TCONS_00008652 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008652
Unique NameTCONS_00008652
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008652 ID=TCONS_00008652|Name=TCONS_00008652|organism=Clytia hemisphaerica|type=transcript|length=831bp
ctagaAAAGATTGACATACTCGGAGTAAATATACAACATTtctaaaagat
taaaaaataacAAGAGAGTAATGGAAAAAGATACAACAATTCAAACTCAA
GAAGCGGATGTACAACGTTACAGAGAAGCGTTTCGTCTCTTCGACATTCA
CGATACTGGTGACATTAGACTGGATGAGCTTAAAGAAGTTCTTAAAAATC
TCGGTGTAGAGGCTAGCGATGACGATATTAGCCGCCGATTGGCTGAGGTT
GATATTCGTAACAATGGTGTGATCAATTTCGATGAATTTGTTAGATTCGT
ATCTAAGGGAAACACAGAAATGACACCTGCTGACGAGATGAGgcaaatgt
ttcgaattttcgatCCCGATCAAAAAGGTTATGTCACCAAGGACGAATTA
AAAGTAGTTTTGAACAAGCTTGGATTACCATTTACTGAACAACAAATTAA
AGGGATGTTGGATTATGCAGACATTGCTGGTGACGGTCGAATCAATTATT
ATGAATTCATACAAATGATGCGTTAAATGATATTTTATCCAGGGAAGCTT
TTGTTATCGGTTTTATGTTCGCTGAGTGACATATGTGAGAAGCTCTGGAA
TAGGAACAAATCAGCTTTTCTAAAGCTCTCCAACGGACAGGGCTTAAAGT
TTCGGTTAACACTCACACGCATCCTTTAGCCCTTACAGTGCCCAGGCTTT
GAATagctcccggggggggggcactgggtttgcggactgacggtatgtgc
ggaccaacaattggcttttaaaattgcacccttacagtgcagcaaaaatc
agcgaaaatcatacccttagggtgcattttc
Run BLAST on NCBI

protein sequence of TCONS_00008652-protein

>TCONS_00008652-protein ID=TCONS_00008652-protein|Name=TCONS_00008652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MEKDTTIQTQEADVQRYREAFRLFDIHDTGDIRLDELKEVLKNLGVEASD
DDISRRLAEVDIRNNGVINFDEFVRFVSKGNTEMTPADEMRQMFRIFDPD
QKGYVTKDELKVVLNKLGLPFTEQQIKGMLDYADIAGDGRINYYEFIQMM
R
Run BLAST on NCBI

transcript from alignment at sc0000086:250313..251143

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008652 ID=TCONS_00008652|Name=TCONS_00008652|organism=Clytia hemisphaerica|type=transcript|length=831bp|location=Sequence derived from alignment at sc0000086:250313..251143 (Clytia hemisphaerica)
gaaaatgcaccctaagggtatgattttcgctgatttttgctgcactgtaa
gggtgcaattttaaaagccaattgttggtccgcacataccgtcagtccgc
aaacccagtgccccccccccgggagctATTCAAAGCCTGGGCACTGTAAG
GGCTAAAGGATGCGTGTGAGTGTTAACCGAAACTTTAAGCCCTGTCCGTT
GGAGAGCTTTAGAAAAGCTGATTTGTTCCTATTCCAGAGCTTCTCACATA
TGTCACTCAGCGAACATAAAACCGATAACAAAAGCTTCCCTGGATAAAAT
ATCATTTAACGCATCATTTGTATGAATTCATAATAATTGATTCGACCGTC
ACCAGCAATGTCTGCATAATCCAACATCCCTTTAATTTGTTGTTCAGTAA
ATGGTAATCCAAGCTTGTTCAAAACTACTTTTAATTCGTCCTTGGTGACA
TAACCTTTTTGATCGGGatcgaaaattcgaaacatttgcCTCATCTCGTC
AGCAGGTGTCATTTCTGTGTTTCCCTTAGATACGAATCTAACAAATTCAT
CGAAATTGATCACACCATTGTTACGAATATCAACCTCAGCCAATCGGCGG
CTAATATCGTCATCGCTAGCCTCTACACCGAGATTTTTAAGAACTTCTTT
AAGCTCATCCAGTCTAATGTCACCAGTATCGTGAATGTCGAAGAGACGAA
ACGCTTCTCTGTAACGTTGTACATCCGCTTCTTGAGTTTGAATTGTTGTA
TCTTTTTCCATTACTCTCTTgttattttttaatcttttagaAATGTTGTA
TATTTACTCCGAGTATGTCAATCTTTtctag

Coding sequence (CDS) from alignment at sc0000086:250313..251143

>TCONS_00008652 ID=TCONS_00008652|Name=TCONS_00008652|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at sc0000086:250313..251143 (Clytia hemisphaerica)
TTAACGCATCATTTGTATGAATTCATAATAATTGATTCGACCGTCACCAG
CAATGTCTGCATAATCCAACATCCCTTTAATTTGTTGTTCAGTAAATGGT
AATCCAAGCTTGTTCAAAACTACTTTTAATTCGTCCTTGGTGACATAACC
TTTTTGATCGGGatcgaaaattcgaaacatttgcCTCATCTCGTCAGCAG
GTGTCATTTCTGTGTTTCCCTTAGATACGAATCTAACAAATTCATCGAAA
TTGATCACACCATTGTTACGAATATCAACCTCAGCCAATCGGCGGCTAAT
ATCGTCATCGCTAGCCTCTACACCGAGATTTTTAAGAACTTCTTTAAGCT
CATCCAGTCTAATGTCACCAGTATCGTGAATGTCGAAGAGACGAAACGCT
TCTCTGTAACGTTGTACATCCGCTTCTTGAGTTTGAATTGTTGTATCTTT
TTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004852XLOC_004852Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008652-proteinTCONS_00008652-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008652-exon-sc0000086-1491911889:250313..251143TCONS_00008652-exon-sc0000086-1491911889:250313..251143Clytia hemisphaericaexon
TCONS_00008652-exon-sc0000086-1510915933:250313..251143TCONS_00008652-exon-sc0000086-1510915933:250313..251143Clytia hemisphaericaexon
TCONS_00008652-exon-sc0000086-1575043694:250313..251143TCONS_00008652-exon-sc0000086-1575043694:250313..251143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:250313..251143 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.74113	1.89331	1.84401	1.02742	0.390271	0	0.590303	0.554772	0.242572	0.119954	0.232577	0.687754	8.15067	6.78742	0.228209	0.561333	7.48912	6.68837	14.7951	22.1164	7.44359	8.34442	6.9683	7.5956	6.03494	7.3441	2.23031	0.515435	0.381637	0.195764
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00008652 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.103e-28
Identity = 53/143 (37.06%), Postives = 86/143 (60.14%), Query Frame = 2 
Query:   92 QTQEADVQRYREAFRLFDIHDTGDIRLDELKEVLKNLGVEASDDDISRRLAEVDIRNNGVINFDEFVRFVSKGNTEMTPADEMRQMFRIFDPDQKGYVTKDELKVVLNKLGLPFTEQQIKGMLDYADIAGDGRINYYEFIQMM 520
            Q  E  +  ++EAF LFD    G I   EL  V+++LG   ++ ++   + EVD   NG I+F EF+  +++   +    +E+R+ FR+FD D  GY++  EL+ V+  LG   T++++  M+  ADI GDG++NY EF+QMM
Sbjct:    4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
The following BLAST results are available for this feature:
BLAST of TCONS_00008652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM35.103e-2837.06Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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