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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008649 ID=TCONS_00008649|Name=TCONS_00008649|organism=Clytia hemisphaerica|type=transcript|length=2394bp
TTTAGTCATGTGGACGACGATTTACAATATGCATTTATGAAAATagatta
tttttggattttttataaACTGTGACGTCACATAAGTTTTCGAATTactt
ttaatgggataaattttcgcggtgattaatttcgcggatttcgtgAATTT
ATTTGTCATCTGCGAAATTTAAAGTCTGgctcaaaagtatgtggacgCTT
tggtttttgagcattttctcaGCACCCATTTATGCTATGTTAGAAAGTTA
TTGAAAATTATAGCACCATGAAGTTGGACACTTTTgctgtttttggtcat
ttttggccGCCTTAGGCCTACTTCAAAGGGCTATGACTTTTTACCCAGGA
ATGCCACGAAAAATCCGAACACAGATTTGAAATGAAATCGGCAAGGTTTA
AAGTTTCTAAATATTCTGATGTCATAATTTCAAAcagtagaaaaaatatt
tttttatcttcattttccttcataatttttaatttttcaaaaatctctta
TCAATTAGATTATTCtacttggaaatatctttccaacgtgTATAACTTTC
TAACATAGCATAAATGGGTGTCgagaaaaaggtcaaaaaacgaaagtgtc
cacatacttctgagacagactttaagtcTTAATGGAAATTTGTTATATcc
gtgaaatatttttgaacagctccaaaaaagatttttatgcGTTTTTCAAT
AACTGAGTTGTTCaatttgacagtaaaaggcacaaaatcgtgaaaatctt
GTCTTCTTCCCCGCGGAACTTAATcttcgcgaaaatttatcccattaaat
taGATCGTTTGGGACCCCAAATAATCATAAAACTTCAATCAAATGGTTCA
TCCAGCTTGTCAAAATCAATGGAGAAAGAGAAAGAACTACTGCATTTTTT
TTTGAGCACTTAAAATTCGCTTAGTCGAATACCAAGAAAACCGCTAATGN
AGAACTACTGCATTTTTTTTTGAGCACTTAAAATTCGCTTAGTTGAATAC
CAAGAAAACCGCTAATGGCAGAGATAATGTATTATAATTAGGAATCAAAG
CCAGCTACTGGCGTGGGATGCTTGCTAATTATCGAATTAATGATGTTTGA
GAAACAATGTTTTAATTGTGATTTTAACGACTTATAAATGTCACTATATT
AATGATGATTGGTGTTATAATTCACGTTTATGAAGGCTAATGTATGTTGC
ATTGCAAAACTTTTGCGATTTTGTTCAAAATAGTACACAGTAACGTTCTC
AGGGGTGTCGGAAAACTTATGTAGAAGAGTAGACTTTTATGATAAAacaa
ttatctattcataacattaaaaaaagaattacttCGTAACAAAATTGTGA
TCTCCTACACAAATTATCCGACACCCCTGAGAACGCTATTGAGAGTCTTT
TtaaactcgaacctctataaatcGAACAACCTTCATTGTTCCTTCAGTTA
ATTAtgctttataaaccttactccatcactcgaaaatttccttaactcga
acagatTTATATTCCCCTTGCGTGTTCGATTTATGGAGACTCCGCAGGGC
TCCGTAGTCTTAGTTGTAATTCACGCTTATGAAGTCTAATGTATGTATGT
TACATTGCAAATCTTTCATACGTTTTTATTCGAAATGCCAATTTTGTTCT
TGTCTCTTAATTCTGCACTTTGCTCcaattgattaaaaaagttagCTCTT
AAAATGAATTGATTGGCAAATAAAGATTCCTTTCTAAAAGCTCTCTAAAT
GGCCTTTTTAAGGTATAGTTAACTATTATCATCGAAATAAATTGATACTC
CAATCATGCTCTAACGAAAATTGGTATCCGATCAGAGAGGATAAGCCCTA
GTGAAGCTTAATGAGTAGAACTCTCTCTTTGAACGGTTTGTCTTAATGTG
TAATAATCATTATAAGACTCATGGTTCAAGGAAATGGAAAACTAATTTTT
GATTGCTGTACACCTTGCCTGTGTATTCATTGAGATTGCTGCTAACTTTT
TGAAGGACTTGTACTTAGATCCCTTTTATTTCCTATTTTATGATCTCCCT
AGAAATCTTTTGCACAAATTTCACTAATTTTTTGAGatatatttcaaata
aaaaaacttaattctaatttatttttaatgatttttaaataatcttttac
agtgtaaataaaattcaaaactcaGAGCATAATAATTTagtaaaatcaaa
caacttattttttctaaattcctTTATTAATTTTACTGCGAATAccgtta
attttttttacatcgACATACACCCCCTCCCCCGTCAAAGACCCTGTAGA
TTTCCTCcaaaagaaaagatttccagggcgAAAAAAAAGTACCCTGAAAC
TATTTGTATTTGAACGAAATAGTTGTATGTGTAGAAAATAAATA Run BLAST on NCBI transcript from alignment at sc0000086:166574..168967 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008649 ID=TCONS_00008649|Name=TCONS_00008649|organism=Clytia hemisphaerica|type=transcript|length=2394bp|location=Sequence derived from alignment at sc0000086:166574..168967 (Clytia hemisphaerica)
TATTTATTTTCTACACATACAACTATTTCGTTCAAATACAAATAGTTTCA
GGGTACTTTTTTTTcgccctggaaatcttttcttttgGAGGAAATCTACA
GGGTCTTTGACGGGGGAGGGGGTGTATGTcgatgtaaaaaaaattaacgg
TATTCGCAGTAAAATTAATAAaggaatttagaaaaaataagttgtttgat
tttactAAATTATTATGCTCtgagttttgaattttatttacactgtaaaa
gattatttaaaaatcattaaaaataaattagaattaagtttttttatttg
aaatatatCTCAAAAAATTAGTGAAATTTGTGCAAAAGATTTCTAGGGAG
ATCATAAAATAGGAAATAAAAGGGATCTAAGTACAAGTCCTTCAAAAAGT
TAGCAGCAATCTCAATGAATACACAGGCAAGGTGTACAGCAATCAAAAAT
TAGTTTTCCATTTCCTTGAACCATGAGTCTTATAATGATTATTACACATT
AAGACAAACCGTTCAAAGAGAGAGTTCTACTCATTAAGCTTCACTAGGGC
TTATCCTCTCTGATCGGATACCAATTTTCGTTAGAGCATGATTGGAGTAT
CAATTTATTTCGATGATAATAGTTAACTATACCTTAAAAAGGCCATTTAG
AGAGCTTTTAGAAAGGAATCTTTATTTGCCAATCAATTCATTTTAAGAGc
taacttttttaatcaattgGAGCAAAGTGCAGAATTAAGAGACAAGAACA
AAATTGGCATTTCGAATAAAAACGTATGAAAGATTTGCAATGTAACATAC
ATACATTAGACTTCATAAGCGTGAATTACAACTAAGACTACGGAGCCCTG
CGGAGTCTCCATAAATCGAACACGCAAGGGGAATATAAatctgttcgagt
taaggaaattttcgagtgatggagtaaggtttataaagcaTAATTAACTG
AAGGAACAATGAAGGTTGTTCgatttatagaggttcgagtttaAAAAGAC
TCTCAATAGCGTTCTCAGGGGTGTCGGATAATTTGTGTAGGAGATCACAA
TTTTGTTACGaagtaattctttttttaatgttatgaatagataattgtTT
TATCATAAAAGTCTACTCTTCTACATAAGTTTTCCGACACCCCTGAGAAC
GTTACTGTGTACTATTTTGAACAAAATCGCAAAAGTTTTGCAATGCAACA
TACATTAGCCTTCATAAACGTGAATTATAACACCAATCATCATTAATATA
GTGACATTTATAAGTCGTTAAAATCACAATTAAAACATTGTTTCTCAAAC
ATCATTAATTCGATAATTAGCAAGCATCCCACGCCAGTAGCTGGCTTTGA
TTCCTAATTATAATACATTATCTCTGCCATTAGCGGTTTTCTTGGTATTC
AACTAAGCGAATTTTAAGTGCTCAAAAAAAAATGCAGTAGTTCTNCATTA
GCGGTTTTCTTGGTATTCGACTAAGCGAATTTTAAGTGCTCAAAAAAAAA
TGCAGTAGTTCTTTCTCTTTCTCCATTGATTTTGACAAGCTGGATGAACC
ATTTGATTGAAGTTTTATGATTATTTGGGGTCCCAAACGATCtaatttaa
tgggataaattttcgcgaagATTAAGTTCCGCGGGGAAGAAGACaagatt
ttcacgattttgtgccttttactgtcaaattGAACAACTCAGTTATTGAA
AAACgcataaaaatcttttttggagctgttcaaaaatatttcacggATAT
AACAAATTTCCATTAAgacttaaagtctgtctcagaagtatgtggacact
ttcgttttttgacctttttctcGACACCCATTTATGCTATGTTAGAAAGT
TATAcacgttggaaagatatttccaagtaGAATAATCTAATTGAtaagag
atttttgaaaaattaaaaattatgaaggaaaatgaagataaaaaaatatt
ttttctactgTTTGAAATTATGACATCAGAATATTTAGAAACTTTAAACC
TTGCCGATTTCATTTCAAATCTGTGTTCGGATTTTTCGTGGCATTCCTGG
GTAAAAAGTCATAGCCCTTTGAAGTAGGCCTAAGGCggccaaaaatgacc
aaaaacagcAAAAGTGTCCAACTTCATGGTGCTATAATTTTCAATAACTT
TCTAACATAGCATAAATGGGTGCtgagaaaatgctcaaaaaccaAAGcgt
ccacatacttttgagcCAGACTTTAAATTTCGCAGATGACAAATAAATTc
acgaaatccgcgaaattaatcaccgcgaaaatttatcccattaaaagtAA
TTCGAAAACTTATGTGACGTCACAGTttataaaaaatccaaaaataatct
ATTTTCATAAATGCATATTGTAAATCGTCGTCCACATGACTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008649-exon-sc0000086-1491911889:166574..168967 | TCONS_00008649-exon-sc0000086-1491911889:166574..168967 | Clytia hemisphaerica | exon |
| TCONS_00008649-exon-sc0000086-1510915933:166574..168967 | TCONS_00008649-exon-sc0000086-1510915933:166574..168967 | Clytia hemisphaerica | exon |
| TCONS_00008649-exon-sc0000086-1575043694:166574..168967 | TCONS_00008649-exon-sc0000086-1575043694:166574..168967 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:166574..168967 . |
Blast
The following BLAST results are available for this feature:
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