TCONS_00008658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008658
Unique NameTCONS_00008658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008658 ID=TCONS_00008658|Name=TCONS_00008658|organism=Clytia hemisphaerica|type=transcript|length=797bp
GGGTTAGCGAATTTTCTGCTAAAAATGAGCCATTCTAACATTATCTAAGA
ATAGTTGATTATCCCTTTTAAGTTCATCCCTTCTATCAAAATATTGAGCT
AATTTTAACAAAATGGAAACAtatgataaacaaacaaacaaaatatcaaG
CTTGAAATTAAAAGACTATTTTAAAGAGCAAACTTGCTTGTATTAATTAG
TTATGCTTTCCCCAGTCAATTATCAAACAATTACTTTACCAGAAAACgaa
tttagaaaaatctaaaaataatcGTCAAATATACTATCCATGTTTTCATC
ATCACTAGTGGAAGAAAAGTGACCAGGATGTAATCTATTTTCATCACCAG
TCCAAAAGTCGTGCAAAATATCAGGCTCGCTTTCGTTCACTGTATCAATG
TCTGGTTGAAGCTCAAGAATATCATTTTGAGctttgattttgtattttgt
tgctCTCATTACAACTTCGAAATATATTTCTTGTTCTTCATCAGATGACA
GCGTTGATAAGTCTAATTCATTTGTTAATAAAGAGCCAGCTAATTTCTTG
TCTGTTTCATTCAATGAATGTTCTTCAGTACAATTAGATTCAGTTTCACT
GATAACATCGATTATTTCTTCACTTGGTCCACCCTGATCATGACTGCTAC
TATCATCGTTGGAAGTAACATTAATATCTGTGCTAGTGGTTTTATTATTG
TGATCAACAACAGCTCCATAAGGATTTTCCATTAAAAATGCtccttttgt
ttttgttatttgaaCCTCGTCCATTGCTAGATTTTCTTGGCTGCTAC
Run BLAST on NCBI

protein sequence of TCONS_00008658-protein

>TCONS_00008658-protein ID=TCONS_00008658-protein|Name=TCONS_00008658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
SSQENLAMDEVQITKTKGAFLMENPYGAVVDHNNKTTSTDINVTSNDDSS
SHDQGGPSEEIIDVISETESNCTEEHSLNETDKKLAGSLLTNELDLSTLS
SDEEQEIYFEVVMRATKYKIKAQNDILELQPDIDTVNESEPDILHDFWTG
DENRLHPGHFSSTSDDENMDSIFDDYF
Run BLAST on NCBI

transcript from alignment at sc0000086:391693..392489

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008658 ID=TCONS_00008658|Name=TCONS_00008658|organism=Clytia hemisphaerica|type=transcript|length=797bp|location=Sequence derived from alignment at sc0000086:391693..392489 (Clytia hemisphaerica)
GTAGCAGCCAAGAAAATCTAGCAATGGACGAGGttcaaataacaaaaaca
aaaggaGCATTTTTAATGGAAAATCCTTATGGAGCTGTTGTTGATCACAA
TAATAAAACCACTAGCACAGATATTAATGTTACTTCCAACGATGATAGTA
GCAGTCATGATCAGGGTGGACCAAGTGAAGAAATAATCGATGTTATCAGT
GAAACTGAATCTAATTGTACTGAAGAACATTCATTGAATGAAACAGACAA
GAAATTAGCTGGCTCTTTATTAACAAATGAATTAGACTTATCAACGCTGT
CATCTGATGAAGAACAAGAAATATATTTCGAAGTTGTAATGAGagcaaca
aaatacaaaatcaaagCTCAAAATGATATTCTTGAGCTTCAACCAGACAT
TGATACAGTGAACGAAAGCGAGCCTGATATTTTGCACGACTTTTGGACTG
GTGATGAAAATAGATTACATCCTGGTCACTTTTCTTCCACTAGTGATGAT
GAAAACATGGATAGTATATTTGACgattatttttagatttttctaaattc
GTTTTCTGGTAAAGTAATTGTTTGATAATTGACTGGGGAAAGCATAACTA
ATTAATACAAGCAAGTTTGCTCTTTAAAATAGTCTTTTAATTTCAAGCtt
gatattttgtttgtttgtttatcataTGTTTCCATTTTGTTAAAATTAGC
TCAATATTTTGATAGAAGGGATGAACTTAAAAGGGATAATCAACTATTCT
TAGATAATGTTAGAATGGCTCATTTTTAGCAGAAAATTCGCTAACCC

Coding sequence (CDS) from alignment at sc0000086:391693..392489

>TCONS_00008658 ID=TCONS_00008658|Name=TCONS_00008658|organism=Clytia hemisphaerica|type=CDS|length=534bp|location=Sequence derived from alignment at sc0000086:391693..392489 (Clytia hemisphaerica)
AGCAGCCAAGAAAATCTAGCAATGGACGAGGttcaaataacaaaaacaaa
aggaGCATTTTTAATGGAAAATCCTTATGGAGCTGTTGTTGATCACAATA
ATAAAACCACTAGCACAGATATTAATGTTACTTCCAACGATGATAGTAGC
AGTCATGATCAGGGTGGACCAAGTGAAGAAATAATCGATGTTATCAGTGA
AACTGAATCTAATTGTACTGAAGAACATTCATTGAATGAAACAGACAAGA
AATTAGCTGGCTCTTTATTAACAAATGAATTAGACTTATCAACGCTGTCA
TCTGATGAAGAACAAGAAATATATTTCGAAGTTGTAATGAGagcaacaaa
atacaaaatcaaagCTCAAAATGATATTCTTGAGCTTCAACCAGACATTG
ATACAGTGAACGAAAGCGAGCCTGATATTTTGCACGACTTTTGGACTGGT
GATGAAAATAGATTACATCCTGGTCACTTTTCTTCCACTAGTGATGATGA
AAACATGGATAGTATATTTGACgattatttttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004858XLOC_004858Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008658-proteinTCONS_00008658-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008658-exon-sc0000086-1491911889:391693..392489TCONS_00008658-exon-sc0000086-1491911889:391693..392489Clytia hemisphaericaexon
TCONS_00008658-exon-sc0000086-1510915933:391693..392489TCONS_00008658-exon-sc0000086-1510915933:391693..392489Clytia hemisphaericaexon
TCONS_00008658-exon-sc0000086-1575043694:391693..392489TCONS_00008658-exon-sc0000086-1575043694:391693..392489Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:391693..392489 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.19401	6.68082	4.22426	4.42171	0.515645	2.10427	2.99638	2.23837	4.44681	2.91443	2.69449	1.55915	2.65227	2.38754	2.86059	3.53626	3.8779	4.43382	0.837057	1.28329	3.51568	3.59834	18.6298	17.0794	0.826544	0.632199	1.14858	3.76418	7.92025	8.83911
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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