TCONS_00008673 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008673
Unique NameTCONS_00008673
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008673 ID=TCONS_00008673|Name=TCONS_00008673|organism=Clytia hemisphaerica|type=transcript|length=588bp
atttgcaCTATAAACAGAATTCTAAATCGGTATACTTAGATATTGTTGGA
AGGCGTACGGGTTCgacggtgtgacggtattaTACTTTCTTtctgtcggt
gtttcggtgtttgaagaaatgaatgacggtattttggtgtcaAGTGCTAT
GCATTGTGGTCACAAAATTAGGATTTTAGCAATTTAGATCTCGTTCTGGA
TCGTGATTCAAGAAAAaagtgtcggtatttcggtgttgaTCTGTTGAGCA
AAATATTCCGATTTTGAGACGATCCTGCTTGAAACTCCACAAGGtgtttt
tatcaaaacttttctgtGATGGCACTGGCTGCACAAGTTGTGTGAATGAT
TTTCAAAGTAGAATTTTATAATTGCCTCAGTCAATTAAGTTTAAAGGTAT
TTATGTTACATTTGTAACGTATGAGATTCAAAGAGTTACAGTGAAAGCAA
GCGGTGCTCGAACTCCAAAGGCTATTTTGAAGAGACTTTGATATAGGTTA
GATTCCTACTTTTAATTGTTTACAGGCTTAAGAAGAGTATCAATATTTCT
GATACCCACTTTGTGAAGTCTTCTATGCTatatccccg
Run BLAST on NCBI

transcript from alignment at sc0000086:665527..666114

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008673 ID=TCONS_00008673|Name=TCONS_00008673|organism=Clytia hemisphaerica|type=transcript|length=588bp|location=Sequence derived from alignment at sc0000086:665527..666114 (Clytia hemisphaerica)
cggggatatAGCATAGAAGACTTCACAAAGTGGGTATCAGAAATATTGAT
ACTCTTCTTAAGCCTGTAAACAATTAAAAGTAGGAATCTAACCTATATCA
AAGTCTCTTCAAAATAGCCTTTGGAGTTCGAGCACCGCTTGCTTTCACTG
TAACTCTTTGAATCTCATACGTTACAAATGTAACATAAATACCTTTAAAC
TTAATTGACTGAGGCAATTATAAAATTCTACTTTGAAAATCATTCACACA
ACTTGTGCAGCCAGTGCCATCacagaaaagttttgataaaaacaCCTTGT
GGAGTTTCAAGCAGGATCGTCTCAAAATCGGAATATTTTGCTCAACAGAt
caacaccgaaataccgacacttTTTTCTTGAATCACGATCCAGAACGAGA
TCTAAATTGCTAAAATCCTAATTTTGTGACCACAATGCATAGCACTtgac
accaaaataccgtcattcatttcttcaaacaccgaaacaccgacagaAAG
AAAGTAtaataccgtcacaccgtcGAACCCGTACGCCTTCCAACAATATC
TAAGTATACCGATTTAGAATTCTGTTTATAGtgcaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004873XLOC_004873Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008673-exon-sc0000086-1491911889:665527..666114TCONS_00008673-exon-sc0000086-1491911889:665527..666114Clytia hemisphaericaexon
TCONS_00008673-exon-sc0000086-1510915933:665527..666114TCONS_00008673-exon-sc0000086-1510915933:665527..666114Clytia hemisphaericaexon
TCONS_00008673-exon-sc0000086-1575043694:665527..666114TCONS_00008673-exon-sc0000086-1575043694:665527..666114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:665527..666114 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.105989	0	1.89355	1.89533	0.722093	1.57737	1.18324	0.488543	0.189677	0.436401	0	0	0.106308	0.171128	0.0702718	0	0.895574	0.312385	0	0	0	0	0	0	0.128356	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top