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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008722 ID=TCONS_00008722|Name=TCONS_00008722|organism=Clytia hemisphaerica|type=transcript|length=2204bpRun BLAST on NCBI transcript from alignment at sc0000087:382939..393067+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008722 ID=TCONS_00008722|Name=TCONS_00008722|organism=Clytia hemisphaerica|type=transcript|length=10129bp|location=Sequence derived from alignment at sc0000087:382939..393067+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008722 vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3) HSP 1 Score: 159.458 bits (402), Expect = 2.883e-40 Identity = 190/720 (26.39%), Postives = 333/720 (46.25%), Query Frame = 2
Query: 2 ANINCRDNNQASPIIMASGKSGNAKTVQMMMRQEADILMTDREDCTALHVATKE----NNL--EAVQMLLTSEQRKEMINMKNKDSNTCLHVACAHGYEDIANLLMEKGADVKSRNYNNETPLHLAAYYGQXXXXXXXXXXXXXXXXXXX--XXGNSPLHMAAESGNFDVVKYLLKSGA-SINDKNALGLTPLEIAASNGQTDAAKALIWGGAASGSRCESTGLNALHYASIGGHSDMIEYLLEYCDIEETDLTGRNALDHAIDNLNKDAVYSILSHRDWKLALRNKTIDEDKKLTTPLRKLIKRMPDVAQFVFDRC-ISSPEDLPVDNPDYELVLNYEFIDDVYNDWPCDIVRYEAEEGQKKGDVFTRKKIQRIMEQKETHTFSYMVAYDREDLVSHPLIQASLNKKWQXXXXXXXXXXXXXXVCFLTSLTGYILVTAPLREPYRSKDCTIVQENATWEMIVFV--HYGKFAVIILALLHLIFEIVQMIGQLGD-----YLQLDNLLEWIIYILAIANVIDDFIVLPFLRNGLICGMYQKSFGSLALFLSWLNFVLFMRKVPVFGIYIVMFLYXXXXXXXXXXXXXXXXXXXXXXXXXLLRDGQSPAFKNPWTSLVKVGVMMTGEMGFDELF---FYGGGKVDPXXXXXXXXXXXXXX-XXXXXXXXXXAVDDIAGVQKQAEMTKSTMQIDICLQAEITLPKMFRTRFVVKSQKLRPNK 2098
A+IN D+ SP+I+A+ S + V +++ + A + + D LH+ ++ NL E +QM +Q KE++ ++ D T LH AC G N L+ + S++ + ++PLH AA YG+ + ++ + T N+ +G +PLH+AA++G+ VV+ LLK GA ++D N G T L A+ G T K ++ R + G ALH+A+ GH+ + LL + + + L A+ N K+ V +I+ + W L+ + + P+ ++I+ +P+ + + D C + S ED DY + N++++ C + FT+K + + + + MV +R +L++HP+ + L KW + + L Y L +T ++ ++ I+ E + I+ Y +IL L IF + GQ+ ++ + N+LEWIIY I V+ F+ +P Q G++A++ W+NF+L++++ GI+IVM L V V F+ F +L + Q P F +P S+++ MM G++ + E F + P+L ++ + I+LMNLL+GLAV DIA VQK A + + MQ+++ E LP F + KS + PNK
Sbjct: 333 ADINKIDSEGRSPLILATA-SASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYGLKNLRPEFMQM----QQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGALFLSDHN--GWTALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADIVLNKQQASFLHLALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGN-KCPITEMIEYLPECMKVLLDFCMLHSTEDKSCR--DYYIEYNFKYLQ-------CPL-------------EFTKKTPTQDVIYEPLTALNAMVQNNRIELLNHPVCKEYLLMKWLAYGFRAHMMNLGSYCLGLIPMT---ILVVNIKPGMAFNSTGIINETSDHSEILDTTNSYLIKTCMILVFLSSIFGYCKEAGQIFQQKRNYFMDISNVLEWIIYTTGIIFVLPLFVEIP--------AHLQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVM-LEVILKTLLRSTVVFIFLLLAFGLSFYILLNLQDP-FSSPLLSIIQTFSMMLGDINYRESFLEPYLRNELAHPVLSFAQLVSFTIFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRKVDQKSTIVYPNK 1009 The following BLAST results are available for this feature:
BLAST of TCONS_00008722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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