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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008701 ID=TCONS_00008701|Name=TCONS_00008701|organism=Clytia hemisphaerica|type=transcript|length=4077bpRun BLAST on NCBI transcript from alignment at sc0000087:90558..100387+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008701 ID=TCONS_00008701|Name=TCONS_00008701|organism=Clytia hemisphaerica|type=transcript|length=9830bp|location=Sequence derived from alignment at sc0000087:90558..100387+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008701 vs. Swiss-Prot (Human)
Match: RHBG (Ammonium transporter Rh type B OS=Homo sapiens GN=RHBG PE=1 SV=2) HSP 1 Score: 270.781 bits (691), Expect = 2.402e-79 Identity = 151/396 (38.13%), Postives = 229/396 (57.83%), Query Frame = 2
Query: 524 FVVFVDYGDD------FKPNIKNENRKDFNQKLPAFQDLHIMVFLGFGLIMTFLKRYSRGMLVHAFLIGGLVIQWATLLQGFF-SMRQSKVELTLDRMINADYXXXXXXXXXXXXIGKVNSLQLLIIALIETIFFAINESLCKQLLQISDFGQSMTVHLFGAIFGIAISRMIFDKRVCTSQALSTS-NKSEMYSMIGTLFLWIYFPSLNSAFVEEDSAHRRAIANTYYALAASCITSFSLTVLQSPDHRYNILHLQNATITGGIAIGSVAALMVRPWGAIILGVLASLISILTYKYILPKLRRRFNIHDVRGVYATHGMPGIVSGLAAVVCAFLATEEHYGTSLYQLYPARVPSSNTTKYQDLIKIHPEIPASQGRSAYIQGAYQFGGLIVTVILA 1687
F VFV Y + N N + +F + P+FQD+H MVF+GFG +M FL+RY + FL+ +QW+TL+QGF S + + ++ MINAD+ VL+S GA++GK QLL++AL+E + F INE + LL + D G SMT+H FGA FG+ +SR+++ ++ S+ S S++++MIGT+FLWI++PS N+A + R NTYY+LAAS + +F+L+ L D R +++H+QNA + GG+ +G+ + +M+ P+GA+ G LA +S L YK+ P L +F + D GV+ HGMPG++ L V+ A LAT E YG L ++P + A RSA Q +Q GL VT++ A
Sbjct: 30 FAVFVRYNHKTDAALWHRSNHSNAD-NEFYFRYPSFQDVHAMVFVGFGFLMVFLQRYGFSSVGFTFLLAAFALQWSTLVQGFLHSFHGGHIHVGVESMINADFCAGAVLISFGAVLGKTGPTQLLLMALLEVVLFGINEFVLLHLLGVRDAGGSMTIHTFGAYFGLVLSRVLYRPQLEKSKHRQGSVYHSDLFAMIGTIFLWIFWPSFNAALTALGAGQHRTALNTYYSLAASTLGTFALSALVGEDGRLDMVHIQNAALAGGVVVGTSSEMMLTPFGALAAGFLAGTVSTLGYKFFTPILESKFKVQDTCGVHNLHGMPGVLGALLGVLVAGLATHEAYGDGLESVFP--------------------LIAEGQRSATSQAMHQLFGLFVTLMFA 404 The following BLAST results are available for this feature:
BLAST of TCONS_00008701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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