TCONS_00008661 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008661
Unique NameTCONS_00008661
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008661 ID=TCONS_00008661|Name=TCONS_00008661|organism=Clytia hemisphaerica|type=transcript|length=757bp
CCACAATTTTGACtcaaataacaaatttttttttttaatcatatctCCAC
GTTGAGGTCTATTACCCTGTGAAATCTCTATGGCTGACTCAAAAAATATG
AAGAGTTAttccaaaaagttgatttttgagcattttttacaatgtcacac
tatttttgattagCATCTATATCATAACTTTCACTATTCATTTCTAGGCA
TCCATGTGATAATACCGTATCACGCATTGTTGATGAACACAGAGACAAAT
TATTCACTGATCTTGAAAAGCTTTTCTCAACTTTACAAAGAGCTGACAGA
GATACAAGCTTCCTGTCTCCTCACATTGGACAGAGTCTTTACCTTTGTTT
CTGAAGACACATTCCAAAATTCCCTTCCAAAGAAGAAATTTCTATTACAA
TCGCTGCAGGAAAACATCAACAAATATCCCAAAGAGATTGAGAAGATCAT
TCGCATTGCACTGGAGAAGTTTGCAGAAGGATTTCATCATCAGAAAGGAG
CAATATTTGGGTTTGGTAAGAATGCAGATGACGAAAAAATGTATTCAAAA
TCTCGACAGCAACCTCTGATGAATTGGAGACGCTTGAAGCATATGTTGAT
GTCCACAATATAGGAGAAGAAAGAAATGTTGTTCTTGTTGCTTCAACTAT
GCTTGCACTGTTAGAGTTGGATCCAGAAATTTAGAGTCAGCTTCACGTAA
GGTAGTCATAAAGTCTTCAACAGATGTTTTGTCAAAAGTTTCACCAGGAG
AATTTAG
Run BLAST on NCBI

protein sequence of TCONS_00008661-protein

>TCONS_00008661-protein ID=TCONS_00008661-protein|Name=TCONS_00008661-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MNTETNYSLILKSFSQLYKELTEIQASCLLTLDRVFTFVSEDTFQNSLPK
KKFLLQSLQENINKYPKEIEKIIRIALEKFAEGFHHQKGAIFGFGKNADD
EKMYSKSRQQPLMNWRRLKHMLMSTI
Run BLAST on NCBI

transcript from alignment at sc0000086:548135..548891

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008661 ID=TCONS_00008661|Name=TCONS_00008661|organism=Clytia hemisphaerica|type=transcript|length=757bp|location=Sequence derived from alignment at sc0000086:548135..548891 (Clytia hemisphaerica)
CTAAATTCTCCTGGTGAAACTTTTGACAAAACATCTGTTGAAGACTTTAT
GACTACCTTACGTGAAGCTGACTCTAAATTTCTGGATCCAACTCTAACAG
TGCAAGCATAGTTGAAGCAACAAGAACAACATTTCTTTCTTCTCCTATAT
TGTGGACATCAACATATGCTTCAAGCGTCTCCAATTCATCAGAGGTTGCT
GTCGAGATTTTGAATACATTTTTTCGTCATCTGCATTCTTACCAAACCCA
AATATTGCTCCTTTCTGATGATGAAATCCTTCTGCAAACTTCTCCAGTGC
AATGCGAATGATCTTCTCAATCTCTTTGGGATATTTGTTGATGTTTTCCT
GCAGCGATTGTAATAGAAATTTCTTCTTTGGAAGGGAATTTTGGAATGTG
TCTTCAGAAACAAAGGTAAAGACTCTGTCCAATGTGAGGAGACAGGAAGC
TTGTATCTCTGTCAGCTCTTTGTAAAGTTGAGAAAAGCTTTTCAAGATCA
GTGAATAATTTGTCTCTGTGTTCATCAACAATGCGTGATACGGTATTATC
ACATGGATGCCTAGAAATGAATAGTGAAAGTTATGATATAGATGctaatc
aaaaatagtgtgacattgtaaaaaatgctcaaaaatcaactttttggaaT
AACTCTTCATATTTTTTGAGTCAGCCATAGAGATTTCACAGGGTAATAGA
CCTCAACGTGGagatatgattaaaaaaaaaaatttgttatttgaGTCAAA
ATTGTGG

Coding sequence (CDS) from alignment at sc0000086:548135..548891

>TCONS_00008661 ID=TCONS_00008661|Name=TCONS_00008661|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0000086:548135..548891 (Clytia hemisphaerica)
CTATATTGTGGACATCAACATATGCTTCAAGCGTCTCCAATTCATCAGAG
GTTGCTGTCGAGATTTTGAATACATTTTTTCGTCATCTGCATTCTTACCA
AACCCAAATATTGCTCCTTTCTGATGATGAAATCCTTCTGCAAACTTCTC
CAGTGCAATGCGAATGATCTTCTCAATCTCTTTGGGATATTTGTTGATGT
TTTCCTGCAGCGATTGTAATAGAAATTTCTTCTTTGGAAGGGAATTTTGG
AATGTGTCTTCAGAAACAAAGGTAAAGACTCTGTCCAATGTGAGGAGACA
GGAAGCTTGTATCTCTGTCAGCTCTTTGTAAAGTTGAGAAAAGCTTTTCA
AGATCAGTGAATAATTTGTCTCTGTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004861XLOC_004861Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008661-proteinTCONS_00008661-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008661-exon-sc0000086-1491911889:548135..548891TCONS_00008661-exon-sc0000086-1491911889:548135..548891Clytia hemisphaericaexon
TCONS_00008661-exon-sc0000086-1510915933:548135..548891TCONS_00008661-exon-sc0000086-1510915933:548135..548891Clytia hemisphaericaexon
TCONS_00008661-exon-sc0000086-1575043694:548135..548891TCONS_00008661-exon-sc0000086-1575043694:548135..548891Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:548135..548891 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.059896	0.505938	0.389116	0.721293	1.45138	1.58475	2.04874	0.972827	0.818091	0.462552	0	0.10826	0.243642	0.052469	0.508432	0.0906322	0.721125	0.631001	0.231379	0.366262	0.269892	0.300467	0.309848	0.547185	0.800089	0.785401	1.504	0.680008	0.20393	0.803175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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