTGAATTATGAGTTCATTGATGATGTGTACAACGATTGGCCATGTGACA
TCGTGCGCTATGAAGCGGAGGAGGGCCAAAAGAAAGGAGATGTCTTTACC
AGGAAGAAAATCCAACGCATCATGGAACAGAAAGAAACACACACTTTCAG
TTATATGGTGGCATACGACAGAGAGGACTTAGTTTCTCATCCCCTTATCC
AAGCATCGCTcaacaaaaaatggcaaaaattcgctGCATATTTATATTAC
TTCAAACTGCTGCTTTATGTTTGCTTTCTGACGTCATTGACGGGTTACAT
TTTGGTGACGGCACCTTTGAGAGAACCATATCGATCTAAAGATTGTACGA
TCGTCCAAGAGAATGCCACATGGGAGATGATTGTGTTCGTGCACTATGGC
AAATTTGCCGTCATCATTCTTGCATTGCTACATTTAATATTTGAGATTGT
CCAAATGATTGGCCAACTTGGTGATTACCTTCAACTGGACAATTTACTGG
AGTGGATCATTTACATTCTGGCAATCGCTAACGTCATTGATGATTTTATT
GTCCTGCCTTTCTTACGCAACGGATTAATTTGTGGCATGTACCAGAAAAG
TTTTGGATCATTGGCTTTATTTTTGTCATGGTTGAATTTTGTATTATTCA
TGCGTAAAGTTCCAGTGTTTGGCATCTATATCGTCATGTTCCTTTATGTc
tttaaaacattcttcaaattCTTCgttgtcttcattttcttcatcgccac
tttcgctttcgcttTCTTCATATTACTGAGAGACGGACAGtcaCCGGCGT
TTAAGAATCCGTGGACGTCACTGGTGAAAGTCGGCGTCATGATGACGGGA
GAGATGGGTTTTGATGAATTGTTCTTTTACGGCGGTGGAAAAGTCGATCC
TATCTTAtggatcattttcatcatttttgtgTTGGTTCTCAACATAATCC
TCATGAACTTACTGGTCGGTTTGGCAGTCGACGATATTGCAGGAGTTCAA
AAACAAGCGGAGATGACCAAATCGACCATGCAGATTGACATTTGCTTACA
AGCAGAAATCACGTTACCAAAAATGTTTCGCACTCGCTTCGTCGTCAAAT
CACAAAAACTTCGCCCCAACAAAGATGATCTTCCAAATAATATCTCCATG
AAAAGTTATATTAAGATTAAAGAAATTCTTCTCAAATCAAAGGAAGCAGA
AAATAGTGTGCAAGACAGTTTGAAAGCCTTACAACACGACATGACACAAC
TCACAGATCGCGTCAGTAAGATTAACGACGAACTGACCGACATTGAGCTA
CTGAACGGGAAATTATCCGATCTGAAAGCCATGATGAAGGATATTTGGAA
ACATCAACGACGAAAAGCCAAGAAACAAAAAGCAGAGATTTCTCCAAAAG
AAGGAGGTCaacaagaaattaaaagagaTGAGACAAAAACTGAAGATGAC
ACTTTTGATGATACAACGCATGCGCAAGATGATACAACGCATGGTGCACA
GACTTTAGACGAGGAGGCTGTTGGTGTTGGTGATGAGGGTCCTGGGGAAG
AGTAATAACTATGTTTTCCCATTGTTGACGGCTGATGTGTTTTTACCATA
GGGCGCTTAGAGAGGAGAACGCCCATAGCCAACAGCTGATGAGTTTTGAC
CATAGGGAGCTTAGATATGAGAACGCCCAAAGCTTACGGCTGACGAGTTT
TGACCATAAGGCTCCTTGAGAGGAGAACGATGGTTTGAAAGAGAGATCCA
CTTTTACTTTGATATCTGTATTATCATAAAAATTTAGAAGTAAATGAAAA
TGCGAGTTGATATCCTATCTGTATCAATTGGGTGCTTATGGATTTAACTC
AAAGAAACGGGAAGTCATTTCAAAAGAGTGATAAACAATATCTATATATT
TTCATTGCATCACATGGCCATGGGGAAACTTCTTTGAATCTTCAAGTCGA
CATATGGAGATTTCAATATTGCTATTAGAATATTGAAGTATAATTCACCA
TATTAGTACATGAtacaaaaatagattttatcaACTTATATAGCGACCAC
CTTCAGTGGTCTTTCATATGCACACAGTCAGCATTTTACAATTTGTGGCA
AATTTCAACGTTACACCTTTTGGCAAACGCCCGGTATTGTTTTGGGTTCT
TTTGTAATTTCGATAAATGATTCATGGCGTAATgctgttttctacggaaa
taccccggttttttGGTAGTAGGGGTCACTTaaggtaaagaaaaaaaaaa
ccgggGTGTTTCCGTAGAAAAAAATTAGGTAATGAATACCGTGAATAAAA
GGGTATAATCCCAAAGTTTAAGTCCGCTCCAGCCCTCTTTTTCGGGATGT
AtggattttcaatattttgcgtGACCTGGATGTGTGGTGAACATTTTCTT
TCcatcttgagaaaaaaatatctatGTTACCATATGGTGGACAAAATGGT
GGATCAAGTAATGAACGAAACTTGAATATCTATGAATATCTATCGAGAGA
CATAATTTTCGTCATTTCCAAACCACAATAAACTTAATACAACTTGCATA
TTAAATACAAAGTGCGCAAAAATAATACAAAGTATTTTTTCTAGAAGATA
CAAtcaaattattatattttattgagATCCTTGTCTCTattattttctct
attttttgcTTTGAGGTTGGGGGAAAATGGAGAAATTATTACGAAATGAA
AGAATAAGGCTCTGTGAGAATCGggaaaaatgaagaattaaTCAAAATAA
TATACTGTTATTTTGTAGTATAGTAGTGGGC
Run BLAST on NCBI

transcript from alignment at sc0000087:384832..395640+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008725 ID=TCONS_00008725|Name=TCONS_00008725|organism=Clytia hemisphaerica|type=transcript|length=10809bp|location=Sequence derived from alignment at sc0000087:384832..395640+ (Clytia hemisphaerica)
NAAAAACGCCCTTGGTTTAACACCCCTTGAAATTGCAGCTAGTAATGGTC
AAACTGACGCAGCTAAAGCTTTGATTTGGGGAGGTATATTTTTGTGTGTG
TTTAAAACCGTTGGCTGACAGTTACAAGATTGTTGTATTAATCCGAATTA
ATGCTCATAGTGGGAAATTCAGTGGTATTTTTGgaagctttttttttaat
ttgtggTGAAATTTCTTCTAAGAGACATTACACTAAAATCACTCCTCTGC
TTGATGGGTaaatgtttgacatttttttatccTCCGTTATTGGCCTTCTT
AAACACGAAAGATCTCGACTAAGAACCCCTCTGaagttttctttataaaa
agtagacttaacttgtttttttgccttaaaagcTGGTGCCCCCGGGATTT
TTCCAATTATGACAATCCGTCGTTGTTTTTTCtcgtttttcaagttcaaa
taCAGCCGTTTGAGCCCTGGGATTCGGTTCCGATAAAAAGCACAGACGAG
AAAAATGCTTAACTCTAGTATCAAAAATTAGTAAATTACTGGTTCTTTGT
GTTATTACCTGGGTTCACGAATCATCTTTACTTGACTTTTTAACAGGTGC
AGCATCGGGGAGTCGGTGCGAATCAACGGGTTTGAATGCGTTGCATTACG
CCAGTATTGGTGGCCATAGTGACATGATTGAATATCTATTGGAGTATTGT
GATATCGAAGAAACTGACTTGACAGGACGGAACGCACTTGATCACGCTAT
TGATAATCTGAATAAGTAAGCTACACACTTTTGCTTCACAAAACTAATGT
CTCACTTTGGTTAACGTTTTTTTAAGGAGTCAGCCAAAATTTAGTGTTAG
ATGTTCTGTTAAAGTTAACCTTTTTTTGACGTAACGAGTTACAAAtaata
tcataaataaaaagtTTAAGCAAACGATaagcattaaaaaaaatttgact
acTTTgctatcaaaaattttcaaagcaaCCGTTGAGATATTCTTATGATC
TAAGcatttttcataacagttatttgataagctctctaattcgattttca
tagAGAATTGGATTTTCCATCGAATAAGGTAGCGTATAGCAAGGCGTCAT
TTATATGGGAATATCTTATGTTTACggtggctttcaatattatcaaataa
agGAGCCTTTCGAATAgtcgaaaatcgaattagagagtgtcaactgtatt
tttatattttctttacgAACAGAGACGCTGTCTACTCCATATTGAGTCAT
CGTGATTGGAAGTTAGCATTACGTAATAAAACCATTGATGAAGACAAAAA
GTTGACCACGCCCTTGCGAAAATTGATCAAACGAATGCCAGGTGAGCTGT
TGGTCGCTTACAACCTTGTCCTCGTGTATTCCCgactttatttacgttac
tgatagacGCCAGAGAAAAAAactattatctagcgctatcaatAGGCATA
AAGAAGCcaataatacgcagggaacgaggttacCTCGATGATGAGAAAAA
TTGCCGAGTGccgaaaaacaaaagaatgttgAGTAAATGTTTGTCAGCTG
AAAAGATGATGCATATGTAATAAACTTCAGATCGGCCTTGATTTCATTTA
GTTATAGCTATTCTTCAATACTTTGTGAAGTATGTTTTGGCCTCAAATAT
TGGCTAGCCTCTTAAGAGCATAATTTTAGGGTAAAATTGTTCCCACCTAT
ACAATCATATCTTATATTTATAACGGCTGCCTCCAACCATAGTTGTAGGG
TGAAATGGTGGTAACAAAGATTCTCACCGATTCTCGCCAGCTTCAAATCT
CTCACCGACGGATCGAAGGAGCCCATCTTTGGGTTCAATTCTACCAAAGC
AATGACATTCAAACAAATTGGGTGGAGGTGGGCATTTGACATTTGACATT
TGATGGAAAATCATTAATTTAACTCAATTCAAAACATTCCCCTTTAGATG
TTGCTCAATTTGTGTTTGACCGTTGCATCAGTTCACCTGAAGACCTACCC
GTGGATAATCCAGATTATGAATTAGTATTGAATTATGAGTTCATTGATGA
TGTGTACAACGATTGGCCATGTGACATCGTGCGCTATGAAGCGGAGGAGG
GCCAAAAGAAAGGAGATGTCTTTACCAGGAAGAAAATCCAACGCATCATG
GAACAGAAAGAAACACACACTTTCAGTTATATGGTAAATAAGTTAGTTTG
CGATCGCAGTCGAGGGCAACCCAAAATCCCGCTTTTCTTTTTAGCTGTCG
AACCGAAGGTAGGAGAGGGTGCCACCTCCTTTCCtcggatttctccactt
accatCGTCCAAACTTTAGTTTATGAGCATCAAGCAGTATGGCATCCAAT
TACCATTCTCGAATCTtaggtatgacccggctgggctTGGAACCTTCAAT
CTTGCGCACGGTAGCCGTATGCTTTACCTTCATGCTACCGCCGACCGTTA
AATTAGCTTGGGTATTCTATATCAAAACTGTAGAAAAGAATGAAATTACA
TACGATAAAAAGTTCGAAAAAGTTTAAAGGAAAAAGGTCATAAGAGCAGT
GTTAGTGTTAGTGTTATTTTACTGGTGATTGTTTTCCCACCTATTCTCCA
CCTCATATGCCTTTTCACAGAGTTTCTAGCTCGACAAGGTCTTCTTATCT
GCTGATTTTGCCAAGCTCGTTCCCTTGGCTGTAGTAGATAGGGACATtgg
gaatctcgttaatccattcatgcgcgtcactCATTAGATGACGAGGCATT
TGGCTACATTAAAGGAGTCATATGTTATGAAATGAGATAACTCAGGTAAC
GCacttaatatttatttttatccaCAGGTGGCATACGACAGAGAGGACTT
AGTTTCTCATCCCCTTATCCAAGCATCGCTcaacaaaaaatggcaaaaat
tcgctGCATATTTATATTACTTCAAACTGCTGCTTTATGTTTGCTTTCTG
ACGTCATTGACGGGTTACATTTTGGTGACGGCACCTTTGAGAGAACCATA
TCGATCTAAAGATTGTACGATCGTCCAAGAGAATGCCACATGGGAGATGA
TTGTGTTCGTGCACTATGGCAAATTTGCCGTCATCATTCTTGCATTGCTA
CATTTAATATTTGAGGTAGGGTTTTTCAAAGAAATCATCTCCGAACTATG
GCCATAAAAAGATACTTTGCTCATAATCTACGCGCGAATAAAAAGCACAC
TAAAATCCTACTTCAAATATCTTCCGCTCTCGACTTCTAGGGTTTAATGG
TGGAAGTCACTTAAGAACGAGCTATATAATTGGCCATTTATAATCGATAC
AAATGCAGTGTTGTGCTTTTAACTTCTTCATTATAATGTAAATTCTCGCC
TGGAATTAGCtcaaatataaatgaaattctGATCTCAATTTTCAGATTGT
CCAAATGATTGGCCAACTTGGTGATTACCTTCAACTGGACAATTTACTGG
AGTGGATCATTTACATTCTGGCAATCGCTAACGTCATTGATGATTTTATT
GTCCTGCCTTTCTTACGCAACGGATTAATGTGAGGTTTTTTCGGGATTTT
TATTCTGTGACCAAATCCAATCGACTTTTCAAGACCCCTCAAAAATTTTA
GCCATATTTCAACAATATCTAGGCATAAATTAAAATTGTAATTACaatta
caattaaaaaaagttataataAGAGATGATTAACATTCTGATGCTATTCA
GAGTTTCATGGCGCTGCTTTCACGCCAATCTTCAGTTAACATTCTGATGT
TATTCAGAGTTTGATGGCGCTGCTTCCACGCCCCTTCCACGCCAATCTTC
AGTTAACATTCTGATGTTATTCAGAGTTTGATGGCGCTGCTTCCACGCCC
CTTCCACGCCAATCTTCAGTTAACATTCTGATGTTATTCAGAGTTTGATG
GCGCTGCTTCCACGCCCCTTCCACGCCAATCTTCAGTTAACATTCTGATG
TTATTCAGAGTTTGATGGCGCTGCTTCCACGCCCCTTCCACGCCAATCTT
CAGTTAACATTCTGATGTTATTCAGAGTTTCATGGCGCTGCTTCCACGCC
AATCTTCAGTTAACATTCTGATGTTATTCAGAGTTTGATGGCGCTGCTTC
CACGCCCCTTCCACGCCAATCTTCCACGCCAATCTTCAGTTAAATGAGAT
ATCCTAATgagtaaaagttgaaaattcttTCTAAAGTTAGTCAAAGGAAA
GAAACGATTTAATTTTTTCCGACTCTGATTCGACGTTCtcattattcgat
aataatGCAAGTCGCCGTCAATAAGCGAACCTCTCATAAACAATGCTCTA
CTATACTCTATTATTCGAACCCTctcttatttgatgaaaatctaattccc
tttgaaaatcaaaatagagagtagcctagttaactaagcccgtattcaca
aggaaTTTTTGGTGCTTTAAAGATTTCTATATTTACGGATTTCAAGNaag
cccgtattcacaaggaaTTTTTGGTGCTTTAAAGATTTCTATATTTACGG
ATTTCAAGTctgccttggaatactgttattcagtcagtcacaacttacca
tcagatttattctagtgactgaatcaaactagcttagatttctaggctaa
atAGAGAGCTTCTACTGTATATGCAAAAAGACAAAACTtcttcaatcttc
ttttcattCTGTTTCAGTTGTGGCATGTACCAGAAAAGTTTTGGATCATT
GGCTTTATTTTTGTCATGGTTGAATTTTGTATTATTCATGCGTAAAGTTC
CAGTGTTTGGCATCTATATCGTCATGTTCCTTTATGTctttaaaacattc
ttcaaattCTTCgttgtcttcattttcttcatcgccactttcgctttcgc
ttTCTTCATATTACTGAGAGACGGACAGGTAGGAGTATTAGGTTTTACTA
AACTGAGCTTTAGCTGTTATTTCAACATGCATGGAGTATTTAAAGCTCGG
TTGCtcttatttttgagttttttataCTTcgattttatcatattttgaga
CATCAAATAAGTATTATATtatctttttctgaaaactGACTCGCTGTCTT
CATATTATTGAGGGACGGACAGGTAGGAGTATCGGGTTTTCCCCACTGAG
CTTTGTATGAACCCTGGGGCAGGAGTTTCTTTCTCCTGGCCGACCAAAAC
CTCTGATCGGAGGTTTTTTGAAATTAGTATCCTAATGGTAACAATACTCA
ATAGTGGTGTAATGCATCTACTTTTTCTTGAACACatatgatgtagcgcc
gtttgacgTTAGGTAAAAATgtaatggcttctttgcgggtaccattTTGA
CCCATATCGAGTAGTGCTACAATTAGGTagcacatttaaaaaaaactctg
ataaaagatggcggaaaaaaatAAACTCAGCTACTTTTTCAACATGCATG
CGGTGATTTTTTTCCAGTGAATAGCccatttaatatatttttttctaaat
tcctACATTTGGAACCCCTTAATCCCGAAAAATGGATTGACTTCAACtat
cataaaaagttgtttcgatatattttttatttttttgttttcagtcaCCG
GCGTTTAAGAATCCGTGGACGTCACTGGTGAAAGTCGGCGTCATGATGAC
GGGAGAGATGGGTTTTGATGAATTGTTCTTTTACGGCGGTGGAAAAGTCG
ATCCTATCTTAtggatcattttcatcatttttgtgTTGGTTCTCAACATA
ATCCTCATGAACTTACTGGTAAGTAGTATGGTTACCCTAGTAACGGGGTT
GCTAAGTCACCAGAGCccggggggggggcactcaaggtaaatgacctacc
agacgttcggcccttaagggtaggtttttcatagttcagctagtgcactg
taagggtaggaaatttNNNNNNNNNNNNNNactgaactgcactgtaaggg
taggaaattttggtaaaaggccaattttttggtaaaattatcacaaaatt
ggtcaattttggaggaaaaattccacattttgaaaaacattttgagaaat
tttgaaaaagtgcactgtaagggtatgatttttcatggaaattcactgca
ctgtaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGGGGtgaattat
ttttccatttcaccccggctacgtgtaaccaccGCCTAACGGAAGCACCC
GGATAAAGCCGGATGCTGAAGCTAAAACAGATACGAGTACGCGATTCACT
GTACTATACTTAATCTTACAGCAGCACGCTACTGTCTGTAAATTTGTAGT
ATCCTTTTCCTGCAGGGAATTGGATTGGTACGGTATTTTTTTTTGGATGG
CTAGGAGGCTATAAAAGATTTAATACCTAAAAAATCCACTAAGAGATTTC
AATTACAATAGAAAAACCTGAgtttttattgatttgatgTACTCAAGAAA
TAATTTACCTAAAAATATGCCTACAACATATTATTTTGGGAAAAATGTTT
ATTCTCGTAGGTCGGTTTGGCAGTCGACGATATTGCAGGAGTTCAAAAAC
AAGCGGAGATGACCAAATCGACCATGCAGGTGTGTACGGACTGTCAATTC
TGTTTGGATTGTTTATTCTGTTTACTTTCACTCATTCTTTTGTCTTAACC
ATTCCCTTACATCGTATTCAAATGTAACATCAGTCTTTTACAGCTGATGA
TTGTAATAAAATTAAATATGTAGTTCTGTAAAGCAATATGGTGAAAATTG
TGGCCTAAAGTGCAAACAGTCGACATTTCCCTTGATTCATTTGTGACCAT
GGAATAGGTTATCGGTATCAATATTGCCTTTCCATTTTTAGATTGACATT
TGCTTACAAGCAGAAATCACGTTACCAAAAATGTTTCGCACTCGCTTCGT
CGTCAAATCACAAAAACTTCGCCCCAACAAAGATGATCTTCCAAATAATA
TCTCCATGAAAAGTTATATTAAGATTAAAGAAATTCTTCTCAAATCAAAG
GTAGAGAATGACTTCTGTTTAGCAAACATGTATCAAAGATTTCGTAAGCC
TCAAATAGTCTGACAGTCGCATAATTTCTGAATATTTTAACCCcgagcat
ttttcgatttttgtatccccaggATAGTGGGGGGTACCATCCTCGAATAT
TGTTTTTTTGACCTACCTAAGGAGGTCTTGCCAATTAAtactcgttcgtt
cgttcgttcgtttgttaccagctttcctcgtgattggctcagtcaatttt
ctttattttttttcacaaaggcGTGTGTAACCAACATATAAACCCTCAAT
ATGACAGCATGTGacgaatttcaaaatataatctTTTTGGGGTGAATTAC
AGACAAAACCGCTAAATAAAGAACTGAATTGCACTCTTTCTATGCATACG
CCGATGTTCTTAACCAAATAATCCCATTTTTGGCAAGATACAAGGCTGTT
TTGTACACGAAATCGTAATTTTGAACATTATTTAGACATAAAATTCAGAA
GCTTGACATGCATTTTTTACTAGAGAGTAAGAGCACTCTGTCATAACAAT
CATTCCATATCATTCCAATATCTAATAAGCCTTACTTTTACATTTCTAGG
AAGCAGAAAATAGTGTACAAGACAGTTTGAAGGCCTTGNTTGTTTTCACT
CGTTCCAGCCCCCTACATCATATTCAAATGTAACATGAGTCTTACACATC
AGCCTTTTATAGCTGGTCATTGTAATAACATGAAACTTGAAGTTCTGTAA
AgcaaattgtgtattttttttctgaaaattgtggcACTAAAGTGCAAACA
GTCGGCATTTCCCTTGATTCATCTGTGACCATGAAATGTCAATATTGCCT
TTCCATTTTTAGATTGACATTTGCTTACAAGCAGAAATCACGTTACCAAA
AATGTTTCGCACTCGCTTCGTCGTCAAATCACAAAAACTTCGCCCCAACA
AAGATGATCTTCCAAATAATATCTCCATGAAAAGTTATATTAAGATTAAA
GAAATTCTTCTCAAATCAAAGGTAGAGAATGACTTCTGTTTAGCAAACAT
GTATCAAAGATTTCGTAAGCCTCAAATAGTCTGACAGTCGCATAATTTCT
GAATATTTTAACCCcgagcatttttcgatttttgtatccccaggATAGTG
GGGGGTACCATCCTCGAATATTGTTTTTTTGACCTACCTAAGGAGGTCTT
GCCAATTAAtactcgttcgttcgttcgttcgtttgttaccagctttcctc
gtgattggctcagtcaattttctttattttttttcacaaaggcGTGTGTA
ACCAACATATAAACCCTCAATATGACAGCATGTGacgaatttcaaaatat
aatctTTTTGGGGTGAATTACAGACAAAACCGCTAAATAAAGAACTGAAT
TGCACTCTTTCTATGCATACGCCGATGTTCTTAACCAAATAATCCCATTT
TTGGCAAGATACATGGCTGTTTTGTACACGAAATCGTAATTTTGAACATT
ATTTAGACATAAAATTCAGAAGCTTGACATGCATTTTTTACTAGAGAGTA
AGAGCACTTTGTCATAACAATCATTCCATATCATTCCAATATCTAATAAG
CCTTATTTTTACATTTCTAGGAAGCAGAAAATAGTGTGCAAGACAGTTTG
AAAGCCTTACAACACGACATGACACAACTCACAGATCGCGTCAGTAAGAT
TAACGACGAACTGACCGACATTGAGCTACTGAACGGGAAATTATCCGATC
TGAAAGCCATGATGAAGGATATTTGGAAACATCAACGACGAAAAGCCAAG
AAACAAAAAGCAGAGATTTCTCCAAAAGAAGGAGGTCaacaagaaattaa
aagagaTGAGACAAAAACTGAAGATGACACTTTTGATGATACAACGCATG
CGCAAGATGATACAACGCATGGTGCACAGACTTTAGACGAGGAGGCTGTT
GGTGTTGGTGATGAGGGTCCTGGGGAAGAGTAATAACTATGTTTTCCCAT
TGTTGACGGCTGATGTGTTTTTACCATAGGGCGCTTAGAGAGGAGAACGC
CCATAGCCAACAGCTGATGAGTTTTGACCATAGGGAGCTTAGATATGAGA
ACGCCCAAAGCTTACGGCTGACGAGTTTTGACCATAAGGCTCCTTGAGAG
GAGAACGATGGTTTGAAAGAGAGATCCACTTTTACTTTGATATCTGTATT
ATCATAAAAATTTAGAAGTAAATGAAAATGCGAGTTGATATCCTATCTGT
ATCAATTGGGTGCTTATGGATTTAACTCAAAGAAACGGGAAGTCATTTCA
AAAGAGTGATAAACAATATCTATATATTTTCATTGCATCACATGGCCATG
GGGAAACTTCTTTGAATCTTCAAGTCGACATATGGAGATTTCAATATTGC
TATTAGAATATTGAAGTATAATTCACCATATTAGTACATGAtacaaaaat
agattttatcaACTTATATAGCGACCACCTTCAGTGGTCTTTCATATGCA
CACAGTCAGCATTTTACAATTTGTGGCAAATTTCAACGTTACACCTTTTG
GCAAACGCCCGGTATTGTTTTGGGTTCTTTTGTAATTTCGATAAATGATT
CATGGCGTAATgctgttttctacggaaataccccggttttttGGTAGTAG
GGGTCACTTaaggtaaagaaaaaaaaaaccgggGTGTTTCCGTAGAAAAA
AATTAGGTAATGAATACCGTGAATAAAAGGGTATAATCCCAAAGTTTAAG
TCCGCTCCAGCCCTCTTTTTCGGGATGTAtggattttcaatattttgcgt
GACCTGGATGTGTGGTGAACATTTTCTTTCcatcttgagaaaaaaatatc
tatGTTACCATATGGTGGACAAAATGGTGGATCAAGTAATGAACGAAACT
TGAATATCTATGAATATCTATCGAGAGACATAATTTTCGTCATTTCCAAA
CCACAATAAACTTAATACAACTTGCATATTAAATACAAAGTGCGCAAAAA
TAATACAAAGTATTTTTTCTAGAAGATACAAtcaaattattatattttat
tgagATCCTTGTCTCTattattttctctattttttgcTTTGAGGTTGGGG
GAAAATGGAGAAATTATTACGAAATGAAAGAATAAGGCTCTGTGAGAATC
GggaaaaatgaagaattaaTCAAAATAATATACTGTTATTTTGTAGTATA
GTAGTGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004898XLOC_004898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008725-exon-sc0000087-1491911889:384832..384914TCONS_00008725-exon-sc0000087-1491911889:384832..384914Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1510915933:384832..384914TCONS_00008725-exon-sc0000087-1510915933:384832..384914Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1575043694:384832..384914TCONS_00008725-exon-sc0000087-1575043694:384832..384914Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1491911889:385428..385596TCONS_00008725-exon-sc0000087-1491911889:385428..385596Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1510915933:385428..385596TCONS_00008725-exon-sc0000087-1510915933:385428..385596Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1575043694:385428..385596TCONS_00008725-exon-sc0000087-1575043694:385428..385596Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1491911889:386054..386172TCONS_00008725-exon-sc0000087-1491911889:386054..386172Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1510915933:386054..386172TCONS_00008725-exon-sc0000087-1510915933:386054..386172Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1575043694:386054..386172TCONS_00008725-exon-sc0000087-1575043694:386054..386172Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1491911889:386779..387014TCONS_00008725-exon-sc0000087-1491911889:386779..387014Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1510915933:386779..387014TCONS_00008725-exon-sc0000087-1510915933:386779..387014Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1575043694:386779..387014TCONS_00008725-exon-sc0000087-1575043694:386779..387014Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1491911889:387659..387946TCONS_00008725-exon-sc0000087-1491911889:387659..387946Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1510915933:387659..387946TCONS_00008725-exon-sc0000087-1510915933:387659..387946Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1575043694:387659..387946TCONS_00008725-exon-sc0000087-1575043694:387659..387946Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1491911889:388227..388360TCONS_00008725-exon-sc0000087-1491911889:388227..388360Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1510915933:388227..388360TCONS_00008725-exon-sc0000087-1510915933:388227..388360Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1575043694:388227..388360TCONS_00008725-exon-sc0000087-1575043694:388227..388360Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1491911889:389499..389709TCONS_00008725-exon-sc0000087-1491911889:389499..389709Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1510915933:389499..389709TCONS_00008725-exon-sc0000087-1510915933:389499..389709Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1575043694:389499..389709TCONS_00008725-exon-sc0000087-1575043694:389499..389709Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1491911889:390376..390549TCONS_00008725-exon-sc0000087-1491911889:390376..390549Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1510915933:390376..390549TCONS_00008725-exon-sc0000087-1510915933:390376..390549Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1575043694:390376..390549TCONS_00008725-exon-sc0000087-1575043694:390376..390549Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1491911889:391942..392010TCONS_00008725-exon-sc0000087-1491911889:391942..392010Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1510915933:391942..392010TCONS_00008725-exon-sc0000087-1510915933:391942..392010Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1575043694:391942..392010TCONS_00008725-exon-sc0000087-1575043694:391942..392010Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1491911889:393294..393452TCONS_00008725-exon-sc0000087-1491911889:393294..393452Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1510915933:393294..393452TCONS_00008725-exon-sc0000087-1510915933:393294..393452Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1575043694:393294..393452TCONS_00008725-exon-sc0000087-1575043694:393294..393452Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1491911889:394052..395640TCONS_00008725-exon-sc0000087-1491911889:394052..395640Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1510915933:394052..395640TCONS_00008725-exon-sc0000087-1510915933:394052..395640Clytia hemisphaericaexon
TCONS_00008725-exon-sc0000087-1575043694:394052..395640TCONS_00008725-exon-sc0000087-1575043694:394052..395640Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:384832..395640 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.23489e-06	0	0	0.014174	1.77562e-05	0.0824885	0	0.262912	0	0.0887922	0	0	0	0	0	0	0	0	0	0.0157803	0	0.276634	0.00011583	0	0.02128	0.370943	0	0.315484	2.49211e-07	0
Blast
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BLAST of TCONS_00008725 vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.527e-23
Identity = 148/566 (26.15%), Postives = 246/566 (43.46%), Query Frame = 2 
Query:   14 GLTPLEIAASNGQTDAAKALIWGGAASGSRCESTGLNALHYASIGGHSDMIEYLLEY---CDIEETDLTGRNALDHAIDNLNKDAVYSILSHRD-----------WKLALRNK------TIDEDKKL--------------TTPLRKLIKRMPDVAQFVFDRC-ISSPEDLPVDNPDYELVLNYEFIDDVYNDWPCDIVRYEAEEGQKKGDVFTRKKIQRIMEQKETHTFSYMVAYDREDLVSHPLIQASLNKKWQXXXXXXXXXXXXXXVCFLTSLTGYILVTAPLREPYRSKDCTIVQENATWEMIVFV--HYGKFAVIILALLHLIFEIVQMIGQL-----GDYLQLDNLLEWIIYILAIANVIDDFIVLPFLRNGLICGMYQKSFGSLALFLSWLNFVLFMRKVPVFGIYIVMFLYXXXXXXXXXXXXXXXXXXXXXXXXXLLRDGQSPAFKNPWTSLVKVGVMMTGEMGFDELF---FYGGGKVDPXXXXXXXXXXXXXX-XXXXXXXXXXAVDDIAGVQKQAEMTKSTMQIDICLQAEITLPKMFRTRFVVKSQKLRPNK 1573
            G+TPL +AA NG     + L+  GA   S  +  G  ALH+AS+GG++  ++ +L+    C  +  D  G  AL  A    +  AV  +LSH               LAL NK      TI   K+                 P+ ++I+ +P+  + + D C + S ED      DY +  N++++        C +              FT+K   + +  +     + MV  +R +L++HP+ +  L  KW  +    +   L  Y   L  +T   ++   ++         I+ E +    I+     Y     +IL  L  IF   +  GQ+       ++ + N+LEWIIY   I  V+  F+ +P           Q   G++A++  W+NF+L++++    GI+IVM L V         V   F+       F +L + Q P F +P  S+++   MM G++ + E F   +       P+L    ++   +   I+LMNLL+GLAV DIA VQK A + +  MQ+++    E  LP  F  +   KS  + PNK
Sbjct:  482 GMTPLHLAAKNGHDKVVQLLLKKGALFLS--DHNGWTALHHASMGGYTQTMKVILDTNLKC-TDRLDEDGNTALHFAAREGHAKAVALLLSHNADIVLNKQQASFLHLALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGNKCPITEMIEYLPECMKVLLDFCMLHSTEDKSCR--DYYIEYNFKYLQ-------CPL-------------EFTKKTPTQDVIYEPLTALNAMVQNNRIELLNHPVCKEYLLMKWLAYGFRAHMMNLGSYCLGLIPMT---ILVVNIKPGMAFNSTGIINETSDHSEILDTTNSYLIKTCMILVFLSSIFGYCKEAGQIFQQKRNYFMDISNVLEWIIYTTGIIFVLPLFVEIP--------AHLQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVM-LEVILKTLLRSTVVFIFLLLAFGLSFYILLNLQDP-FSSPLLSIIQTFSMMLGDINYRESFLEPYLRNELAHPVLSFAQLVSFTIFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRKVDQKSTIVYPNK 1009
The following BLAST results are available for this feature:
BLAST of TCONS_00008725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRPA13.527e-2326.15Transient receptor potential cation channel subfam... [more]
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