TCONS_00008707 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008707
Unique NameTCONS_00008707
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008707 ID=TCONS_00008707|Name=TCONS_00008707|organism=Clytia hemisphaerica|type=transcript|length=1286bp
CTTAAATTTACCATACAAATATTGCGAGCGGACTATAAACTACATTCATG
TATGTGAAATAATGTCCTGAGAATCATTTTGCATTGTTAAATCAGAGAAT
AGCACAACGGcaattcgaattcttttcattttctgacTTAATGTCAATAC
TCATCCACTGTAGAGTAGCCCACCTGGCTTCAGGTTTCCCCCACTTTCTC
TCCATTTTCCGATATTCTTTCCttaaataattatgaaaatttctgTCCAT
TGCTAAATTGTCACAATAACTCACTTTTGCTTCTGGCCGTTCGAGAACAC
TTTCCACGGAGTTAATTGGCTTTGAATAATTATCTGTTTTATCATCTTTA
TCGTTGTCTCCTTTTTCTCTTTGGGAAGGATGAGCAAAAGGATTAAATCG
TTTTGGAGTATTCCAAATGTTATGAATGAATCTGACGTGGTTTGACATTT
CCTTCAAATACTTCCCAGAATATCCTTCAAGTAAATTGATCTCATCAACA
AAGTAAGATGGTAGATATCCTTTGGATAAACTTTCAGCAAGGCGCTCATA
CAACATGATGACAACTTGACAATAACTTTTTCTCTCTTCCCAATCTTTCC
AGTGTTCTGGTGGAGTTTGTTCCAACATGTGTAACATTGTTGTTTTGAGG
AGATACGAAGAAATATGCCGGCCTGTCTCTGGATCATCTATTTGTTTAAG
GTTTGCATAATAAATGAATTTTGCCAACAAATAACATTTGTCTTGAAATT
CGGATCTCTTTCCGGCTAAAATGACTTCAGCtttggaaaaagaaattctc
cacTCGTCATTTCTGTCGGATCCAGGTGTTGATTTCAAAACCAAATGACA
TTTATTGTCAGCAATTTCTTTGATGATTTCAGGGGATGGCCAATAACGTT
CCCGTTCAAACCAAGGATGCACAAAGTCCGGCCAAAAGTCAAGTTCAATG
CAGGGAATACAATCTAACTCGACATGTAGACCTTCATCAATATCAGTGTA
GATATTCGGTGCGCCATCCTCGTATTTTCCGTGTCCCTGGACTTTCTGGA
AATGATGAAGTAACTGACTATCCAAATGCTCTTTATCCGACTTATTTTCA
GGAACTAAACTTGAACATTCAGGATCTATACATGATATAAATTCCTCGTT
CCATCTCAAATGATAAAAGCCGACATTTTCCATTGGTGTTAAAATCTTCT
GACGTATCTCTTCTCCGATGCATGCTAGAGGTTTCATAATATCGATTTCG
ATATTTGGTTTATTTTCATACACGCCTCGGCATATG
Run BLAST on NCBI

transcript from alignment at sc0000087:244756..246098+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008707 ID=TCONS_00008707|Name=TCONS_00008707|organism=Clytia hemisphaerica|type=transcript|length=1343bp|location=Sequence derived from alignment at sc0000087:244756..246098+ (Clytia hemisphaerica)
CTTAAATTTACCATACAAATATTGCGAGCGGACTATAAACTACATTCATG TATGTGAAATAATGTCCTGAGAATCATTTTGCATTGTTAAATCAGAGAAT AGCACAACGGcaattcgaattcttttcattttctgacTTAATGTCAATAC TCATCCACTGTAGAGTAGCCCACCTGGCTTCAGGTTTCCCCCACTTTCTC TCCATTTTCCGATATTCTTTCCttaaataattatgaaaatttctgTCCAT TGCTAAATTGTCACAATAACTCACTTTTGCTTCTGGCCGTTCGAGAACAC TTTCCACGGAGTTAATTGGCTTTGAATAATTATCTGTTTTATCATCTTTA TCGTTGTCTCCTTTTTCTCTTTGGGAAGGATGAGCAAAAGGATTAAATCG TTTTGGAGTATTCCAAATGTTATGAATGAATCTGACGTGGTTTGACATTT CCTTCAAATACTTCCCAGAATATCCTTCAAGTAAATTGATCTCATCAACA AAGTAAGATGGTAGATATCCTTTGGATAAACTTTCAGCAAGGCGCTCATA CAACATGATGACAACTTGACAATAACTTTTTCTCTCTTCCCAATCTTTCC AGTGTTCTGGTGGAGTTTGTTCCAACATGTGNCTTTTTCTCTCTTCCCAA TCTTTCCAGTGTTCTGGTGGCGTTTGTTCCAACATGTGTAACATTGTTGT TTTGAGGAGATACGAAGAAATATGCCGGCCTGTCTCTGGATCATCTATTT GTTTAAGGTTTGCATAATAAATGAATTTTGCCAACAAATAACATTTGTCT TGAAATTCGGATCTCTTTCCGGCTAAAATGACTTCAGCtttggaaaaaga aattctccacTCGTCATTTCTGTCGGATCCAGGTGTTGATTTCAAAACCA AATGACATTTATTGTCAGCAATTTCTTTGATGATTTCAGGGGATGGCCAA TAACGTTCCCGTTCAAACCAAGGATGCACAAAGTCCGGCCAAAAGTCAAG TTCAATGCAGGGAATACAATCTAACTCGACATGTAGACCTTCATCAATAT CAGTGTAGATATTCGGTGCGCCATCCTCGTATTTTCCGTGTCCCTGGACT TTCTGGAAATGATGAAGTAACTGACTATCCAAATGCTCTTTATCCGACTT ATTTTCAGGAACTAAACTTGAACATTCAGGATCTATACATGATATAAATT CCTCGTTCCATCTCAAATGATAAAAGCCGACATTTTCCATTGGTGTTAAA ATCTTCTGACGTATCTCTTCTCCGATGCATGCTAGAGGTTTCATAATATC GATTTCGATATTTGGTTTATTTTCATACACGCCTCGGCATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004893XLOC_004893Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008707-exon-sc0000087-1491911889:244756..245381TCONS_00008707-exon-sc0000087-1491911889:244756..245381Clytia hemisphaericaexon
TCONS_00008707-exon-sc0000087-1510915933:244756..245381TCONS_00008707-exon-sc0000087-1510915933:244756..245381Clytia hemisphaericaexon
TCONS_00008707-exon-sc0000087-1575043694:244756..245381TCONS_00008707-exon-sc0000087-1575043694:244756..245381Clytia hemisphaericaexon
TCONS_00008707-exon-sc0000087-1491911889:245439..246098TCONS_00008707-exon-sc0000087-1491911889:245439..246098Clytia hemisphaericaexon
TCONS_00008707-exon-sc0000087-1510915933:245439..246098TCONS_00008707-exon-sc0000087-1510915933:245439..246098Clytia hemisphaericaexon
TCONS_00008707-exon-sc0000087-1575043694:245439..246098TCONS_00008707-exon-sc0000087-1575043694:245439..246098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:244756..246098 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.131765 0.146147 0.241325 0.0776581 6.36678 5.06573 6.92065 6.94914 1.6831 5.68096 1.78184 0.850418 3.73568 2.07132 5.06817 9.02867 1.90343 2.127 2.26571 3.67821 1.74749 2.40457 1.17895 1.59286 1.49517 1.61201 4.88438 1.52243 3.52435 2.63745
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024810Mab-21_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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