TCONS_00008705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008705
Unique NameTCONS_00008705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008705 ID=TCONS_00008705|Name=TCONS_00008705|organism=Clytia hemisphaerica|type=transcript|length=2687bp
GAATCCCGATAAGAAGTGCCatctatatatttattttttaattcatgATT
TTTATGTGCGATTAAAAGTATAATTCTGTTTTTACTTTAGACTAAGCACA
AAATGATCCGTAAATTACAAATGGTGTCGATAGCTGGAGTGTTtggattt
ttatttattctctATTACATTTCCAACCACAAAGTACTTTTGAATAATGA
TAAAGACCACTCTTTGGTCAACCAACAGGTATTTGATACCATTAAAAGTA
ATAAGGAAATTGATTTAGAAATAGGTAAAAAGACTACAGCAGAGTCTAGA
ACTTTTCCAGTGGAAATAACAAGACCTGAAAGAGCTGTTCAACAAGTACA
AATAAACACTAATAATCAGAAAACAGCTCAGGGAATAAAGTACAAAGAAA
ATCTCTACATTCCTTTTTCATTCTTGGAAGAATACTATGGTCATTTTGGA
CAATATGTGTCAAGCAATTCCTTTAAATGGTATCATGTCAACCCTGCATA
TGTCGATCCAGAAACAGTCTATCCAAAGTACAATTACANTTCTGTTTTCA
CTTTAGACTAAGCACAAAATGATCCGTAAATTACAAATGGTGTCGATAGC
TGGAGTGTTtggatttttatttattctctATTACATTTCCAACCACAAAG
TACTTTTGAATAATGATAAAGACCACTCTTTGGTCAACCAACAGGTATTT
GATACCATTAAAAGTAATAAGGAAATTGATTTAGAAATAGGTAAAAAGAC
TACAGCAGAGTCTAGAACTTTTCCAGTGGAAATAACAAGACCTGAAAGAG
CTGTTCAACAAGTACAAATAAACACTAATAATCAGAAAACAGCTCAGGGA
ATAAAGTACAAAGAAAATCTCTACATTCCTTTTTCATTCTTGGAAGAATA
CTATGGTCATTTTGGACAATATGTGTCAAGCAATTCCTTTAAATGGTATC
ATGTCAACCCTGCATATGTCGATCCAGAAACAGTCTATCCAAAGTACAAT
TACAAAGTAGAATATCTGTCATTTCATACTTCCAATGTTCCAAAACGTGC
TCGTGTAAAGTGTATATGTGCAAAGTATGAAGTACCAATCACAACACAAT
GGGACCCGAAGGGCTATTATTATCCTACACAAATTGCACAGTATGGATTG
TCCTTCATATCAAGATATTATCTGGAATCAAAATCCATTCTTCAAAAGAA
ACTCACCTTTCCTGAagATAGTGGCAAGTCAACAATCACTTCCGTCCCCA
AAGaactttttgtaatcaaaaTCAAGTTCAAGGAAGAGCCACAGAACTTT
GAAATTAAAGTTTTGGGTGACAATGAAGTTCAATACACACTTACATACAA
AACAGacAATTCTCAAATTTTGAGAAGTCAAGATGGAAAGACAATCACAC
ATGGACTTGGGAAACTAACAAAAAGAACACTTTTGACGAGAGATTTGAGT
GTTGATTTACTGAAAGGTTTATCTTTTATTGAAGGTGGTAGAAATGGAAA
AACAGTTGACATcatgttgaaaaaaattatttcgatTACAATAACAAAGG
TTGAAGGAGTATCTGAGCTCCTTCTTTTAGATAAAGATTTTGTTAGTTAT
TTCATGGCAGCAGCTGATTGGTTTGTTAAGTTTCAAGATGAAAGTGGAGG
CTGGAAAGTCAATGTTAAACGTAAAATTTGTAATAGAATGGAAGCTGCAC
CAGGGTGGTATAGCGCAATGGGTCAAGGTCAAGCTATATCCCTTTTAACG
CGTGTTTATTTACATACTAAGAAAGAGAAATACTTGGATGCAGCTTTGAA
AGCAACTTTAGTTTTCCATAGAACTTCAACTGAGAATGGTGTCAAAGCAG
ATTTATTTGGCTTACCTTGGTATGAAGAATACCCAACACAAGCTCCATCC
TATGTCTTGAACGGTTTCATGTTTTCATTGTTTGGCTTGTATGATTTATG
GAAAGTTGCCGGTGATTCACGTGGAGGTACTGCTCAACATTTATTCAATG
ATGGTTTTACAACATTAGAAAAAATGATACCTCTTTATGATAACGGTCAT
GGTACATTTTACGATTTACGCCATTTGTCAATACCAGGTATATCCCCTAA
TCGTGCACGTTGGCAATATCATAGAGTCCATTTAGAGCAATTGACTGCTC
TGTTAAGTATTAAAGAaagtaaagttttaaaagaagtatTACAACGTTGG
ACTGGTTATGTTTCTGGTATCCTATCTCGACACAATTGAATGAATTGGTT
GGTGTGAATTTTTAGGacgttttaaaaaaatatattattgtTTTGGTGGG
TGCGTTTTTGTTGTGTTGCATGCTTGTGGTCACTCATGGCAAGTTACGAA
TGAATGTTTTTATAGACattatatttttaatgaaatttcattaatgtttt
aggtttttaatgaaatattttgataatatttttattcaattattttatat
taaaattgaagtttttttatACTTCGTAAGTTTTATTAAAAATGCCccca
aattattttgaataagaTACGAAACAAACGAAAAGTTTGAATCatacaaa
aatgtttgaaaagattTGATACTATCATTTTTAACCGACAAATTGAATTg
caatgttgttgttttttaattaattttgtatttattttttaaaccaaata
ttatttaattttatacatttttcatttgttttttttt
Run BLAST on NCBI

protein sequence of TCONS_00008705-protein

>TCONS_00008705-protein ID=TCONS_00008705-protein|Name=TCONS_00008705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp
MIRKLQMVSIAGVFGFLFILYYISNHKVLLNNDKDHSLVNQQVFDTIKSN
KEIDLEIGKKTTAESRTFPVEITRPERAVQQVQINTNNQKTAQGIKYKEN
LYIPFSFLEEYYGHFGQYVSSNSFKWYHVNPAYVDPETVYPKYNYKVEYL
SFHTSNVPKRARVKCICAKYEVPITTQWDPKGYYYPTQIAQYGLSFISRY
YLESKSILQKKLTFPEDSGKSTITSVPKELFVIKIKFKEEPQNFEIKVLG
DNEVQYTLTYKTDNSQILRSQDGKTITHGLGKLTKRTLLTRDLSVDLLKG
LSFIEGGRNGKTVDIMLKKIISITITKVEGVSELLLLDKDFVSYFMAAAD
WFVKFQDESGGWKVNVKRKICNRMEAAPGWYSAMGQGQAISLLTRVYLHT
KKEKYLDAALKATLVFHRTSTENGVKADLFGLPWYEEYPTQAPSYVLNGF
MFSLFGLYDLWKVAGDSRGGTAQHLFNDGFTTLEKMIPLYDNGHGTFYDL
RHLSIPGISPNRARWQYHRVHLEQLTALLSIKESKVLKEVLQRWTGYVSG
ILSRHN
Run BLAST on NCBI

transcript from alignment at sc0000087:219074..222468+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008705 ID=TCONS_00008705|Name=TCONS_00008705|organism=Clytia hemisphaerica|type=transcript|length=3395bp|location=Sequence derived from alignment at sc0000087:219074..222468+ (Clytia hemisphaerica)
GAATCCCGATAAGAAGTGCCatctatatatttattttttaattcatgATT
TTTATGTGCGATTAAAAGTATAATTCTGTTTTTACTTTAGACTAAGCACA
AAATGATCCGTAAATTACAAATGGTGTCGATAGCTGGAGTGTTtggattt
ttatttattctctATTACATTTCCAACCACAAAGTACTTTTGAATAATGA
TAAAGACCACTCTTTGGTCAACCAACAGGTATTTGATACCATTAAAAGTA
ATAAGGAAATTGATTTAGAAATAGGTAAAAAGACTACAGCAGAGTCTAGA
ACTTTTCCAGTGGAAATAACAAGACCTGAAAGAGCTGTTCAACAAGTACA
AATAAACACTAATAATCAGAAAACAGCTCAGGGAATAAAGTACAAAGAAA
ATCTCTACATTCCTTTTTCATTCTTGGAAGAATACTATGGTCATTTTGGA
CAATATGTGTCAAGCAATTCCTTTAAATGGTATCATGTCAACCCTGCATA
TGTCGATCCAGAAACAGTCTATCCAAAGTACAATTACANTTCTGTTTTCA
CTTTAGACTAAGCACAAAATGATCCGTAAATTACAAATGGTGTCGATAGC
TGGAGTGTTtggatttttatttattctctATTACATTTCCAACCACAAAG
TACTTTTGAATAATGATAAAGACCACTCTTTGGTCAACCAACAGGTATTT
GATACCATTAAAAGTAATAAGGAAATTGATTTAGAAATAGGTAAAAAGAC
TACAGCAGAGTCTAGAACTTTTCCAGTGGAAATAACAAGACCTGAAAGAG
CTGTTCAACAAGTACAAATAAACACTAATAATCAGAAAACAGCTCAGGGA
ATAAAGTACAAAGAAAATCTCTACATTCCTTTTTCATTCTTGGAAGAATA
CTATGGTCATTTTGGACAATATGTGTCAAGCAATTCCTTTAAATGGTATC
ATGTCAACCCTGCATATGTCGATCCAGAAACAGTCTATCCAAAGTACAAT
TACAAAGTAGAATATCTGTCATTTCATACTTCCAATGTTCCAAAACGTGC
TCGTGTAAAGTGTATATGTGCAAAGTATGAAGTACCAATCACAACACAAT
GGGACCCGAAGGGCTATTATTATCCTACACAAATTGCACAGTATGGATTG
TCCTTCATATCAAGATATTATCTGGAATCAAAATCCATTCTTCAAAAGAA
ACTCACCTTTCCTGAaggtataatttttttgaattaataGCATTGGGCTA
CAATGTCGAGAAGGCTTTTTTTGTTGGCCCTTCTcttgaagtttcaaaaa
tttccacaaAAACTTATTGAAACaactttgattttaaattttttttagag
tTCTCTGAATAAAAAATCCGACCTCTTGACATGGTTAgagtaaaataatt
ttctcaaataacCTACTTTTGTTATTGTGAGCATCAATCTAATTGTACTT
TAAGTGTCTCTGAACGTAAGCAATCTTCACTTAAGGCCTTAAAACAATAT
GTAGGcctagggaaattccccattcTTGAAgttcttaagtaaaattttac
ataGATAATATGTGCAAAAGCTTAATGATACATAACCCACAGCTTTGGTC
TGTTCATTCCTATGGTTTCAATGCCAGAAAATGTTGAATATGCTCAAACT
TTTAATGTAAGTTCTTTCACATCAGATAGTGGCAAGTCAACAATCACTTC
CGTCCCCAAAGaactttttgtaatcaaaaTCAAGTTCAAGGAAGAGCCAC
AGAACTTTGAAATTAAAGTTTTGGGTGACAATGAAGTTCAATACACACTT
ACATACAAAACAGGTACTGTGAAAAATTCTCAGAAAAGatgtcttttttt
attgcaGCAATCTTAGCAAAGCACTGCACCCCTGATCACAAATTCAAAAA
TGCTTCAAGAAAGGCTTTATTTGATCATATTCCCAACATTTCTGAGATCG
TAAatctagattttttttcaattgactTAAAAATTTAGTAAAATAGTATT
TTGCTTTTACTGTAGCTTAGATTTGATCACCATCATCTAGAagaatcttc
ttctttttttcagacAATTCTCAAATTTTGAGAAGTCAAGATGGAAAGAC
AATCACACATGGACTTGGGAAACTAACAAAAAGAACACTTTTGACGAGAG
ATTTGAGTGTTGATTTACTGAAAGGTTTATCTTTTATTGAAGGTGGTAGA
AATGGAAAAACAGTTGACATcatgttgaaaaaaattatttcgatTACAAT
AACAAAGGTTGAAGGAGTATCTGAGCTCCTTCTTTTAGATAAAGATTTTG
TTAGTTATTTCATGGCAGCAGCTGATTGGTTTGTTAAGTTTCAAGATGAA
AGTGGAGGCTGGAAAGTCAATGTTAAACGTAAAATTTGTAATAGAATGGA
AGCTGCACCAGGGTGGTATAGCGCAATGGGTCAAGGTCAAGCTATATCCC
TTTTAACGCGTGTTTATTTACATACTAAGAAAGAGAAATACTTGGATGCA
GCTTTGAAAGCAACTTTAGTTTTCCATAGAACTTCAACTGAGAATGGTGT
CAAAGCAGATTTATTTGGCTTACCTTGGTATGAAGAATACCCAACACAAG
CTCCATCCTATGTCTTGAACGGTTTCATGTTTTCATTGTTTGGCTTGTAT
GATTTATGGAAAGTTGCCGGTGATTCACGTGGAGGTACTGCTCAACATTT
ATTCAATGATGGTTTTACAACATTAGAAAAAATGATACCTCTTTATGATA
ACGGTCATGGTACATTTTACGATTTACGCCATTTGTCAATACCAGGTATA
TCCCCTAATCGTGCACGTTGGCAATATCATAGAGTCCATTTAGAGCAATT
GACTGCTCTGTTAAGTATTAAAGAaagtaaagttttaaaagaagtatTAC
AACGTTGGACTGGTTATGTTTCTGGTATCCTATCTCGACACAATTGAATG
AATTGGTTGGTGTGAATTTTTAGGacgttttaaaaaaatatattattgtT
TTGGTGGGTGCGTTTTTGTTGTGTTGCATGCTTGTGGTCACTCATGGCAA
GTTACGAATGAATGTTTTTATAGACattatatttttaatgaaatttcatt
aatgttttaggtttttaatgaaatattttgataatatttttattcaatta
ttttatattaaaattgaagtttttttatACTTCGTAAGTTTTATTAAAAA
TGCCcccaaattattttgaataagaTACGAAACAAACGAAAAGTTTGAAT
CatacaaaaatgtttgaaaagattTGATACTATCATTTTTAACCGACAAA
TTGAATTgcaatgttgttgttttttaattaattttgtatttattttttaa
accaaatattatttaattttatacatttttcatttgttttttttt

Coding sequence (CDS) from alignment at sc0000087:219074..222468+

>TCONS_00008705 ID=TCONS_00008705|Name=TCONS_00008705|organism=Clytia hemisphaerica|type=CDS|length=5013bp|location=Sequence derived from alignment at sc0000087:219074..222468+ (Clytia hemisphaerica)
ATGATCCGTAAATTACAAATGGTGTCGATAGCTGGAGTGTTtggattttt
atttattctctATTACATTTCCAACCACAAAGTACTTTTGAATAATGATA
AAGACCACTCTTTGGTCAACCAACAGGTATTTGATACCATTAAAAGTAAT
AAGGAAATTGATTTAGAAATAGGTAAAAAGACTACAGCAGAGTCTAGAAC
TTTTCCAGTGGAAATAACAAGACCTGAAAGAGCTGTTCAACAAGTACAAA
TAAACACTAATAATCAGAAAACAGCTCAGGGAATAAAGTACAAAGAAAAT
CTCTACATTCCTTTTTCATTCTTGGAAGAATACTATGGTCATTTTGGACA
ATATGTGTCAAGCAATTCCTTTAAATGGTATCATGTCAACCCTGCATATG
TCGATCCAGAAACAGTCTATCCAAAGTACAATTACAAAGTAGAATATCTG
TCATTTCATACTTCCAATGTTCCAAAACGTGCTCGTGTAAAGTGTATATG
TGCAAAGTATGAAGTACCAATCACAACACAATGGGACCCGAAGGGCTATT
ATTATCCTACACAAATTGCACAGTATGGATTGTCCTTCATATCAAGATAT
TATCTGGAATCAAAATCCATTCTTCAAAAGAAACTCACCTTTCCTGAagA
TAGTGGCAAGTCAACAATCACTTCCGTCCCCAAAGaactttttgtaatca
aaaTCAAGTTCAAGGAAGAGCCACAGAACTTTGAAATTAAAGTTTTGGGT
GACAATGAAGTTCAATACACACTTACATACAAAACAGacAATTCTCAAAT
TTTGAGAAGTCAAGATGGAAAGACAATCACACATGGACTTGGGAAACTAA
CAAAAAGAACACTTTTGACGAGAGATTTGAGTGTTGATTTACTGAAAGGT
TTATCTTTTATTGAAGGTGGTAGAAATGGAAAAACAGTTGACATcatgtt
gaaaaaaattatttcgatTACAATAACAAAGGTTGAAGGAGTATCTGAGC
TCCTTCTTTTAGATAAAGATTTTGTTAGTTATTTCATGGCAGCAGCTGAT
TGGTTTGTTAAGTTTCAAGATGAAAGTGGAGGCTGGAAAGTCAATGTTAA
ACGTAAAATTTGTAATAGAATGGAAGCTGCACCAGGGTGGTATAGCGCAA
TGGGTCAAGGTCAAGCTATATCCCTTTTAACGCGTGTTTATTTACATACT
AAGAAAGAGAAATACTTGGATGCAGCTTTGAAAGCAACTTTAGTTTTCCA
TAGAACTTCAACTGAGAATGGTGTCAAAGCAGATTTATTTGGCTTACCTT
GGTATGAAGAATACCCAACACAAGCTCCATCCTATGTCTTGAACGGTTTC
ATGTTTTCATTGTTTGGCTTGTATGATTTATGGAAAGTTGCCGGTGATTC
ACGTGGAGGTACTGCTCAACATTTATTCAATGATGGTTTTACAACATTAG
AAAAAATGATACCTCTTTATGATAACGGTCATGGTACATTTTACGATTTA
CGCCATTTGTCAATACCAGGTATATCCCCTAATCGTGCACGTTGGCAATA
TCATAGAGTCCATTTAGAGCAATTGACTGCTCTGTTAAGTATTAAAGAaa
gtaaagttttaaaagaagtatTACAACGTTGGACTGGTTATGTTTCTGGT
ATCCTATCTCGACACAATTGAATGATCCGTAAATTACAAATGGTGTCGAT
AGCTGGAGTGTTtggatttttatttattctctATTACATTTCCAACCACA
AAGTACTTTTGAATAATGATAAAGACCACTCTTTGGTCAACCAACAGGTA
TTTGATACCATTAAAAGTAATAAGGAAATTGATTTAGAAATAGGTAAAAA
GACTACAGCAGAGTCTAGAACTTTTCCAGTGGAAATAACAAGACCTGAAA
GAGCTGTTCAACAAGTACAAATAAACACTAATAATCAGAAAACAGCTCAG
GGAATAAAGTACAAAGAAAATCTCTACATTCCTTTTTCATTCTTGGAAGA
ATACTATGGTCATTTTGGACAATATGTGTCAAGCAATTCCTTTAAATGGT
ATCATGTCAACCCTGCATATGTCGATCCAGAAACAGTCTATCCAAAGTAC
AATTACAAAGTAGAATATCTGTCATTTCATACTTCCAATGTTCCAAAACG
TGCTCGTGTAAAGTGTATATGTGCAAAGTATGAAGTACCAATCACAACAC
AATGGGACCCGAAGGGCTATTATTATCCTACACAAATTGCACAGTATGGA
TTGTCCTTCATATCAAGATATTATCTGGAATCAAAATCCATTCTTCAAAA
GAAACTCACCTTTCCTGAagATAGTGGCAAGTCAACAATCACTTCCGTCC
CCAAAGaactttttgtaatcaaaaTCAAGTTCAAGGAAGAGCCACAGAAC
TTTGAAATTAAAGTTTTGGGTGACAATGAAGTTCAATACACACTTACATA
CAAAACAGacAATTCTCAAATTTTGAGAAGTCAAGATGGAAAGACAATCA
CACATGGACTTGGGAAACTAACAAAAAGAACACTTTTGACGAGAGATTTG
AGTGTTGATTTACTGAAAGGTTTATCTTTTATTGAAGGTGGTAGAAATGG
AAAAACAGTTGACATcatgttgaaaaaaattatttcgatTACAATAACAA
AGGTTGAAGGAGTATCTGAGCTCCTTCTTTTAGATAAAGATTTTGTTAGT
TATTTCATGGCAGCAGCTGATTGGTTTGTTAAGTTTCAAGATGAAAGTGG
AGGCTGGAAAGTCAATGTTAAACGTAAAATTTGTAATAGAATGGAAGCTG
CACCAGGGTGGTATAGCGCAATGGGTCAAGGTCAAGCTATATCCCTTTTA
ACGCGTGTTTATTTACATACTAAGAAAGAGAAATACTTGGATGCAGCTTT
GAAAGCAACTTTAGTTTTCCATAGAACTTCAACTGAGAATGGTGTCAAAG
CAGATTTATTTGGCTTACCTTGGTATGAAGAATACCCAACACAAGCTCCA
TCCTATGTCTTGAACGGTTTCATGTTTTCATTGTTTGGCTTGTATGATTT
ATGGAAAGTTGCCGGTGATTCACGTGGAGGTACTGCTCAACATTTATTCA
ATGATGGTTTTACAACATTAGAAAAAATGATACCTCTTTATGATAACGGT
CATGGTACATTTTACGATTTACGCCATTTGTCAATACCAGGTATATCCCC
TAATCGTGCACGTTGGCAATATCATAGAGTCCATTTAGAGCAATTGACTG
CTCTGTTAAGTATTAAAGAaagtaaagttttaaaagaagtatTACAACGT
TGGACTGGTTATGTTTCTGGTATCCTATCTCGACACAATTGAATGATCCG
TAAATTACAAATGGTGTCGATAGCTGGAGTGTTtggatttttatttattc
tctATTACATTTCCAACCACAAAGTACTTTTGAATAATGATAAAGACCAC
TCTTTGGTCAACCAACAGGTATTTGATACCATTAAAAGTAATAAGGAAAT
TGATTTAGAAATAGGTAAAAAGACTACAGCAGAGTCTAGAACTTTTCCAG
TGGAAATAACAAGACCTGAAAGAGCTGTTCAACAAGTACAAATAAACACT
AATAATCAGAAAACAGCTCAGGGAATAAAGTACAAAGAAAATCTCTACAT
TCCTTTTTCATTCTTGGAAGAATACTATGGTCATTTTGGACAATATGTGT
CAAGCAATTCCTTTAAATGGTATCATGTCAACCCTGCATATGTCGATCCA
GAAACAGTCTATCCAAAGTACAATTACAAAGTAGAATATCTGTCATTTCA
TACTTCCAATGTTCCAAAACGTGCTCGTGTAAAGTGTATATGTGCAAAGT
ATGAAGTACCAATCACAACACAATGGGACCCGAAGGGCTATTATTATCCT
ACACAAATTGCACAGTATGGATTGTCCTTCATATCAAGATATTATCTGGA
ATCAAAATCCATTCTTCAAAAGAAACTCACCTTTCCTGAagATAGTGGCA
AGTCAACAATCACTTCCGTCCCCAAAGaactttttgtaatcaaaaTCAAG
TTCAAGGAAGAGCCACAGAACTTTGAAATTAAAGTTTTGGGTGACAATGA
AGTTCAATACACACTTACATACAAAACAGacAATTCTCAAATTTTGAGAA
GTCAAGATGGAAAGACAATCACACATGGACTTGGGAAACTAACAAAAAGA
ACACTTTTGACGAGAGATTTGAGTGTTGATTTACTGAAAGGTTTATCTTT
TATTGAAGGTGGTAGAAATGGAAAAACAGTTGACATcatgttgaaaaaaa
ttatttcgatTACAATAACAAAGGTTGAAGGAGTATCTGAGCTCCTTCTT
TTAGATAAAGATTTTGTTAGTTATTTCATGGCAGCAGCTGATTGGTTTGT
TAAGTTTCAAGATGAAAGTGGAGGCTGGAAAGTCAATGTTAAACGTAAAA
TTTGTAATAGAATGGAAGCTGCACCAGGGTGGTATAGCGCAATGGGTCAA
GGTCAAGCTATATCCCTTTTAACGCGTGTTTATTTACATACTAAGAAAGA
GAAATACTTGGATGCAGCTTTGAAAGCAACTTTAGTTTTCCATAGAACTT
CAACTGAGAATGGTGTCAAAGCAGATTTATTTGGCTTACCTTGGTATGAA
GAATACCCAACACAAGCTCCATCCTATGTCTTGAACGGTTTCATGTTTTC
ATTGTTTGGCTTGTATGATTTATGGAAAGTTGCCGGTGATTCACGTGGAG
GTACTGCTCAACATTTATTCAATGATGGTTTTACAACATTAGAAAAAATG
ATACCTCTTTATGATAACGGTCATGGTACATTTTACGATTTACGCCATTT
GTCAATACCAGGTATATCCCCTAATCGTGCACGTTGGCAATATCATAGAG
TCCATTTAGAGCAATTGACTGCTCTGTTAAGTATTAAAGAaagtaaagtt
ttaaaagaagtatTACAACGTTGGACTGGTTATGTTTCTGGTATCCTATC
TCGACACAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004891XLOC_004891Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008705-proteinTCONS_00008705-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008705-exon-sc0000087-1491911889:219074..220290TCONS_00008705-exon-sc0000087-1491911889:219074..220290Clytia hemisphaericaexon
TCONS_00008705-exon-sc0000087-1510915933:219074..220290TCONS_00008705-exon-sc0000087-1510915933:219074..220290Clytia hemisphaericaexon
TCONS_00008705-exon-sc0000087-1575043694:219074..220290TCONS_00008705-exon-sc0000087-1575043694:219074..220290Clytia hemisphaericaexon
TCONS_00008705-exon-sc0000087-1491911889:220749..220886TCONS_00008705-exon-sc0000087-1491911889:220749..220886Clytia hemisphaericaexon
TCONS_00008705-exon-sc0000087-1510915933:220749..220886TCONS_00008705-exon-sc0000087-1510915933:220749..220886Clytia hemisphaericaexon
TCONS_00008705-exon-sc0000087-1575043694:220749..220886TCONS_00008705-exon-sc0000087-1575043694:220749..220886Clytia hemisphaericaexon
TCONS_00008705-exon-sc0000087-1491911889:221137..222468TCONS_00008705-exon-sc0000087-1491911889:221137..222468Clytia hemisphaericaexon
TCONS_00008705-exon-sc0000087-1510915933:221137..222468TCONS_00008705-exon-sc0000087-1510915933:221137..222468Clytia hemisphaericaexon
TCONS_00008705-exon-sc0000087-1575043694:221137..222468TCONS_00008705-exon-sc0000087-1575043694:221137..222468Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:219074..222468 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.66078	2.3874	1.05369	0.61852	19.9832	14.2805	13.2714	13.4584	6.20127	7.27779	6.86093	4.28126	3.76113	3.16433	5.18676	4.36221	7.46971	6.8961	2.8308	3.31261	4.44347	4.23345	7.94519	9.16349	2.87449	4.12936	6.87105	3.77124	8.50161	6.75134
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010598C5-epim
Vocabulary: Molecular Function
TermDefinition
GO:0016857racemase and epimerase activity, acting on carbohydrates and derivatives
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006024glycosaminoglycan biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006024 glycosaminoglycan biosynthetic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives
Blast
[Close]
BLAST of TCONS_00008705 vs. Swiss-Prot (Human)
Match: GLCE (D-glucuronyl C5-epimerase OS=Homo sapiens GN=GLCE PE=1 SV=3)

HSP 1 Score: 299.671 bits (766), Expect = 2.058e-89
Identity = 187/517 (36.17%), Postives = 280/517 (54.16%), Query Frame = 2 
Query:  806 QQVQINTNNQKTAQGIKYKENLYIPFSFLEEYYGHFGQYVSSNSFKWYHVNPAYVDPETVYPKYNYKVEYLSFHTSNVPKRARVKCICAKYEVPITTQWDPKGYYYPTQIAQYGLSFISRYYLESKSILQKKLTFPE-DSGKSTITSVPKELFVIKIKFKEEPQN--------------------------FEIKVLGDNEVQYTL----------TYKTDNSQILRSQDGKTIXXXXXXXXXXXXXXXDLSVDLLKGLSFIEGGRNGKTVDIMLKKIISITITKVEG-VSELLLLDKDFVSYFMAAADWFVKFQDESGGWKVNVKRKICNRMEA-APGWYSAMGQGQAISLLTRVYLHTKKEKYLDAALKATLVFHRTSTENGVKADLFGL-PWYEEYPTQAPSYVLNGFMFSLFGLYDLWKVAGDSRGGTAQHLFNDGFTTLEKMIPLYDNGHGTFYDLRHLSIPGISPNRARWQYHRVHLEQLTALLSIKESKVLKEVLQRWTGYVSGILSRHN 2236
            +++    N++ T +G +    +++PF+++E+Y+  +G+ V  + +  +  + +Y         Y+    ++SF   NV  R RVKCI     VP++TQW P+GY+YP QIAQYGLS  S+   E    ++   T  + D  K    +VPK  F+  +  K    N                          F++K L +  V   L           +   N+Q++  ++ + I +G+G  T  + +TRDL  DL KG+  +   +  K   IM KK++ + I K +G +  + +     ++ F AA+DW V+ QDE GGW + V RK+    ++  PGWYSAM QGQAIS L R YL TK   +L++AL+AT  +   S ++GVKA       WYEEYPT   S+VLNGFM+SL GLYDL + AG+  G  A+ L+  G  +L+ M+PLYD G GT YDLRH  + GI+PN ARW YH  H+ QL  L +I ES V KE ++RW  Y+ G  ++HN
Sbjct:  105 EEIDCLINDEHTIKGRREGNEVFLPFTWVEKYFDVYGKVVQYDGYDRFEFSHSYSKVYAQRAPYHPDGVFMSFEGYNVEVRDRVKCISGVEGVPLSTQWGPQGYFYPIQIAQYGLSHYSKNLTEKPPHIEVYETAEDRDKNKPNDWTVPKGCFMANVADKSRFTNVKQFIAPETSEGVSLQLGNTKDFIISFDLKFLTNGSVSVVLETTEKNQLFTIHYVSNAQLIAFKE-RDIYYGIGPRTSWSTVTRDLVTDLRKGVG-LSNTKAVKPTKIMPKKVVRL-IAKGKGFLDNITISTTAHMAAFFAASDWLVRNQDEKGGWPIMVTRKLGEGFKSLEPGWYSAMAQGQAISTLVRAYLLTKDHIFLNSALRATAPYKFLSEQHGVKAVFMNKHDWYEEYPTTPSSFVLNGFMYSLIGLYDLKETAGEKLGKEARSLYERGMESLKAMLPLYDTGSGTIYDLRHFML-GIAPNLARWDYHTTHINQLQLLSTIDESPVFKEFVKRWKSYLKGSRAKHN 617
The following BLAST results are available for this feature:
BLAST of TCONS_00008705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLCE2.058e-8936.17D-glucuronyl C5-epimerase OS=Homo sapiens GN=GLCE ... [more]
back to top